Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007214.1

Orthogroup ID

OG0000893

Physical Location & Seq

Genomic Coordinates Forward (+)

41148 .. 47626

Gene Structure 6479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007214.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

atgcgcattttcatcttcagtttgaaggtgtttgggtttggtgggattattggggtttttgttcttctgccaataaattttctggggacccagctggaggtggatttttcggatttgcccaacaagtctttagactcgtttagtatttcgaatgtggatgatggctcaaactgcatatattttcagtgcagtcgtctgctatcttctttacaatctgcagtgaaaccgttgaaaaattctttacagaatattactcttatacttatctttcacactcgttggttcgtcgaactagcaaactccaacgtctcactaggccatgagttcaaaaacgagggttttggtcctggcacagttattttatgtgatcaggttcttactgagggtaaacaaaaagatgtacttaaagctgccgaccttcggcgttgtggtttctgtttcaacggcagcacggggtgtgggccgctggtagatgatgtatggttatgtagcggagtgactcgtggcggtgtggagcgcggcggcgcaagtcgtggtggagctattctggagctccttcaaatcccagaaaccaccgccgcccaccttgaagatcttaactccaggagtccagaaccggcggccccgtccccagaaccggccggaaaatatccgaaccggccaccggaaatatctttaccctccctgcccggttcgaagccttcctcccggccaactgctaccaaacttcaccggaacatgcaacccgaccccagatcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

253

Amino Acids

27.34

Weight (kDa)

6.89

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01100 AT3G01100 AT3G01100 AT3G01100
fragaria_vesca	FvH4_6g47900 FvH4_6g47900 FvH4_6g47900 FvH4_6g47900 FvH4_6g47900
malus_domestica	MD09G1055900.v1.1 MD17G1053500.v1.1
prunus_persica	Prupe.2G018200_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1
pyrus_communis	pycom111g04680
rosa_chinensis	RchiOBHm_Chr2g0167091 RchiOBHm_Chr2g0167101 RchiOBHm_Chr4g0405001
rosa_laevigata	RLG00000021696 RLG00000021697
rosa_multiflora	Rmu_co8240269.1_g000001 Rmu_sc0000528.1_g000018 Rmu_sc0007214.1_g000012 Rmu_sc0010966.1_g000019 Rmu_sc0033273.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083720 Rroxscaffold_2G00083730 Rroxscaffold_4G00321490
rosa_rugosa	Rorug02G0528400.1 Rorug05G0232300 Rorug06G0073200
rosa_samantha	Rh2AG595400 Rh2AG595500 Rh2BG606400 Rh2BG606500 Rh2CG577400 Rh2CG577500 Rh2DG618100 Rh2DG618200 Rh4BG121800
rosa_wichuraiana	Rw2G049560 Rw2G049570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
AccII	CGCG	1 cut(s)	519
AciI	CCGC	8 cut(s)	464, 492, 507, 519, 522, 576, 579, 620
AcoI	YGGCCR	3 cut(s)	639, 659, 710
AcsI	RAATTY	2 cut(s)	76, 235
AdeI	CACNNNGTG	1 cut(s)	456
AfaI	GTAC	1 cut(s)	402
AfiI	CCNNNNNNNGG	4 cut(s)	97, 420, 637, 664
AgsI	TTSAA	6 cut(s)	25, 232, 328, 442, 560, 590
AjnI	CCWGG	2 cut(s)	346, 602
AluBI	AGCT	4 cut(s)	94, 410, 542, 553
AluI	AGCT	4 cut(s)	94, 410, 542, 553
Alw21I	GWGCWC	1 cut(s)	555
Alw26I	GTCTC	1 cut(s)	313
AoxI	GGCC	6 cut(s)	316, 461, 621, 639, 659, 710
ApeKI	GCWGC	2 cut(s)	410, 447
ApoI	RAATTY	2 cut(s)	76, 235
AspLEI	GCGC	3 cut(s)	6, 519, 527
AspS9I	GGNCC	4 cut(s)	87, 344, 461, 622
AsuC2I	CCSGG	2 cut(s)	690, 709
AsuHPI	GGTGA	1 cut(s)	722
AsuII	TTCGAA	2 cut(s)	149, 695
AvaII	GGWCC	2 cut(s)	87, 344
BanII	GRGCYC	1 cut(s)	555
BauI	CACGAG	1 cut(s)	501
Bbv12I	GWGCWC	1 cut(s)	555
BbvI	GCAGC	2 cut(s)	397, 459
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	1 cut(s)	460
BciT130I	CCWGG	2 cut(s)	348, 604
BclI	TGATCA	1 cut(s)	367
BcnI	CCSGG	2 cut(s)	690, 709
BcoDI	GTCTC	1 cut(s)	313
BfaI	CTAG	2 cut(s)	293, 314
BfmI	CTRYAG	1 cut(s)	216
BglII	AGATCT	1 cut(s)	592
BisI	GCNGC	7 cut(s)	411, 448, 464, 520, 523, 579, 621
BlsI	GCNGC	7 cut(s)	412, 449, 465, 521, 524, 580, 622
Bme1390I	CCNGG	4 cut(s)	348, 604, 690, 709
Bme18I	GGWCC	2 cut(s)	87, 344
BmgT120I	GGNCC	4 cut(s)	87, 344, 461, 622
BmiI	GGNNCC	3 cut(s)	88, 89, 624
BmrFI	CCNGG	4 cut(s)	348, 604, 690, 709
BpmI	CTGGAG	3 cut(s)	116, 569, 586
Bpu14I	TTCGAA	2 cut(s)	149, 695
BpuMI	CCSGG	2 cut(s)	690, 709
BsaWI	WCCGGW	2 cut(s)	664, 732
Bsc4I	CCNNNNNNNGG	4 cut(s)	97, 420, 637, 664
Bse118I	RCCGGY	3 cut(s)	616, 637, 657
BseBI	CCWGG	2 cut(s)	348, 604
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	4 cut(s)	97, 420, 637, 664
BseMII	CTCAG	1 cut(s)	372
BseX3I	CGGCCG	1 cut(s)	639
BseXI	GCAGC	2 cut(s)	397, 459
BseYI	CCCAGC	1 cut(s)	90
BsgI	GTGCAG	1 cut(s)	208
Bsh1236I	CGCG	1 cut(s)	519
Bsh1285I	CGRYCG	1 cut(s)	642
BshFI	GGCC	6 cut(s)	318, 463, 623, 641, 661, 712
BsiEI	CGRYCG	1 cut(s)	642
BsiHKAI	GWGCWC	1 cut(s)	555
BsiSI	CCGG	8 cut(s)	617, 638, 642, 658, 665, 690, 709, 733
BslFI	GGGAC	2 cut(s)	100, 613
BslI	CCNNNNNNNGG	4 cut(s)	97, 420, 637, 664
BsmAI	GTCTC	1 cut(s)	313
BsmBI	CGTCTC	1 cut(s)	313
BsmFI	GGGAC	2 cut(s)	100, 613
BsnI	GGCC	6 cut(s)	318, 463, 623, 641, 661, 712
Bsp119I	TTCGAA	2 cut(s)	149, 695
Bsp1286I	GDGCHC	1 cut(s)	555
Bsp143I	GATC	3 cut(s)	367, 592, 755
BspACI	CCGC	8 cut(s)	464, 492, 507, 519, 522, 576, 579, 620
BspANI	GGCC	6 cut(s)	318, 463, 623, 641, 661, 712
BspCNI	CTCAG	1 cut(s)	373
BspFNI	CGCG	1 cut(s)	519
BspLI	GGNNCC	3 cut(s)	88, 89, 624
BspMAI	CTGCAG	1 cut(s)	220
BspT104I	TTCGAA	2 cut(s)	149, 695
BsrFI	RCCGGY	3 cut(s)	616, 637, 657
BssAI	RCCGGY	3 cut(s)	616, 637, 657
BssMI	GATC	3 cut(s)	367, 592, 755
BssSI	CACGAG	1 cut(s)	501
Bst2BI	CACGAG	1 cut(s)	501
Bst2UI	CCWGG	2 cut(s)	348, 604
Bst4CI	ACNGT	2 cut(s)	228, 355
BstBI	TTCGAA	2 cut(s)	149, 695
BstDEI	CTNAG	1 cut(s)	381
BstF5I	GGATG	1 cut(s)	163
BstFNI	CGCG	1 cut(s)	519
BstHHI	GCGC	3 cut(s)	6, 519, 527
BstKTI	GATC	3 cut(s)	370, 595, 758
BstMAI	GTCTC	1 cut(s)	313
BstMBI	GATC	3 cut(s)	367, 592, 755
BstMCI	CGRYCG	1 cut(s)	642
BstMWI	GCNNNNNNNGC	1 cut(s)	171
BstNI	CCWGG	2 cut(s)	348, 604
BstNSI	RCATGY	1 cut(s)	742
BstSCI	CCNGG	4 cut(s)	346, 602, 688, 707
BstSFI	CTRYAG	1 cut(s)	216
BstUI	CGCG	1 cut(s)	519
BstV1I	GCAGC	2 cut(s)	397, 459
BstX2I	RGATCY	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	592
BstZI	CGGCCG	1 cut(s)	639
BsuRI	GGCC	6 cut(s)	318, 463, 623, 641, 661, 712
BtsCI	GGATG	1 cut(s)	163
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	2 cut(s)	191, 225
CfoI	GCGC	3 cut(s)	6, 519, 527
Cfr10I	RCCGGY	3 cut(s)	616, 637, 657
Cfr13I	GGNCC	4 cut(s)	87, 344, 461, 622
Csp6I	GTAC	1 cut(s)	401
CviAII	CATG	2 cut(s)	320, 739
CviQI	GTAC	1 cut(s)	401
DdeI	CTNAG	1 cut(s)	381
DpnI	GATC	3 cut(s)	369, 594, 757
DpnII	GATC	3 cut(s)	367, 592, 755
DraIII	CACNNNGTG	1 cut(s)	456
EaeI	YGGCCR	3 cut(s)	639, 659, 710
EagI	CGGCCG	1 cut(s)	639
Ecl136II	GAGCTC	1 cut(s)	553
EclXI	CGGCCG	1 cut(s)	639
Eco24I	GRGCYC	1 cut(s)	555
Eco47I	GGWCC	2 cut(s)	87, 344
Eco52I	CGGCCG	1 cut(s)	639
Eco53kI	GAGCTC	1 cut(s)	553
EcoICRI	GAGCTC	1 cut(s)	553
EcoO109I	RGGNCCY	1 cut(s)	87
EcoRII	CCWGG	2 cut(s)	346, 602
EcoT38I	GRGCYC	1 cut(s)	555
Esp3I	CGTCTC	1 cut(s)	313
FaeI	CATG	2 cut(s)	323, 742
FaiI	YATR	9 cut(s)	176, 178, 260, 321, 364, 481, 487, 740, 760
FalI	AAGNNNNNCTT	2 cut(s)	387, 419
FaqI	GGGAC	2 cut(s)	100, 613
FatI	CATG	2 cut(s)	319, 738
FbaI	TGATCA	1 cut(s)	367
Fnu4HI	GCNGC	7 cut(s)	411, 448, 464, 520, 523, 579, 621
FokI	GGATG	1 cut(s)	170
FriOI	GRGCYC	1 cut(s)	555
Fsp4HI	GCNGC	7 cut(s)	411, 448, 464, 520, 523, 579, 621
FspAI	RTGCGCAY	1 cut(s)	5
FspBI	CTAG	2 cut(s)	293, 314
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	3 cut(s)	5, 518, 526
GluI	GCNGC	7 cut(s)	411, 448, 464, 520, 523, 579, 621
GsaI	CCCAGC	1 cut(s)	94
GsuI	CTGGAG	3 cut(s)	116, 569, 586
HaeIII	GGCC	6 cut(s)	318, 463, 623, 641, 661, 712
HapII	CCGG	8 cut(s)	617, 638, 642, 658, 665, 690, 709, 733
HhaI	GCGC	3 cut(s)	6, 519, 527
Hin1II	CATG	2 cut(s)	323, 742
Hin6I	GCGC	3 cut(s)	4, 517, 525
HinP1I	GCGC	3 cut(s)	4, 517, 525
HinfI	GANTC	3 cut(s)	134, 499, 607
HpaII	CCGG	8 cut(s)	617, 638, 642, 658, 665, 690, 709, 733
HphI	GGTGA	1 cut(s)	722
Hpy166II	GTNNAC	1 cut(s)	389
Hpy188I	TCNGA	2 cut(s)	112, 654
Hpy188III	TCNNGA	2 cut(s)	548, 611
Hpy8I	GTNNAC	1 cut(s)	389
Hpy99I	CGWCG	1 cut(s)	290
HpyAV	CCTTC	4 cut(s)	19, 428, 566, 711
HpyCH4III	ACNGT	2 cut(s)	228, 355
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	4 cut(s)	174, 189, 218, 742
HpyF10VI	GCNNNNNNNGC	1 cut(s)	171
HpyF3I	CTNAG	1 cut(s)	381
HpySE526I	ACGT	1 cut(s)	306
Hsp92II	CATG	2 cut(s)	323, 742
HspAI	GCGC	3 cut(s)	4, 517, 525
KflI	GGGWCCC	1 cut(s)	87
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	3 cut(s)	367, 592, 755
LmnI	GCTCC	4 cut(s)	514, 539, 550, 558
Lsp1109I	GCAGC	2 cut(s)	397, 459
MaeI	CTAG	2 cut(s)	293, 314
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	1 cut(s)	496
MalI	GATC	3 cut(s)	369, 594, 757
MboI	GATC	3 cut(s)	367, 592, 755
MboII	GAAGA	4 cut(s)	7, 56, 195, 602
MflI	RGATCY	1 cut(s)	592
MhlI	GDGCHC	1 cut(s)	555
MluCI	AATT	2 cut(s)	76, 235
MlyI	GAGTC	3 cut(s)	128, 493, 616
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	5 cut(s)	91, 328, 376, 691, 715
MseI	TTAA	2 cut(s)	405, 597
MspA1I	CMGCKG	2 cut(s)	94, 466
MspI	CCGG	8 cut(s)	617, 638, 642, 658, 665, 690, 709, 733
MspR9I	CCNGG	4 cut(s)	348, 604, 690, 709
MvaI	CCWGG	2 cut(s)	348, 604
MvnI	CGCG	1 cut(s)	519
MwoI	GCNNNNNNNGC	1 cut(s)	171
NciI	CCSGG	2 cut(s)	690, 709
NdeII	GATC	3 cut(s)	367, 592, 755
NlaIII	CATG	2 cut(s)	323, 742
NlaIV	GGNNCC	3 cut(s)	88, 89, 624
NmuCI	GTSAC	1 cut(s)	496
NsbI	TGCGCA	1 cut(s)	5
NspI	RCATGY	1 cut(s)	742
NspV	TTCGAA	2 cut(s)	149, 695
PfoI	TCCNGGA	1 cut(s)	602
PkrI	GCNGC	7 cut(s)	412, 449, 465, 521, 524, 580, 622
PleI	GAGTC	3 cut(s)	128, 493, 615
PpsI	GAGTC	3 cut(s)	128, 493, 615
PpuMI	RGGWCCY	1 cut(s)	87
Psp124BI	GAGCTC	1 cut(s)	555
Psp5II	RGGWCCY	1 cut(s)	87
Psp6I	CCWGG	2 cut(s)	346, 602
PspFI	CCCAGC	1 cut(s)	90
PspGI	CCWGG	2 cut(s)	346, 602
PspN4I	GGNNCC	3 cut(s)	88, 89, 624
PspPI	GGNCC	4 cut(s)	87, 344, 461, 622
PspPPI	RGGWCCY	1 cut(s)	87
PstI	CTGCAG	1 cut(s)	220
PsuI	RGATCY	1 cut(s)	592
PvuII	CAGCTG	1 cut(s)	94
RsaI	GTAC	1 cut(s)	402
RsaNI	GTAC	1 cut(s)	401
SacI	GAGCTC	1 cut(s)	555
SaqAI	TTAA	2 cut(s)	405, 597
SatI	GCNGC	7 cut(s)	411, 448, 464, 520, 523, 579, 621
Sau3AI	GATC	3 cut(s)	367, 592, 755
Sau96I	GGNCC	4 cut(s)	87, 344, 461, 622
SchI	GAGTC	3 cut(s)	128, 493, 616
ScrFI	CCNGG	4 cut(s)	348, 604, 690, 709
SduI	GDGCHC	1 cut(s)	555
SfcI	CTRYAG	1 cut(s)	216
SfuI	TTCGAA	2 cut(s)	149, 695
SinI	GGWCC	2 cut(s)	87, 344
Sse9I	AATT	2 cut(s)	76, 235
SsiI	CCGC	8 cut(s)	464, 492, 507, 519, 522, 576, 579, 620
SspI	AATATT	1 cut(s)	250
SspMI	CTAG	2 cut(s)	293, 314
SstI	GAGCTC	1 cut(s)	555
StyD4I	CCNGG	4 cut(s)	346, 602, 688, 707
TaaI	ACNGT	2 cut(s)	228, 355
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	3 cut(s)	149, 288, 695
TasI	AATT	2 cut(s)	76, 235
TatI	WGTACW	1 cut(s)	400
TauI	GCSGC	5 cut(s)	466, 522, 525, 581, 623
Tru1I	TTAA	2 cut(s)	405, 597
Tru9I	TTAA	2 cut(s)	405, 597
TscAI	CASTG	2 cut(s)	191, 225
TseFI	GTSAC	1 cut(s)	496
TseI	GCWGC	2 cut(s)	410, 447
Tsp45I	GTSAC	1 cut(s)	496
TspRI	CASTG	2 cut(s)	191, 225
VpaK11BI	GGWCC	2 cut(s)	87, 344
XapI	RAATTY	2 cut(s)	76, 235
XceI	RCATGY	1 cut(s)	742
XspI	CTAG	2 cut(s)	293, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.