Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8240269.1

Orthogroup ID

OG0000893

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 583

Gene Structure 583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8240269.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ctctctgcacttttaacgtcagtaggaattaatctgggtctatgtttgctgtactgcactctctactctattctgagcaagcagcccagtaacgccaaggtttatgcatcacgctctgttgctgcgaaagaagcgccagcagaaacaaatggcttcgatttcgaaagattgttgcccactgcgggttgggtcagacgggcgtggcagccctctgaagaacagctcttgtctgtcaccagtttcgacgccgtggtgttcattcgcattttcatcttcagtttgaaggtgtttgggtttggtgggattattggggtttttgttcttctgccaataaactttcaggggacccagctggaggaggattattcggattcttcctacatgtctttggactcgtttagtatttcaaatgtgaatgatggctcaaagtggtatgtatttggttcttatgacatggtaattgaaaattgtgggaaatacttgctgttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

163

Amino Acids

18.07

Weight (kDa)

4.73

Isoelectric Point (pI)

48.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01100 AT3G01100 AT3G01100 AT3G01100
fragaria_vesca	FvH4_6g47900 FvH4_6g47900 FvH4_6g47900 FvH4_6g47900 FvH4_6g47900
malus_domestica	MD09G1055900.v1.1 MD17G1053500.v1.1
prunus_persica	Prupe.2G018200_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263100_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1 Prupe.3G263200_v2.0.a1
pyrus_communis	pycom111g04680
rosa_chinensis	RchiOBHm_Chr2g0167091 RchiOBHm_Chr2g0167101 RchiOBHm_Chr4g0405001
rosa_laevigata	RLG00000021696 RLG00000021697
rosa_multiflora	Rmu_co8240269.1_g000001 Rmu_sc0000528.1_g000018 Rmu_sc0007214.1_g000012 Rmu_sc0010966.1_g000019 Rmu_sc0033273.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083720 Rroxscaffold_2G00083730 Rroxscaffold_4G00321490
rosa_rugosa	Rorug02G0528400.1 Rorug05G0232300 Rorug06G0073200
rosa_samantha	Rh2AG595400 Rh2AG595500 Rh2BG606400 Rh2BG606500 Rh2CG577400 Rh2CG577500 Rh2DG618100 Rh2DG618200 Rh4BG121800
rosa_wichuraiana	Rw2G049560 Rw2G049570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	182
AcuI	CTGAAG	2 cut(s)	234, 259
AcyI	GRCGYC	1 cut(s)	246
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	2 cut(s)	182, 355
AflIII	ACRYGT	1 cut(s)	381
AgsI	TTSAA	3 cut(s)	283, 408, 464
AluBI	AGCT	2 cut(s)	223, 352
AluI	AGCT	2 cut(s)	223, 352
ApeKI	GCWGC	3 cut(s)	82, 122, 205
AseI	ATTAAT	1 cut(s)	30
AspLEI	GCGC	1 cut(s)	136
AspS9I	GGNCC	1 cut(s)	345
AsuHPI	GGTGA	1 cut(s)	226
AsuII	TTCGAA	1 cut(s)	162
AvaII	GGWCC	1 cut(s)	345
BbvI	GCAGC	3 cut(s)	94, 109, 217
BccI	CCATC	1 cut(s)	413
BceAI	ACGGC	1 cut(s)	233
BfoI	RGCGCY	1 cut(s)	137
BisI	GCNGC	3 cut(s)	83, 123, 206
BlsI	GCNGC	3 cut(s)	84, 124, 207
Bme18I	GGWCC	1 cut(s)	345
BmgT120I	GGNCC	1 cut(s)	345
BmiI	GGNNCC	2 cut(s)	346, 347
BmrI	ACTGGG	1 cut(s)	81
BmsI	GCATC	1 cut(s)	116
BmuI	ACTGGG	1 cut(s)	81
BpmI	CTGGAG	1 cut(s)	374
Bpu14I	TTCGAA	1 cut(s)	162
BsaHI	GRCGYC	1 cut(s)	246
BsaJI	CCNNGG	2 cut(s)	96, 249
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 355
Bse1I	ACTGG	2 cut(s)	87, 237
BseDI	CCNNGG	2 cut(s)	96, 249
BseLI	CCNNNNNNNGG	2 cut(s)	182, 355
BseMII	CTCAG	1 cut(s)	65
BseNI	ACTGG	2 cut(s)	87, 237
BseRI	GAGGAG	1 cut(s)	371
BseXI	GCAGC	3 cut(s)	94, 109, 217
BseYI	CCCAGC	1 cut(s)	348
BsgI	GTGCAG	1 cut(s)	40
BslFI	GGGAC	1 cut(s)	358
BslI	CCNNNNNNNGG	2 cut(s)	182, 355
BsmFI	GGGAC	1 cut(s)	358
Bsp119I	TTCGAA	1 cut(s)	162
BspACI	CCGC	1 cut(s)	182
BspCNI	CTCAG	1 cut(s)	66
BspLI	GGNNCC	2 cut(s)	346, 347
BspT104I	TTCGAA	1 cut(s)	162
BsrI	ACTGG	2 cut(s)	87, 237
BssECI	CCNNGG	2 cut(s)	96, 249
BssNI	GRCGYC	1 cut(s)	246
BssT1I	CCWWGG	1 cut(s)	96
BstACI	GRCGYC	1 cut(s)	246
BstBI	TTCGAA	1 cut(s)	162
BstC8I	GCNNGC	2 cut(s)	80, 138
BstDEI	CTNAG	1 cut(s)	74
BstDSI	CCRYGG	1 cut(s)	249
BstH2I	RGCGCY	1 cut(s)	137
BstHHI	GCGC	1 cut(s)	136
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNSI	RCATGY	1 cut(s)	385
BstV1I	GCAGC	3 cut(s)	94, 109, 217
BtgI	CCRYGG	1 cut(s)	249
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	177
Cac8I	GCNNGC	2 cut(s)	80, 138
CfoI	GCGC	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	345
CseI	GACGC	1 cut(s)	254
Csp6I	GTAC	1 cut(s)	52
CviAII	CATG	2 cut(s)	382, 454
CviJI	RGCY	6 cut(s)	85, 153, 208, 223, 352, 423
CviKI_1	RGCY	6 cut(s)	85, 153, 208, 223, 352, 423
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	345
Eco57I	CTGAAG	2 cut(s)	234, 259
EcoO109I	RGGNCCY	1 cut(s)	345
EcoT14I	CCWWGG	1 cut(s)	96
EcoT22I	ATGCAT	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	2 cut(s)	385, 457
FaiI	YATR	6 cut(s)	43, 105, 383, 435, 450, 455
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	2 cut(s)	381, 453
FauI	CCCGC	1 cut(s)	175
Fnu4HI	GCNGC	3 cut(s)	83, 123, 206
Fsp4HI	GCNGC	3 cut(s)	83, 123, 206
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	3 cut(s)	83, 123, 206
GsaI	CCCAGC	1 cut(s)	352
GsuI	CTGGAG	1 cut(s)	374
HaeII	RGCGCY	1 cut(s)	137
HgaI	GACGC	1 cut(s)	254
HhaI	GCGC	1 cut(s)	136
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	2 cut(s)	385, 457
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HinfI	GANTC	2 cut(s)	371, 392
HphI	GGTGA	1 cut(s)	226
Hpy188I	TCNGA	4 cut(s)	75, 194, 214, 370
Hpy99I	CGWCG	1 cut(s)	248
HpyAV	CCTTC	1 cut(s)	277
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	3 cut(s)	8, 57, 107
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	1 cut(s)	74
HpySE526I	ACGT	1 cut(s)	17
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	2 cut(s)	385, 457
HspAI	GCGC	1 cut(s)	134
KflI	GGGWCCC	1 cut(s)	345
LpnPI	CCDG	7 cut(s)	20, 100, 150, 250, 326, 338, 362
Lsp1109I	GCAGC	3 cut(s)	94, 109, 217
LweI	GCATC	1 cut(s)	116
MaeII	ACGT	1 cut(s)	17
MaeIII	GTNAC	2 cut(s)	89, 232
MboII	GAAGA	4 cut(s)	227, 265, 314, 366
MluCI	AATT	3 cut(s)	27, 459, 466
MlyI	GAGTC	1 cut(s)	386
MnlI	CCTC	3 cut(s)	220, 349, 352
Mph1103I	ATGCAT	1 cut(s)	109
MseI	TTAA	2 cut(s)	14, 30
MspA1I	CMGCKG	1 cut(s)	352
MwoI	GCNNNNNNNGC	1 cut(s)	131
NlaIII	CATG	2 cut(s)	385, 457
NlaIV	GGNNCC	2 cut(s)	346, 347
NmuCI	GTSAC	1 cut(s)	232
NsiI	ATGCAT	1 cut(s)	109
NspI	RCATGY	1 cut(s)	385
NspV	TTCGAA	1 cut(s)	162
PciI	ACATGT	1 cut(s)	381
PfeI	GAWTC	1 cut(s)	371
PkrI	GCNGC	3 cut(s)	84, 124, 207
PleI	GAGTC	1 cut(s)	386
PpsI	GAGTC	1 cut(s)	386
PpuMI	RGGWCCY	1 cut(s)	345
PscI	ACATGT	1 cut(s)	381
PshBI	ATTAAT	1 cut(s)	30
Psp5II	RGGWCCY	1 cut(s)	345
PspFI	CCCAGC	1 cut(s)	348
PspN4I	GGNNCC	2 cut(s)	346, 347
PspPI	GGNCC	1 cut(s)	345
PspPPI	RGGWCCY	1 cut(s)	345
PvuII	CAGCTG	1 cut(s)	352
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
SaqAI	TTAA	2 cut(s)	14, 30
SatI	GCNGC	3 cut(s)	83, 123, 206
Sau96I	GGNCC	1 cut(s)	345
SchI	GAGTC	1 cut(s)	386
SetI	ASST	5 cut(s)	20, 102, 225, 288, 354
SfaNI	GCATC	1 cut(s)	116
SfuI	TTCGAA	1 cut(s)	162
SinI	GGWCC	1 cut(s)	345
Sse9I	AATT	3 cut(s)	27, 459, 466
SsiI	CCGC	1 cut(s)	182
StyI	CCWWGG	1 cut(s)	96
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	3 cut(s)	156, 162, 243
TasI	AATT	3 cut(s)	27, 459, 466
TatI	WGTACW	1 cut(s)	51
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	2 cut(s)	14, 30
Tru9I	TTAA	2 cut(s)	14, 30
TscAI	CASTG	1 cut(s)	184
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	3 cut(s)	82, 122, 205
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	2 cut(s)	247, 259
TspRI	CASTG	1 cut(s)	184
VpaK11BI	GGWCC	1 cut(s)	345
VspI	ATTAAT	1 cut(s)	30
XceI	RCATGY	1 cut(s)	385
Zsp2I	ATGCAT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.