Rh5CG346700

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0015196
Physical Location & Seq
Reverse (-)
39943483 .. 39945088
1606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG346700.1

Sequence Viewer

Length: 840 bp
ATGTGTTGGGCTTTGGGCCTACCTTCTAGAGTTATGACCCAAACCTCTTCCGGTGGCTCAGTTGACTGTATCCTTCCGGGATGTGATGCGTCCATTCTACTAGATGGAAGCTCCAGTGAGAAAACAGCTCCTCCAAATCTCAGTGTACGGGGTTATGATGTCATTGATGCCGCAAAAGCTGCAGTTGAAGTTGTATGCCCAGGAAAGGTCTCCTGCTCCGATATCATTGTAATGGCTACCAGAGAAGCTGTATGTCTGAGTGGAGGAGGGCGATACAATGTTCAAACTGGGAGAAGAGATGGCTTTGTATCTCTTGCATCAAATGTTGATCTCCCAGCTCCATCAATTTCAGTGAATCAATCTGTTGCAGCATTTGCTAGAAAAGGACTCAATGCCATTGACATGGTTTATCTTCTTGGCGGTCACACCATTGGGGTGGCACATTGTTTTCTCTTCCAAGACCGTCTATACAATTTCCAAAACACTGGCGGACCTGACCGGAGCATGGATTCATCATTGCTGCGAAAGCTGAGATCTATCTGCCCTCAAAATTCAGCAGGCAGTAAAACTGCTGATCTTGACCAGAACGAGTACGTACCAAGTTCGTTCATTGTTGACAACTCATTCTACAAGCAAATACGAGCCAGGAGAGGAGTTCTTCAAATCGACCAAGAGCTAGCTTTCCACCCCATAACTCAGTCCACAGTGACAACAATTGCCAATAGTTTTGGCTTCTCCACGAAATTTGGGCAGGCCATGGTTAAGTTGGGAGCAGTGGGAGTACTTACAGGCACGCAAGGGGAGATCAGGAAATCATGCAGAGCAGTTAACACTCCTTGA

Protein Analysis

279

Amino Acids

29.61

Weight (kDa)

8.57

Isoelectric Point (pI)

39.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 22 - 242 8.8e-67 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22410
fragaria_vesca FvH4_3g25270
malus_domestica MD03G1147900.v1.1
prunus_persica Prupe.6G132800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046861
rosa_laevigata RLG00000034451
rosa_multiflora Rmu_sc0002264.1_g000029
rosa_roxburghii Rroxscaffold_1G00034520
rosa_rugosa Rorug05G0232300
rosa_samantha Rh1BG405200 Rh1DG435700 Rh5AG311600 Rh5BG320600 Rh5CG346700 Rh5DG331300
rosa_wichuraiana Rw5G029120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 171, 420, 489
AcsI RAATTY 2 cut(s) 550, 743
AfaI GTAC 4 cut(s) 147, 593, 597, 783
AfiI CCNNNNNNNGG 2 cut(s) 205, 505
AgsI TTSAA 3 cut(s) 188, 284, 662
AjnI CCWGG 2 cut(s) 199, 644
AluBI AGCT 8 cut(s) 111, 128, 179, 248, 338, 529, 676, 680
AluI AGCT 8 cut(s) 111, 128, 179, 248, 338, 529, 676, 680
Alw26I GTCTC 1 cut(s) 214
AoxI GGCC 2 cut(s) 16, 753
ApeKI GCWGC 3 cut(s) 179, 368, 520
ApoI RAATTY 2 cut(s) 550, 743
AspS9I GGNCC 2 cut(s) 16, 491
AsuC2I CCSGG 1 cut(s) 78
AsuNHI GCTAGC 1 cut(s) 676
AvaII GGWCC 1 cut(s) 491
BbvI GCAGC 3 cut(s) 166, 380, 507
BccI CCATC 3 cut(s) 98, 293, 349
BciT130I CCWGG 2 cut(s) 201, 646
BciVI GTATCC 1 cut(s) 80
BcnI CCSGG 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 214
BfaI CTAG 4 cut(s) 27, 101, 378, 677
BfmI CTRYAG 1 cut(s) 180
BfuI GTATCC 1 cut(s) 80
BglII AGATCT 1 cut(s) 533
BisI GCNGC 4 cut(s) 171, 180, 369, 521
BlsI GCNGC 4 cut(s) 172, 181, 370, 522
BmcAI AGTACT 1 cut(s) 783
Bme1390I CCNGG 3 cut(s) 78, 201, 646
Bme18I GGWCC 1 cut(s) 491
BmgT120I GGNCC 2 cut(s) 16, 491
BmrFI CCNGG 3 cut(s) 78, 201, 646
BmrI ACTGGG 1 cut(s) 297
BmsI GCATC 3 cut(s) 76, 157, 326
BmtI GCTAGC 1 cut(s) 680
BmuI ACTGGG 1 cut(s) 297
BpmI CTGGAG 1 cut(s) 97
BpuMI CCSGG 1 cut(s) 78
BsaAI YACGTR 1 cut(s) 595
BsaI GGTCTC 1 cut(s) 214
BsaJI CCNNGG 2 cut(s) 199, 756
BsaWI WCCGGW 2 cut(s) 50, 498
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 505
Bse1I ACTGG 3 cut(s) 114, 292, 490
Bse3DI GCAATG 1 cut(s) 515
BseBI CCWGG 2 cut(s) 201, 646
BseDI CCNNGG 2 cut(s) 199, 756
BseGI GGATG 1 cut(s) 86
BseLI CCNNNNNNNGG 2 cut(s) 205, 505
BseMI GCAATG 1 cut(s) 515
BseMII CTCAG 5 cut(s) 72, 154, 248, 521, 710
BseNI ACTGG 3 cut(s) 114, 292, 490
BseRI GAGGAG 3 cut(s) 120, 279, 666
BseXI GCAGC 3 cut(s) 166, 380, 507
BseYI CCCAGC 1 cut(s) 334
BshFI GGCC 2 cut(s) 18, 755
BsiSI CCGG 3 cut(s) 51, 77, 499
BslI CCNNNNNNNGG 2 cut(s) 205, 505
BsmAI GTCTC 1 cut(s) 214
BsnI GGCC 2 cut(s) 18, 755
Bso31I GGTCTC 1 cut(s) 214
Bsp143I GATC 4 cut(s) 328, 533, 574, 804
Bsp19I CCATGG 1 cut(s) 756
BspACI CCGC 3 cut(s) 171, 420, 489
BspANI GGCC 2 cut(s) 18, 755
BspCNI CTCAG 5 cut(s) 71, 153, 249, 522, 709
BspMAI CTGCAG 1 cut(s) 184
BspOI GCTAGC 1 cut(s) 680
BspTNI GGTCTC 1 cut(s) 214
BsrDI GCAATG 1 cut(s) 515
BsrI ACTGG 3 cut(s) 114, 292, 490
BssECI CCNNGG 2 cut(s) 199, 756
BssMI GATC 4 cut(s) 328, 533, 574, 804
BssT1I CCWWGG 1 cut(s) 756
Bst2UI CCWGG 2 cut(s) 201, 646
Bst4CI ACNGT 3 cut(s) 68, 464, 706
Bst6I CTCTTC 3 cut(s) 52, 289, 458
BstAPI GCANNNNNTGC 2 cut(s) 179, 374
BstBAI YACGTR 1 cut(s) 595
BstC8I GCNNGC 4 cut(s) 559, 678, 753, 794
BstDEI CTNAG 5 cut(s) 58, 140, 257, 530, 696
BstDSI CCRYGG 1 cut(s) 756
BstF5I GGATG 1 cut(s) 86
BstKTI GATC 4 cut(s) 331, 536, 577, 807
BstMAI GTCTC 1 cut(s) 214
BstMBI GATC 4 cut(s) 328, 533, 574, 804
BstMWI GCNNNNNNNGC 4 cut(s) 176, 179, 374, 526
BstNI CCWGG 2 cut(s) 201, 646
BstSCI CCNGG 3 cut(s) 76, 199, 644
BstSFI CTRYAG 1 cut(s) 180
BstSNI TACGTA 1 cut(s) 595
BstV1I GCAGC 3 cut(s) 166, 380, 507
BstX2I RGATCY 1 cut(s) 533
BstXI CCANNNNNNTGG 3 cut(s) 403, 436, 485
BstYI RGATCY 1 cut(s) 533
BsuI GTATCC 1 cut(s) 80
BsuRI GGCC 2 cut(s) 18, 755
BtgI CCRYGG 1 cut(s) 756
BtsCI GGATG 1 cut(s) 86
BtsI GCAGTG 1 cut(s) 780
BtsIMutI CAGTG 6 cut(s) 121, 148, 357, 483, 711, 780
Cac8I GCNNGC 4 cut(s) 559, 678, 753, 794
Cfr13I GGNCC 2 cut(s) 16, 491
CseI GACGC 1 cut(s) 78
Csp6I GTAC 4 cut(s) 146, 592, 596, 782
CspCI CAANNNNNGTGG 2 cut(s) 727, 762
CviAII CATG 4 cut(s) 403, 505, 757, 816
CviQI GTAC 4 cut(s) 146, 592, 596, 782
DdeI CTNAG 5 cut(s) 58, 140, 257, 530, 696
DpnI GATC 4 cut(s) 330, 535, 576, 806
DpnII GATC 4 cut(s) 328, 533, 574, 804
Eam1104I CTCTTC 3 cut(s) 52, 289, 458
EarI CTCTTC 3 cut(s) 52, 289, 458
EciI GGCGGA 1 cut(s) 504
Eco105I TACGTA 1 cut(s) 595
Eco130I CCWWGG 1 cut(s) 756
Eco31I GGTCTC 1 cut(s) 214
Eco32I GATATC 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 491
EcoRII CCWGG 2 cut(s) 199, 644
EcoRV GATATC 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 756
ErhI CCWWGG 1 cut(s) 756
FaeI CATG 4 cut(s) 406, 508, 760, 819
FatI CATG 4 cut(s) 402, 504, 756, 815
Fnu4HI GCNGC 4 cut(s) 171, 180, 369, 521
FokI GGATG 1 cut(s) 93
Fsp4HI GCNGC 4 cut(s) 171, 180, 369, 521
FspBI CTAG 4 cut(s) 27, 101, 378, 677
GluI GCNGC 4 cut(s) 171, 180, 369, 521
GsaI CCCAGC 1 cut(s) 338
GsuI CTGGAG 1 cut(s) 97
HaeIII GGCC 2 cut(s) 18, 755
HapII CCGG 3 cut(s) 51, 77, 499
HgaI GACGC 1 cut(s) 78
Hin1II CATG 4 cut(s) 406, 508, 760, 819
HincII GTYRAC 3 cut(s) 64, 616, 829
HindII GTYRAC 3 cut(s) 64, 616, 829
HinfI GANTC 3 cut(s) 355, 387, 509
HpaI GTTAAC 1 cut(s) 829
HpaII CCGG 3 cut(s) 51, 77, 499
Hpy166II GTNNAC 5 cut(s) 64, 146, 616, 702, 829
Hpy188I TCNGA 2 cut(s) 220, 258
Hpy188III TCNNGA 3 cut(s) 27, 578, 808
Hpy8I GTNNAC 5 cut(s) 64, 146, 616, 702, 829
HpyAV CCTTC 2 cut(s) 33, 83
HpyCH4III ACNGT 3 cut(s) 68, 464, 706
HpyCH4IV ACGT 1 cut(s) 594
HpyCH4V TGCA 4 cut(s) 182, 317, 368, 819
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 179, 374, 526
HpyF3I CTNAG 5 cut(s) 58, 140, 257, 530, 696
HpySE526I ACGT 1 cut(s) 594
Hsp92II CATG 4 cut(s) 406, 508, 760, 819
KspAI GTTAAC 1 cut(s) 829
Kzo9I GATC 4 cut(s) 328, 533, 574, 804
LmnI GCTCC 6 cut(s) 116, 133, 221, 343, 501, 770
Lsp1109I GCAGC 3 cut(s) 166, 380, 507
LweI GCATC 3 cut(s) 76, 157, 326
MaeI CTAG 4 cut(s) 27, 101, 378, 677
MaeII ACGT 1 cut(s) 594
MaeIII GTNAC 2 cut(s) 422, 706
MalI GATC 4 cut(s) 330, 535, 576, 806
MboI GATC 4 cut(s) 328, 533, 574, 804
MboII GAAGA 5 cut(s) 39, 306, 404, 445, 650
MfeI CAATTG 1 cut(s) 714
MflI RGATCY 1 cut(s) 533
MluCI AATT 5 cut(s) 345, 472, 550, 714, 743
MlyI GAGTC 1 cut(s) 381
MnlI CCTC 6 cut(s) 55, 141, 257, 260, 555, 644
MseI TTAA 2 cut(s) 762, 828
MslI CAYNNNNRTG 3 cut(s) 230, 401, 434
MspI CCGG 3 cut(s) 51, 77, 499
MspR9I CCNGG 3 cut(s) 78, 201, 646
MunI CAATTG 1 cut(s) 714
MvaI CCWGG 2 cut(s) 201, 646
MwoI GCNNNNNNNGC 4 cut(s) 176, 179, 374, 526
NciI CCSGG 1 cut(s) 78
NcoI CCATGG 1 cut(s) 756
NdeII GATC 4 cut(s) 328, 533, 574, 804
NheI GCTAGC 1 cut(s) 676
NlaIII CATG 4 cut(s) 406, 508, 760, 819
NmuCI GTSAC 2 cut(s) 422, 706
PfeI GAWTC 2 cut(s) 355, 509
PfoI TCCNGGA 1 cut(s) 76
PkrI GCNGC 4 cut(s) 172, 181, 370, 522
PleI GAGTC 1 cut(s) 381
PpsI GAGTC 1 cut(s) 381
Ppu21I YACGTR 1 cut(s) 595
Psp6I CCWGG 2 cut(s) 199, 644
PspFI CCCAGC 1 cut(s) 334
PspGI CCWGG 2 cut(s) 199, 644
PspPI GGNCC 2 cut(s) 16, 491
PstI CTGCAG 1 cut(s) 184
PsuI RGATCY 1 cut(s) 533
RsaI GTAC 4 cut(s) 147, 593, 597, 783
RsaNI GTAC 4 cut(s) 146, 592, 596, 782
RseI CAYNNNNRTG 3 cut(s) 230, 401, 434
SaqAI TTAA 2 cut(s) 762, 828
SatI GCNGC 4 cut(s) 171, 180, 369, 521
Sau3AI GATC 4 cut(s) 328, 533, 574, 804
Sau96I GGNCC 2 cut(s) 16, 491
ScaI AGTACT 1 cut(s) 783
SchI GAGTC 1 cut(s) 381
ScrFI CCNGG 3 cut(s) 78, 201, 646
SfaNI GCATC 3 cut(s) 76, 157, 326
SfcI CTRYAG 1 cut(s) 180
SinI GGWCC 1 cut(s) 491
SmiMI CAYNNNNRTG 3 cut(s) 230, 401, 434
SnaBI TACGTA 1 cut(s) 595
Sse9I AATT 5 cut(s) 345, 472, 550, 714, 743
SsiI CCGC 3 cut(s) 171, 420, 489
SspMI CTAG 4 cut(s) 27, 101, 378, 677
StyD4I CCNGG 3 cut(s) 76, 199, 644
StyI CCWWGG 1 cut(s) 756
TaaI ACNGT 3 cut(s) 68, 464, 706
TaiI ACGT 1 cut(s) 597
TaqI TCGA 1 cut(s) 666
TasI AATT 5 cut(s) 345, 472, 550, 714, 743
TatI WGTACW 1 cut(s) 781
TauI GCSGC 1 cut(s) 173
TfiI GAWTC 2 cut(s) 355, 509
Tru1I TTAA 2 cut(s) 762, 828
Tru9I TTAA 2 cut(s) 762, 828
TscAI CASTG 6 cut(s) 121, 148, 357, 490, 711, 780
TseFI GTSAC 2 cut(s) 422, 706
TseI GCWGC 3 cut(s) 179, 368, 520
Tsp45I GTSAC 2 cut(s) 422, 706
TspDTI ATGAA 2 cut(s) 501, 598
TspRI CASTG 6 cut(s) 121, 148, 357, 490, 711, 780
VpaK11BI GGWCC 1 cut(s) 491
XapI RAATTY 2 cut(s) 550, 743
XbaI TCTAGA 1 cut(s) 26
XcmI CCANNNNNNNNNTGG 1 cut(s) 763
XspI CTAG 4 cut(s) 27, 101, 378, 677
ZrmI AGTACT 1 cut(s) 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.