RLG00000034451

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0015196
Physical Location & Seq
Reverse (-)
42860764 .. 42863041
2278 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034451

Sequence Viewer

Length: 981 bp
ATGTCTAGCAGAGCTCTAGTGGCGGTAGGGATATTTGGGCTCATATTTGTGAGCCTCACAGGGCAGTGCTATGGGGCACTAGAGGTAGGGTTCTACGAGAGCAAGTGCCTTGCTGATGTTGAAAAAGTAGTAGCTGATGTAGTCAAGGCAAAGTACAAAATGGACCGAACAATTGCTCCTGCTCTCGTTCGCATGCAGTTCCACGATTGCTTTGTGAATGGATGTGATGCGTCCATTCTACTAGATGGAAGCTCCAGTGAGAAAACAGCTCCTCCGAATCTCAGTGTACGGGGTTATGATGTCATTGATGCAGCAAAAGCTGCAGTCGAAGTTGTATGCCCAGGAGAGGTCTCCTGCTCCGATATCATTGTAATGGCTACCAGAGAAGCTGTATGTCTGAGTGGAGGAGGGCGATACAGTGTTCAAACTGGGAGAAGAGATGGCTTTGTATCTCTTGCATCAAATGTTGATCTCCCAGCTCCATCAATTTCAGTGAATCAATCTGTTGCAGCATTTGCTAGAAAAGGACTCAATGCCATTGACATGGTTTATCTTCTTGGCGGTCACACCATTGGGGTGGCACATTGTTTTCTCTTCCAAGACCGTCTATACAATTTCCAAAACACTGGCGGACCTGACCAGAGCATGGATTCATCATTGCTGCGAAAGCTGAGATCTATCTGCCCTCAAAATTCAGCAGGCAGTAAAACTGCTGATCTTGACCAGAACGAGTACGTACCAAGTTCGTTCATTGTTGACAACTCATTCTACAAGCAAATACGAGCCAGGAGAGGAGTTCTTCAAATCGACCAAGAGCTAGCTTTCGACCCCATAACTCAGTCCACAGTGACAACAATTGCCAATAGTTTTGGCTTCTCCGCGAAATTTGGGCAGGCCATGGTTAAGTTGGGAGCAGTGGGAGTACTTACAGGCACGCAAGGGGAGATCAGGAAATCATGCAGAGCAGTTAATACTCCTTGA

Protein Analysis

327

Amino Acids

34.82

Weight (kDa)

7.48

Isoelectric Point (pI)

35.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 44 - 289 6.3e-79 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22410
fragaria_vesca FvH4_3g25270
malus_domestica MD03G1147900.v1.1
prunus_persica Prupe.6G132800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046861
rosa_laevigata RLG00000034451
rosa_multiflora Rmu_sc0002264.1_g000029
rosa_roxburghii Rroxscaffold_1G00034520
rosa_rugosa Rorug05G0232300
rosa_samantha Rh1BG405200 Rh1DG435700 Rh5AG311600 Rh5BG320600 Rh5CG346700 Rh5DG331300
rosa_wichuraiana Rw5G029120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 646
AccII CGCG 1 cut(s) 881
AciI CCGC 4 cut(s) 23, 561, 630, 879
AcsI RAATTY 2 cut(s) 691, 884
AfaI GTAC 5 cut(s) 155, 288, 734, 738, 924
AfiI CCNNNNNNNGG 2 cut(s) 346, 646
AgsI TTSAA 3 cut(s) 122, 425, 803
AjnI CCWGG 2 cut(s) 340, 785
AloI GAACNNNNNNTCC 2 cut(s) 160, 192
Alw21I GWGCWC 1 cut(s) 16
Alw26I GTCTC 1 cut(s) 355
AoxI GGCC 1 cut(s) 894
ApeKI GCWGC 4 cut(s) 311, 320, 509, 661
ApoI RAATTY 2 cut(s) 691, 884
AspS9I GGNCC 2 cut(s) 163, 632
AsuNHI GCTAGC 1 cut(s) 817
AvaII GGWCC 2 cut(s) 163, 632
BaeGI GKGCMC 1 cut(s) 79
BanII GRGCYC 2 cut(s) 16, 42
Bbv12I GWGCWC 1 cut(s) 16
BbvI GCAGC 4 cut(s) 307, 323, 521, 648
BccI CCATC 3 cut(s) 239, 434, 490
BciT130I CCWGG 2 cut(s) 342, 787
BcoDI GTCTC 1 cut(s) 355
BfaI CTAG 6 cut(s) 6, 17, 80, 242, 519, 818
BfmI CTRYAG 1 cut(s) 321
BglII AGATCT 1 cut(s) 674
BisI GCNGC 4 cut(s) 312, 321, 510, 662
BlsI GCNGC 4 cut(s) 313, 322, 511, 663
BmcAI AGTACT 1 cut(s) 924
Bme1390I CCNGG 2 cut(s) 342, 787
Bme18I GGWCC 2 cut(s) 163, 632
BmgT120I GGNCC 2 cut(s) 163, 632
BmrFI CCNGG 2 cut(s) 342, 787
BmrI ACTGGG 1 cut(s) 438
BmsI GCATC 3 cut(s) 217, 298, 467
BmtI GCTAGC 1 cut(s) 821
BmuI ACTGGG 1 cut(s) 438
BpmI CTGGAG 1 cut(s) 238
BsaAI YACGTR 1 cut(s) 736
BsaI GGTCTC 1 cut(s) 355
BsaJI CCNNGG 2 cut(s) 340, 897
BsaXI ACNNNNNCTCC 4 cut(s) 160, 190, 256, 286
Bsc4I CCNNNNNNNGG 2 cut(s) 346, 646
Bse1I ACTGG 3 cut(s) 255, 433, 631
Bse3DI GCAATG 1 cut(s) 656
BseBI CCWGG 2 cut(s) 342, 787
BseDI CCNNGG 2 cut(s) 340, 897
BseGI GGATG 1 cut(s) 227
BseLI CCNNNNNNNGG 2 cut(s) 346, 646
BseMI GCAATG 1 cut(s) 656
BseMII CTCAG 4 cut(s) 295, 389, 662, 851
BseNI ACTGG 3 cut(s) 255, 433, 631
BseRI GAGGAG 3 cut(s) 261, 420, 807
BseSI GKGCMC 1 cut(s) 79
BseXI GCAGC 4 cut(s) 307, 323, 521, 648
BseYI CCCAGC 1 cut(s) 475
Bsh1236I CGCG 1 cut(s) 881
BshFI GGCC 1 cut(s) 896
BsiHKAI GWGCWC 1 cut(s) 16
BslI CCNNNNNNNGG 2 cut(s) 346, 646
BsmAI GTCTC 1 cut(s) 355
BsnI GGCC 1 cut(s) 896
Bso31I GGTCTC 1 cut(s) 355
Bsp1286I GDGCHC 3 cut(s) 16, 42, 79
Bsp143I GATC 4 cut(s) 469, 674, 715, 945
Bsp19I CCATGG 1 cut(s) 897
BspACI CCGC 4 cut(s) 23, 561, 630, 879
BspANI GGCC 1 cut(s) 896
BspCNI CTCAG 4 cut(s) 294, 390, 663, 850
BspFNI CGCG 1 cut(s) 881
BspMAI CTGCAG 1 cut(s) 325
BspOI GCTAGC 1 cut(s) 821
BspTNI GGTCTC 1 cut(s) 355
BsrDI GCAATG 1 cut(s) 656
BsrI ACTGG 3 cut(s) 255, 433, 631
BssECI CCNNGG 2 cut(s) 340, 897
BssMI GATC 4 cut(s) 469, 674, 715, 945
BssT1I CCWWGG 1 cut(s) 897
Bst2UI CCWGG 2 cut(s) 342, 787
Bst4CI ACNGT 3 cut(s) 419, 605, 847
Bst6I CTCTTC 2 cut(s) 430, 599
BstAPI GCANNNNNTGC 2 cut(s) 320, 515
BstBAI YACGTR 1 cut(s) 736
BstC8I GCNNGC 5 cut(s) 194, 700, 819, 894, 935
BstDEI CTNAG 4 cut(s) 281, 398, 671, 837
BstDSI CCRYGG 1 cut(s) 897
BstF5I GGATG 1 cut(s) 227
BstFNI CGCG 1 cut(s) 881
BstKTI GATC 4 cut(s) 472, 677, 718, 948
BstMAI GTCTC 1 cut(s) 355
BstMBI GATC 4 cut(s) 469, 674, 715, 945
BstMWI GCNNNNNNNGC 5 cut(s) 20, 317, 320, 515, 667
BstNI CCWGG 2 cut(s) 342, 787
BstNSI RCATGY 1 cut(s) 196
BstSCI CCNGG 2 cut(s) 340, 785
BstSFI CTRYAG 1 cut(s) 321
BstSLI GKGCMC 1 cut(s) 79
BstSNI TACGTA 1 cut(s) 736
BstUI CGCG 1 cut(s) 881
BstV1I GCAGC 4 cut(s) 307, 323, 521, 648
BstX2I RGATCY 1 cut(s) 674
BstXI CCANNNNNNTGG 3 cut(s) 544, 577, 626
BstYI RGATCY 1 cut(s) 674
BsuRI GGCC 1 cut(s) 896
BtgI CCRYGG 1 cut(s) 897
BtsCI GGATG 1 cut(s) 227
BtsI GCAGTG 2 cut(s) 71, 921
BtsIMutI CAGTG 8 cut(s) 71, 262, 289, 424, 498, 624, 852, 921
Cac8I GCNNGC 5 cut(s) 194, 700, 819, 894, 935
Cfr13I GGNCC 2 cut(s) 163, 632
CseI GACGC 1 cut(s) 219
Csp6I GTAC 5 cut(s) 154, 287, 733, 737, 923
CviAII CATG 5 cut(s) 193, 544, 646, 898, 957
CviQI GTAC 5 cut(s) 154, 287, 733, 737, 923
DdeI CTNAG 4 cut(s) 281, 398, 671, 837
DpnI GATC 4 cut(s) 471, 676, 717, 947
DpnII GATC 4 cut(s) 469, 674, 715, 945
Eam1104I CTCTTC 2 cut(s) 430, 599
EarI CTCTTC 2 cut(s) 430, 599
EciI GGCGGA 1 cut(s) 645
Ecl136II GAGCTC 1 cut(s) 14
Eco105I TACGTA 1 cut(s) 736
Eco130I CCWWGG 1 cut(s) 897
Eco24I GRGCYC 2 cut(s) 16, 42
Eco31I GGTCTC 1 cut(s) 355
Eco32I GATATC 1 cut(s) 364
Eco47I GGWCC 2 cut(s) 163, 632
Eco53kI GAGCTC 1 cut(s) 14
EcoICRI GAGCTC 1 cut(s) 14
EcoRII CCWGG 2 cut(s) 340, 785
EcoRV GATATC 1 cut(s) 364
EcoT14I CCWWGG 1 cut(s) 897
EcoT38I GRGCYC 2 cut(s) 16, 42
ErhI CCWWGG 1 cut(s) 897
FaeI CATG 5 cut(s) 196, 547, 649, 901, 960
FatI CATG 5 cut(s) 192, 543, 645, 897, 956
Fnu4HI GCNGC 4 cut(s) 312, 321, 510, 662
FokI GGATG 1 cut(s) 234
FriOI GRGCYC 2 cut(s) 16, 42
Fsp4HI GCNGC 4 cut(s) 312, 321, 510, 662
FspBI CTAG 6 cut(s) 6, 17, 80, 242, 519, 818
GluI GCNGC 4 cut(s) 312, 321, 510, 662
GsaI CCCAGC 1 cut(s) 479
GsuI CTGGAG 1 cut(s) 238
HaeIII GGCC 1 cut(s) 896
HgaI GACGC 1 cut(s) 219
Hin1II CATG 5 cut(s) 196, 547, 649, 901, 960
HincII GTYRAC 1 cut(s) 757
HindII GTYRAC 1 cut(s) 757
HinfI GANTC 4 cut(s) 277, 496, 528, 650
Hpy166II GTNNAC 3 cut(s) 287, 757, 843
Hpy188I TCNGA 3 cut(s) 276, 361, 399
Hpy188III TCNNGA 2 cut(s) 719, 949
Hpy8I GTNNAC 3 cut(s) 287, 757, 843
HpyCH4III ACNGT 3 cut(s) 419, 605, 847
HpyCH4IV ACGT 1 cut(s) 735
HpyCH4V TGCA 6 cut(s) 196, 311, 323, 458, 509, 960
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 317, 320, 515, 667
HpyF3I CTNAG 4 cut(s) 281, 398, 671, 837
HpySE526I ACGT 1 cut(s) 735
Hsp92II CATG 5 cut(s) 196, 547, 649, 901, 960
Kzo9I GATC 4 cut(s) 469, 674, 715, 945
LmnI GCTCC 6 cut(s) 181, 257, 274, 362, 484, 911
Lsp1109I GCAGC 4 cut(s) 307, 323, 521, 648
LweI GCATC 3 cut(s) 217, 298, 467
MaeI CTAG 6 cut(s) 6, 17, 80, 242, 519, 818
MaeII ACGT 1 cut(s) 735
MaeIII GTNAC 2 cut(s) 563, 847
MalI GATC 4 cut(s) 471, 676, 717, 947
MboI GATC 4 cut(s) 469, 674, 715, 945
MboII GAAGA 4 cut(s) 447, 545, 586, 791
MfeI CAATTG 2 cut(s) 171, 855
MflI RGATCY 1 cut(s) 674
MhlI GDGCHC 3 cut(s) 16, 42, 79
MluCI AATT 6 cut(s) 171, 486, 613, 691, 855, 884
MlyI GAGTC 1 cut(s) 522
MnlI CCTC 8 cut(s) 65, 76, 282, 340, 398, 401, 696, 785
MseI TTAA 2 cut(s) 903, 969
MslI CAYNNNNRTG 4 cut(s) 47, 371, 542, 575
MspR9I CCNGG 2 cut(s) 342, 787
MunI CAATTG 2 cut(s) 171, 855
MvaI CCWGG 2 cut(s) 342, 787
MvnI CGCG 1 cut(s) 881
MwoI GCNNNNNNNGC 5 cut(s) 20, 317, 320, 515, 667
NcoI CCATGG 1 cut(s) 897
NdeII GATC 4 cut(s) 469, 674, 715, 945
NheI GCTAGC 1 cut(s) 817
NlaIII CATG 5 cut(s) 196, 547, 649, 901, 960
NmuCI GTSAC 2 cut(s) 563, 847
NspI RCATGY 1 cut(s) 196
PaeI GCATGC 1 cut(s) 196
PfeI GAWTC 3 cut(s) 277, 496, 650
PflMI CCANNNNNTGG 1 cut(s) 646
PkrI GCNGC 4 cut(s) 313, 322, 511, 663
PleI GAGTC 1 cut(s) 522
PpsI GAGTC 1 cut(s) 522
Ppu21I YACGTR 1 cut(s) 736
Psp124BI GAGCTC 1 cut(s) 16
Psp6I CCWGG 2 cut(s) 340, 785
PspFI CCCAGC 1 cut(s) 475
PspGI CCWGG 2 cut(s) 340, 785
PspPI GGNCC 2 cut(s) 163, 632
PstI CTGCAG 1 cut(s) 325
PsuI RGATCY 1 cut(s) 674
RsaI GTAC 5 cut(s) 155, 288, 734, 738, 924
RsaNI GTAC 5 cut(s) 154, 287, 733, 737, 923
RseI CAYNNNNRTG 4 cut(s) 47, 371, 542, 575
SacI GAGCTC 1 cut(s) 16
SaqAI TTAA 2 cut(s) 903, 969
SatI GCNGC 4 cut(s) 312, 321, 510, 662
Sau3AI GATC 4 cut(s) 469, 674, 715, 945
Sau96I GGNCC 2 cut(s) 163, 632
ScaI AGTACT 1 cut(s) 924
SchI GAGTC 1 cut(s) 522
ScrFI CCNGG 2 cut(s) 342, 787
SduI GDGCHC 3 cut(s) 16, 42, 79
SfaNI GCATC 3 cut(s) 217, 298, 467
SfcI CTRYAG 1 cut(s) 321
SinI GGWCC 2 cut(s) 163, 632
SmiMI CAYNNNNRTG 4 cut(s) 47, 371, 542, 575
SnaBI TACGTA 1 cut(s) 736
SphI GCATGC 1 cut(s) 196
Sse9I AATT 6 cut(s) 171, 486, 613, 691, 855, 884
SsiI CCGC 4 cut(s) 23, 561, 630, 879
SspMI CTAG 6 cut(s) 6, 17, 80, 242, 519, 818
SstI GAGCTC 1 cut(s) 16
StyD4I CCNGG 2 cut(s) 340, 785
StyI CCWWGG 1 cut(s) 897
TaaI ACNGT 3 cut(s) 419, 605, 847
TaiI ACGT 1 cut(s) 738
TaqI TCGA 3 cut(s) 327, 807, 825
TaqII GACCGA 1 cut(s) 180
TasI AATT 6 cut(s) 171, 486, 613, 691, 855, 884
TatI WGTACW 2 cut(s) 153, 922
TfiI GAWTC 3 cut(s) 277, 496, 650
Tru1I TTAA 2 cut(s) 903, 969
Tru9I TTAA 2 cut(s) 903, 969
TscAI CASTG 8 cut(s) 71, 262, 289, 424, 498, 631, 852, 921
TseFI GTSAC 2 cut(s) 563, 847
TseI GCWGC 4 cut(s) 311, 320, 509, 661
Tsp45I GTSAC 2 cut(s) 563, 847
TspDTI ATGAA 2 cut(s) 642, 739
TspRI CASTG 8 cut(s) 71, 262, 289, 424, 498, 631, 852, 921
Van91I CCANNNNNTGG 1 cut(s) 646
VpaK11BI GGWCC 2 cut(s) 163, 632
XapI RAATTY 2 cut(s) 691, 884
XceI RCATGY 1 cut(s) 196
XcmI CCANNNNNNNNNTGG 1 cut(s) 904
XspI CTAG 6 cut(s) 6, 17, 80, 242, 519, 818
ZrmI AGTACT 1 cut(s) 924
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.