Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002264.1

Orthogroup ID

OG0015196

Physical Location & Seq

Genomic Coordinates Reverse (-)

88260 .. 91022

Gene Structure 2763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002264.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

atgtctagcagagctctagtggcagtagggatatttgggctcatatttgtaagccttacagggcagtgctatggggcactagaggtagggttctacgagagaaagtgccttgctgatgttgaaaaagtagtagctgatgtagtcaaggcaaagtacaaaatggaccgaacaattgctgctgctctcgttcgcatgcagttccacgattgctttgtgaatggatgtgatgcatccattctactagatggaagctccagtgagaaaacagctcctccgaatctcagtgtacggggttatgatgtcattgatgccgcaaaagctgcagttgaagttgtatgcccaggaaaggtctcctgctcggatatcattgtaatggctaccagagaagctgtatgtctgagtggaggagggcgatacagtgttcaaactgggagaagagatggctttgtatctcttgcatcaaatgttgatctcccagctccatcaatttcagtgaatcaatctgttgcagcatttgctagaaaaggactcaatgccattgacatggtttatcttcttggcggtcacaccattggggtggcacattgttttctcttccaagaccgtctgtacaatttccaaaacactggcggacctgaccggagcatggattcatcattgctgcgaaagctgagatctatctgccctcaaaattcagcaggcagtaaaactgctgatcttgaccagaacgagtacgtaccaagttcgttcattgttgacaactcattctacaagcaaatacgagccaggagaggagttcttcaaatcgaccaagagctagctttcgaccccataactcagtccacagtgacaacaattgccaatagttttggcttctccgtgaaatttgggcaggccatggttaagttgggagcagtgggagtacttacaggcacgcaaggggagatcaggaaatcatgcagggcagttaacactccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

326

Amino Acids

34.91

Weight (kDa)

8.64

Isoelectric Point (pI)

33.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22410
fragaria_vesca	FvH4_3g25270
malus_domestica	MD03G1147900.v1.1
prunus_persica	Prupe.6G132800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0046861
rosa_laevigata	RLG00000034451
rosa_multiflora	Rmu_sc0002264.1_g000029
rosa_roxburghii	Rroxscaffold_1G00034520
rosa_rugosa	Rorug05G0232300
rosa_samantha	Rh1BG405200 Rh1DG435700 Rh5AG311600 Rh5BG320600 Rh5CG346700 Rh5DG331300
rosa_wichuraiana	Rw5G029120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	312, 561, 630
AcsI	RAATTY	2 cut(s)	691, 884
AfaI	GTAC	6 cut(s)	155, 288, 611, 734, 738, 924
AfiI	CCNNNNNNNGG	2 cut(s)	346, 646
AgsI	TTSAA	4 cut(s)	122, 329, 425, 803
AjnI	CCWGG	2 cut(s)	340, 785
Alw21I	GWGCWC	1 cut(s)	16
Alw26I	GTCTC	1 cut(s)	355
AoxI	GGCC	1 cut(s)	894
ApeKI	GCWGC	5 cut(s)	176, 179, 320, 509, 661
ApoI	RAATTY	2 cut(s)	691, 884
AspS9I	GGNCC	2 cut(s)	163, 632
AsuNHI	GCTAGC	1 cut(s)	817
AvaII	GGWCC	2 cut(s)	163, 632
BaeGI	GKGCMC	1 cut(s)	79
BanII	GRGCYC	2 cut(s)	16, 42
Bbv12I	GWGCWC	1 cut(s)	16
BbvI	GCAGC	5 cut(s)	163, 166, 307, 521, 648
BccI	CCATC	3 cut(s)	239, 434, 490
BciT130I	CCWGG	2 cut(s)	342, 787
BcoDI	GTCTC	1 cut(s)	355
BfaI	CTAG	6 cut(s)	6, 17, 80, 242, 519, 818
BfmI	CTRYAG	1 cut(s)	321
BglII	AGATCT	1 cut(s)	674
BisI	GCNGC	6 cut(s)	177, 180, 312, 321, 510, 662
BlsI	GCNGC	6 cut(s)	178, 181, 313, 322, 511, 663
BmcAI	AGTACT	1 cut(s)	924
Bme1390I	CCNGG	2 cut(s)	342, 787
Bme18I	GGWCC	2 cut(s)	163, 632
BmgT120I	GGNCC	2 cut(s)	163, 632
BmrFI	CCNGG	2 cut(s)	342, 787
BmrI	ACTGGG	1 cut(s)	438
BmsI	GCATC	4 cut(s)	217, 239, 298, 467
BmtI	GCTAGC	1 cut(s)	821
BmuI	ACTGGG	1 cut(s)	438
BpmI	CTGGAG	1 cut(s)	238
BsaAI	YACGTR	1 cut(s)	736
BsaI	GGTCTC	1 cut(s)	355
BsaJI	CCNNGG	2 cut(s)	340, 897
BsaWI	WCCGGW	1 cut(s)	639
BsaXI	ACNNNNNCTCC	2 cut(s)	256, 286
Bsc4I	CCNNNNNNNGG	2 cut(s)	346, 646
Bse1I	ACTGG	3 cut(s)	255, 433, 631
Bse3DI	GCAATG	1 cut(s)	656
BseBI	CCWGG	2 cut(s)	342, 787
BseDI	CCNNGG	2 cut(s)	340, 897
BseGI	GGATG	2 cut(s)	227, 230
BseLI	CCNNNNNNNGG	2 cut(s)	346, 646
BseMI	GCAATG	1 cut(s)	656
BseMII	CTCAG	4 cut(s)	295, 389, 662, 851
BseNI	ACTGG	3 cut(s)	255, 433, 631
BseRI	GAGGAG	3 cut(s)	261, 420, 807
BseSI	GKGCMC	1 cut(s)	79
BseXI	GCAGC	5 cut(s)	163, 166, 307, 521, 648
BseYI	CCCAGC	1 cut(s)	475
BshFI	GGCC	1 cut(s)	896
BsiHKAI	GWGCWC	1 cut(s)	16
BsiSI	CCGG	1 cut(s)	640
BslI	CCNNNNNNNGG	2 cut(s)	346, 646
BsmAI	GTCTC	1 cut(s)	355
BsnI	GGCC	1 cut(s)	896
Bso31I	GGTCTC	1 cut(s)	355
Bsp1286I	GDGCHC	3 cut(s)	16, 42, 79
Bsp1407I	TGTACA	1 cut(s)	609
Bsp143I	GATC	4 cut(s)	469, 674, 715, 945
Bsp19I	CCATGG	1 cut(s)	897
BspACI	CCGC	3 cut(s)	312, 561, 630
BspANI	GGCC	1 cut(s)	896
BspCNI	CTCAG	4 cut(s)	294, 390, 663, 850
BspMAI	CTGCAG	1 cut(s)	325
BspOI	GCTAGC	1 cut(s)	821
BspTNI	GGTCTC	1 cut(s)	355
BsrDI	GCAATG	1 cut(s)	656
BsrGI	TGTACA	1 cut(s)	609
BsrI	ACTGG	3 cut(s)	255, 433, 631
BssECI	CCNNGG	2 cut(s)	340, 897
BssMI	GATC	4 cut(s)	469, 674, 715, 945
BssT1I	CCWWGG	1 cut(s)	897
Bst2UI	CCWGG	2 cut(s)	342, 787
Bst4CI	ACNGT	3 cut(s)	419, 605, 847
Bst6I	CTCTTC	2 cut(s)	430, 599
BstAPI	GCANNNNNTGC	2 cut(s)	320, 515
BstAUI	TGTACA	1 cut(s)	609
BstBAI	YACGTR	1 cut(s)	736
BstC8I	GCNNGC	5 cut(s)	194, 700, 819, 894, 935
BstDEI	CTNAG	4 cut(s)	281, 398, 671, 837
BstDSI	CCRYGG	1 cut(s)	897
BstF5I	GGATG	2 cut(s)	227, 230
BstKTI	GATC	4 cut(s)	472, 677, 718, 948
BstMAI	GTCTC	1 cut(s)	355
BstMBI	GATC	4 cut(s)	469, 674, 715, 945
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 317, 320, 515, 667
BstNI	CCWGG	2 cut(s)	342, 787
BstNSI	RCATGY	1 cut(s)	196
BstSCI	CCNGG	2 cut(s)	340, 785
BstSFI	CTRYAG	1 cut(s)	321
BstSLI	GKGCMC	1 cut(s)	79
BstSNI	TACGTA	1 cut(s)	736
BstV1I	GCAGC	5 cut(s)	163, 166, 307, 521, 648
BstX2I	RGATCY	1 cut(s)	674
BstXI	CCANNNNNNTGG	3 cut(s)	544, 577, 626
BstYI	RGATCY	1 cut(s)	674
BsuRI	GGCC	1 cut(s)	896
BtgI	CCRYGG	1 cut(s)	897
BtsCI	GGATG	2 cut(s)	227, 230
BtsI	GCAGTG	2 cut(s)	71, 921
BtsIMutI	CAGTG	8 cut(s)	71, 262, 289, 424, 498, 624, 852, 921
Cac8I	GCNNGC	5 cut(s)	194, 700, 819, 894, 935
Cfr13I	GGNCC	2 cut(s)	163, 632
Csp6I	GTAC	6 cut(s)	154, 287, 610, 733, 737, 923
CviAII	CATG	5 cut(s)	193, 544, 646, 898, 957
CviQI	GTAC	6 cut(s)	154, 287, 610, 733, 737, 923
DdeI	CTNAG	4 cut(s)	281, 398, 671, 837
DpnI	GATC	4 cut(s)	471, 676, 717, 947
DpnII	GATC	4 cut(s)	469, 674, 715, 945
Eam1104I	CTCTTC	2 cut(s)	430, 599
EarI	CTCTTC	2 cut(s)	430, 599
EciI	GGCGGA	1 cut(s)	645
Ecl136II	GAGCTC	1 cut(s)	14
Eco105I	TACGTA	1 cut(s)	736
Eco130I	CCWWGG	1 cut(s)	897
Eco24I	GRGCYC	2 cut(s)	16, 42
Eco31I	GGTCTC	1 cut(s)	355
Eco32I	GATATC	1 cut(s)	364
Eco47I	GGWCC	2 cut(s)	163, 632
Eco53kI	GAGCTC	1 cut(s)	14
EcoICRI	GAGCTC	1 cut(s)	14
EcoRII	CCWGG	2 cut(s)	340, 785
EcoRV	GATATC	1 cut(s)	364
EcoT14I	CCWWGG	1 cut(s)	897
EcoT22I	ATGCAT	1 cut(s)	232
EcoT38I	GRGCYC	2 cut(s)	16, 42
ErhI	CCWWGG	1 cut(s)	897
FaeI	CATG	5 cut(s)	196, 547, 649, 901, 960
FatI	CATG	5 cut(s)	192, 543, 645, 897, 956
Fnu4HI	GCNGC	6 cut(s)	177, 180, 312, 321, 510, 662
FokI	GGATG	2 cut(s)	217, 234
FriOI	GRGCYC	2 cut(s)	16, 42
Fsp4HI	GCNGC	6 cut(s)	177, 180, 312, 321, 510, 662
FspBI	CTAG	6 cut(s)	6, 17, 80, 242, 519, 818
GluI	GCNGC	6 cut(s)	177, 180, 312, 321, 510, 662
GsaI	CCCAGC	1 cut(s)	479
GsuI	CTGGAG	1 cut(s)	238
HaeIII	GGCC	1 cut(s)	896
HapII	CCGG	1 cut(s)	640
Hin1II	CATG	5 cut(s)	196, 547, 649, 901, 960
HincII	GTYRAC	2 cut(s)	757, 970
HindII	GTYRAC	2 cut(s)	757, 970
HinfI	GANTC	4 cut(s)	277, 496, 528, 650
HpaI	GTTAAC	1 cut(s)	970
HpaII	CCGG	1 cut(s)	640
Hpy166II	GTNNAC	4 cut(s)	287, 757, 843, 970
Hpy188I	TCNGA	3 cut(s)	276, 361, 399
Hpy188III	TCNNGA	2 cut(s)	719, 949
Hpy8I	GTNNAC	4 cut(s)	287, 757, 843, 970
HpyCH4III	ACNGT	3 cut(s)	419, 605, 847
HpyCH4IV	ACGT	1 cut(s)	735
HpyCH4V	TGCA	6 cut(s)	196, 230, 323, 458, 509, 960
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 317, 320, 515, 667
HpyF3I	CTNAG	4 cut(s)	281, 398, 671, 837
HpySE526I	ACGT	1 cut(s)	735
Hsp92II	CATG	5 cut(s)	196, 547, 649, 901, 960
KspAI	GTTAAC	1 cut(s)	970
Kzo9I	GATC	4 cut(s)	469, 674, 715, 945
LmnI	GCTCC	5 cut(s)	257, 274, 484, 642, 911
Lsp1109I	GCAGC	5 cut(s)	163, 166, 307, 521, 648
LweI	GCATC	4 cut(s)	217, 239, 298, 467
MaeI	CTAG	6 cut(s)	6, 17, 80, 242, 519, 818
MaeII	ACGT	1 cut(s)	735
MaeIII	GTNAC	2 cut(s)	563, 847
MalI	GATC	4 cut(s)	471, 676, 717, 947
MboI	GATC	4 cut(s)	469, 674, 715, 945
MboII	GAAGA	4 cut(s)	447, 545, 586, 791
MfeI	CAATTG	2 cut(s)	171, 855
MflI	RGATCY	1 cut(s)	674
MhlI	GDGCHC	3 cut(s)	16, 42, 79
MluCI	AATT	6 cut(s)	171, 486, 613, 691, 855, 884
MlyI	GAGTC	1 cut(s)	522
MnlI	CCTC	6 cut(s)	76, 282, 398, 401, 696, 785
Mph1103I	ATGCAT	1 cut(s)	232
MseI	TTAA	2 cut(s)	903, 969
MslI	CAYNNNNRTG	3 cut(s)	371, 542, 575
MspI	CCGG	1 cut(s)	640
MspR9I	CCNGG	2 cut(s)	342, 787
MunI	CAATTG	2 cut(s)	171, 855
MvaI	CCWGG	2 cut(s)	342, 787
MwoI	GCNNNNNNNGC	5 cut(s)	20, 317, 320, 515, 667
NcoI	CCATGG	1 cut(s)	897
NdeII	GATC	4 cut(s)	469, 674, 715, 945
NheI	GCTAGC	1 cut(s)	817
NlaIII	CATG	5 cut(s)	196, 547, 649, 901, 960
NmuCI	GTSAC	2 cut(s)	563, 847
NsiI	ATGCAT	1 cut(s)	232
NspI	RCATGY	1 cut(s)	196
PaeI	GCATGC	1 cut(s)	196
PfeI	GAWTC	3 cut(s)	277, 496, 650
PkrI	GCNGC	6 cut(s)	178, 181, 313, 322, 511, 663
PleI	GAGTC	1 cut(s)	522
PpsI	GAGTC	1 cut(s)	522
Ppu21I	YACGTR	1 cut(s)	736
Psp124BI	GAGCTC	1 cut(s)	16
Psp6I	CCWGG	2 cut(s)	340, 785
PspFI	CCCAGC	1 cut(s)	475
PspGI	CCWGG	2 cut(s)	340, 785
PspPI	GGNCC	2 cut(s)	163, 632
PstI	CTGCAG	1 cut(s)	325
PsuI	RGATCY	1 cut(s)	674
RsaI	GTAC	6 cut(s)	155, 288, 611, 734, 738, 924
RsaNI	GTAC	6 cut(s)	154, 287, 610, 733, 737, 923
RseI	CAYNNNNRTG	3 cut(s)	371, 542, 575
SacI	GAGCTC	1 cut(s)	16
SaqAI	TTAA	2 cut(s)	903, 969
SatI	GCNGC	6 cut(s)	177, 180, 312, 321, 510, 662
Sau3AI	GATC	4 cut(s)	469, 674, 715, 945
Sau96I	GGNCC	2 cut(s)	163, 632
ScaI	AGTACT	1 cut(s)	924
SchI	GAGTC	1 cut(s)	522
ScrFI	CCNGG	2 cut(s)	342, 787
SduI	GDGCHC	3 cut(s)	16, 42, 79
SfaNI	GCATC	4 cut(s)	217, 239, 298, 467
SfcI	CTRYAG	1 cut(s)	321
SinI	GGWCC	2 cut(s)	163, 632
SmiMI	CAYNNNNRTG	3 cut(s)	371, 542, 575
SnaBI	TACGTA	1 cut(s)	736
SphI	GCATGC	1 cut(s)	196
Sse9I	AATT	6 cut(s)	171, 486, 613, 691, 855, 884
SsiI	CCGC	3 cut(s)	312, 561, 630
SspMI	CTAG	6 cut(s)	6, 17, 80, 242, 519, 818
SstI	GAGCTC	1 cut(s)	16
StyD4I	CCNGG	2 cut(s)	340, 785
StyI	CCWWGG	1 cut(s)	897
TaaI	ACNGT	3 cut(s)	419, 605, 847
TaiI	ACGT	1 cut(s)	738
TaqI	TCGA	2 cut(s)	807, 825
TaqII	GACCGA	1 cut(s)	180
TasI	AATT	6 cut(s)	171, 486, 613, 691, 855, 884
TatI	WGTACW	3 cut(s)	153, 609, 922
TauI	GCSGC	1 cut(s)	314
TfiI	GAWTC	3 cut(s)	277, 496, 650
Tru1I	TTAA	2 cut(s)	903, 969
Tru9I	TTAA	2 cut(s)	903, 969
TscAI	CASTG	8 cut(s)	71, 262, 289, 424, 498, 631, 852, 921
TseFI	GTSAC	2 cut(s)	563, 847
TseI	GCWGC	5 cut(s)	176, 179, 320, 509, 661
Tsp45I	GTSAC	2 cut(s)	563, 847
TspDTI	ATGAA	2 cut(s)	642, 739
TspGWI	ACGGA	1 cut(s)	868
TspRI	CASTG	8 cut(s)	71, 262, 289, 424, 498, 631, 852, 921
VpaK11BI	GGWCC	2 cut(s)	163, 632
XapI	RAATTY	2 cut(s)	691, 884
XceI	RCATGY	1 cut(s)	196
XcmI	CCANNNNNNNNNTGG	1 cut(s)	904
XspI	CTAG	6 cut(s)	6, 17, 80, 242, 519, 818
ZrmI	AGTACT	1 cut(s)	924
Zsp2I	ATGCAT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.