Rh1DG435700

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0015196
Physical Location & Seq
Forward (+)
64687058 .. 64687856
799 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG435700.1

Sequence Viewer

Length: 471 bp
ATGTGTTGGGCTTTGGGCCTACCTTCTAGAGTTAGGACCGGAAGAGGTTTGGGTGGCTCAGTTGACTGTATCCTTCCGGGATGTGATGCGTCCATTCTACTAGATGGAAGCTCCAGTGAGAAAACAGCTCCTCCAAATCTCAGTGTACGGGGTTATGATGTCATTGATGCTGCAAAAGCTGCAGTCGAAGTTGTATGCCCAGGAAAGGTCTCCTGCTCGGATATCATTGTAATGGCTACCAGAGAAGCTGTATGTCTGAGTGGAGGAGGGCGATACAGTGTTCAAACTGGGAGAAGAGATGGCTTTGTATCTCTTGCATCAAATGTTGATCTCCCAGCTCCATCAATTTCAGTGAATCAATCTGTTGCAGCATTTGCTAGAAAAGGACTCAATGCCATTGACATGGTTTATCTTCTTGATTTAAGCATAATTACACCTTATCACTGCTCAATTGGCAGTTTGACAATATGA

Protein Analysis

156

Amino Acids

16.12

Weight (kDa)

6.53

Isoelectric Point (pI)

38.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 22 - 149 2.6e-39 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22410
fragaria_vesca FvH4_3g25270
malus_domestica MD03G1147900.v1.1
prunus_persica Prupe.6G132800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046861
rosa_laevigata RLG00000034451
rosa_multiflora Rmu_sc0002264.1_g000029
rosa_roxburghii Rroxscaffold_1G00034520
rosa_rugosa Rorug05G0232300
rosa_samantha Rh1BG405200 Rh1DG435700 Rh5AG311600 Rh5BG320600 Rh5CG346700 Rh5DG331300
rosa_wichuraiana Rw5G029120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 147
AfiI CCNNNNNNNGG 1 cut(s) 205
AgsI TTSAA 1 cut(s) 284
AjnI CCWGG 1 cut(s) 199
AluBI AGCT 5 cut(s) 111, 128, 179, 248, 338
AluI AGCT 5 cut(s) 111, 128, 179, 248, 338
Alw26I GTCTC 1 cut(s) 214
AoxI GGCC 1 cut(s) 16
ApeKI GCWGC 3 cut(s) 170, 179, 368
AspS9I GGNCC 2 cut(s) 16, 36
AsuC2I CCSGG 1 cut(s) 78
AvaII GGWCC 1 cut(s) 36
BbvI GCAGC 3 cut(s) 157, 166, 380
BccI CCATC 3 cut(s) 98, 293, 349
BciT130I CCWGG 1 cut(s) 201
BciVI GTATCC 1 cut(s) 80
BcnI CCSGG 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 214
BfaI CTAG 3 cut(s) 27, 101, 378
BfmI CTRYAG 1 cut(s) 180
BfuI GTATCC 1 cut(s) 80
BisI GCNGC 3 cut(s) 171, 180, 369
BlsI GCNGC 3 cut(s) 172, 181, 370
Bme1390I CCNGG 2 cut(s) 78, 201
Bme18I GGWCC 1 cut(s) 36
BmgT120I GGNCC 2 cut(s) 16, 36
BmrFI CCNGG 2 cut(s) 78, 201
BmrI ACTGGG 1 cut(s) 297
BmsI GCATC 3 cut(s) 76, 157, 326
BmuI ACTGGG 1 cut(s) 297
BpmI CTGGAG 1 cut(s) 97
BpuMI CCSGG 1 cut(s) 78
BsaI GGTCTC 1 cut(s) 214
BsaJI CCNNGG 1 cut(s) 199
BsaWI WCCGGW 1 cut(s) 38
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse1I ACTGG 2 cut(s) 114, 292
BseBI CCWGG 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 199
BseGI GGATG 1 cut(s) 86
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMII CTCAG 3 cut(s) 72, 154, 248
BseNI ACTGG 2 cut(s) 114, 292
BseRI GAGGAG 2 cut(s) 120, 279
BseXI GCAGC 3 cut(s) 157, 166, 380
BseYI CCCAGC 1 cut(s) 334
BshFI GGCC 1 cut(s) 18
BsiSI CCGG 2 cut(s) 39, 77
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 214
BsnI GGCC 1 cut(s) 18
Bso31I GGTCTC 1 cut(s) 214
Bsp143I GATC 1 cut(s) 328
BspANI GGCC 1 cut(s) 18
BspCNI CTCAG 3 cut(s) 71, 153, 249
BspMAI CTGCAG 1 cut(s) 184
BspTNI GGTCTC 1 cut(s) 214
BsrI ACTGG 2 cut(s) 114, 292
BssECI CCNNGG 1 cut(s) 199
BssMI GATC 1 cut(s) 328
Bst2UI CCWGG 1 cut(s) 201
Bst4CI ACNGT 2 cut(s) 68, 278
Bst6I CTCTTC 2 cut(s) 37, 289
BstAPI GCANNNNNTGC 2 cut(s) 179, 374
BstDEI CTNAG 3 cut(s) 58, 140, 257
BstF5I GGATG 1 cut(s) 86
BstKTI GATC 1 cut(s) 331
BstMAI GTCTC 1 cut(s) 214
BstMBI GATC 1 cut(s) 328
BstMWI GCNNNNNNNGC 4 cut(s) 176, 179, 374, 453
BstNI CCWGG 1 cut(s) 201
BstSCI CCNGG 2 cut(s) 76, 199
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 3 cut(s) 157, 166, 380
BstXI CCANNNNNNTGG 1 cut(s) 403
BsuI GTATCC 1 cut(s) 80
BsuRI GGCC 1 cut(s) 18
BtsCI GGATG 1 cut(s) 86
BtsI GCAGTG 1 cut(s) 442
BtsIMutI CAGTG 5 cut(s) 121, 148, 283, 357, 442
Cfr13I GGNCC 2 cut(s) 16, 36
CseI GACGC 1 cut(s) 78
Csp6I GTAC 1 cut(s) 146
CviAII CATG 1 cut(s) 403
CviQI GTAC 1 cut(s) 146
DdeI CTNAG 3 cut(s) 58, 140, 257
DpnI GATC 1 cut(s) 330
DpnII GATC 1 cut(s) 328
Eam1104I CTCTTC 2 cut(s) 37, 289
EarI CTCTTC 2 cut(s) 37, 289
Eco31I GGTCTC 1 cut(s) 214
Eco32I GATATC 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 36
EcoRII CCWGG 1 cut(s) 199
EcoRV GATATC 1 cut(s) 223
FaeI CATG 1 cut(s) 406
FaiI YATR 6 cut(s) 156, 196, 253, 404, 428, 469
FatI CATG 1 cut(s) 402
Fnu4HI GCNGC 3 cut(s) 171, 180, 369
FokI GGATG 1 cut(s) 93
Fsp4HI GCNGC 3 cut(s) 171, 180, 369
FspBI CTAG 3 cut(s) 27, 101, 378
GluI GCNGC 3 cut(s) 171, 180, 369
GsaI CCCAGC 1 cut(s) 338
GsuI CTGGAG 1 cut(s) 97
HaeIII GGCC 1 cut(s) 18
HapII CCGG 2 cut(s) 39, 77
HgaI GACGC 1 cut(s) 78
Hin1II CATG 1 cut(s) 406
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 2 cut(s) 355, 387
HpaII CCGG 2 cut(s) 39, 77
Hpy166II GTNNAC 2 cut(s) 64, 146
Hpy188I TCNGA 2 cut(s) 220, 258
Hpy188III TCNNGA 2 cut(s) 27, 416
Hpy8I GTNNAC 2 cut(s) 64, 146
HpyAV CCTTC 2 cut(s) 33, 83
HpyCH4III ACNGT 2 cut(s) 68, 278
HpyCH4V TGCA 4 cut(s) 173, 182, 317, 368
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 179, 374, 453
HpyF3I CTNAG 3 cut(s) 58, 140, 257
Hsp92II CATG 1 cut(s) 406
Kzo9I GATC 1 cut(s) 328
LmnI GCTCC 3 cut(s) 116, 133, 343
LpnPI CCDG 9 cut(s) 52, 90, 127, 186, 213, 226, 253, 273, 348
Lsp1109I GCAGC 3 cut(s) 157, 166, 380
LweI GCATC 3 cut(s) 76, 157, 326
MaeI CTAG 3 cut(s) 27, 101, 378
MalI GATC 1 cut(s) 330
MboI GATC 1 cut(s) 328
MboII GAAGA 3 cut(s) 54, 306, 404
MfeI CAATTG 1 cut(s) 450
MluCI AATT 3 cut(s) 345, 429, 450
MlyI GAGTC 1 cut(s) 381
MnlI CCTC 4 cut(s) 38, 141, 257, 260
MseI TTAA 1 cut(s) 422
MslI CAYNNNNRTG 2 cut(s) 230, 401
MspI CCGG 2 cut(s) 39, 77
MspR9I CCNGG 2 cut(s) 78, 201
MunI CAATTG 1 cut(s) 450
MvaI CCWGG 1 cut(s) 201
MwoI GCNNNNNNNGC 4 cut(s) 176, 179, 374, 453
NciI CCSGG 1 cut(s) 78
NdeII GATC 1 cut(s) 328
NlaIII CATG 1 cut(s) 406
PfeI GAWTC 1 cut(s) 355
PfoI TCCNGGA 1 cut(s) 76
PkrI GCNGC 3 cut(s) 172, 181, 370
PleI GAGTC 1 cut(s) 381
PpsI GAGTC 1 cut(s) 381
Psp6I CCWGG 1 cut(s) 199
PspFI CCCAGC 1 cut(s) 334
PspGI CCWGG 1 cut(s) 199
PspPI GGNCC 2 cut(s) 16, 36
PstI CTGCAG 1 cut(s) 184
RsaI GTAC 1 cut(s) 147
RsaNI GTAC 1 cut(s) 146
RseI CAYNNNNRTG 2 cut(s) 230, 401
SaqAI TTAA 1 cut(s) 422
SatI GCNGC 3 cut(s) 171, 180, 369
Sau3AI GATC 1 cut(s) 328
Sau96I GGNCC 2 cut(s) 16, 36
SchI GAGTC 1 cut(s) 381
ScrFI CCNGG 2 cut(s) 78, 201
SetI ASST 9 cut(s) 25, 49, 113, 130, 181, 210, 250, 340, 439
SfaNI GCATC 3 cut(s) 76, 157, 326
SfcI CTRYAG 1 cut(s) 180
SinI GGWCC 1 cut(s) 36
SmiMI CAYNNNNRTG 2 cut(s) 230, 401
Sse9I AATT 3 cut(s) 345, 429, 450
SspMI CTAG 3 cut(s) 27, 101, 378
StyD4I CCNGG 2 cut(s) 76, 199
TaaI ACNGT 2 cut(s) 68, 278
TaqI TCGA 1 cut(s) 186
TasI AATT 3 cut(s) 345, 429, 450
TfiI GAWTC 1 cut(s) 355
Tru1I TTAA 1 cut(s) 422
Tru9I TTAA 1 cut(s) 422
TscAI CASTG 5 cut(s) 121, 148, 283, 357, 449
TseI GCWGC 3 cut(s) 170, 179, 368
TspRI CASTG 5 cut(s) 121, 148, 283, 357, 449
VpaK11BI GGWCC 1 cut(s) 36
XbaI TCTAGA 1 cut(s) 26
XspI CTAG 3 cut(s) 27, 101, 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.