Rh5AG311600

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0015196
Physical Location & Seq
Reverse (-)
44968123 .. 44970427
2305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG311600.1

Sequence Viewer

Length: 807 bp
ATGAAAATGTCTAGCAGAGCTCTAGTGGCAGTAGGGATATTTGGGCTCATATTTGTAAGCCTTACAGGGCAGTGCTATGGGGCACTAGAGGTAGGGTTCTACGAGAGAAAGTGCCTTGCTGATGTTGAAAAAGTAGTAGCTGATGTAGTCAAGGCAAAGTACAAAATGGACCGAACAATTGCTGCTGCTCTCGTTCGCATGCAGTTCCACGATTGCTTTGTGAATAGTGGAGGAGGGCGATACAGTGTTCAAACTGGGAGAAGAGATGGCTTTGTATCTCTTGCATCAAATGTTGATCTCCCAGCTCCATCAATTTCAGTGAATCAATCTGTTGCAGCATTTGCTAGAAAAGGACTCAATGCCATTGACATGGTTTATCTTCTTGGCGGTCACACCATTGGGGTGGCACATTGTTTTCTCTTCCAAGACCGTCTGTACAATTTCCAAAACACTGGCGGACCTGACCGGAGCATGGATTCATCATTGCTGCGAAAGCTGAGATCTATCTGCCCTCAAAATTCAGCAGGCAGTAAAACTGCTGATCTTGACCAGAACGAGTACGTACCAAGTTCGTTCATTGTTGACAACTCATTCTACAAGCAAATACGAGCCAGGAGAGGAGTTCTTCAAATCGACCAAGAGCTAGCTTTCGACCCCATAACTCAGTCCACAGTGACAACAATTGCCAATAGTTTTGGCTTCTCCGTGAAATTTGGGCAGGCCATGGTTAAGTTGGGAGCAGTGGGAGTACTTACAGGGACGCAAGGGGAGATCAGGAAATCATGCAGAGCAGTTAACACTCCTTGA

Protein Analysis

268

Amino Acids

29.09

Weight (kDa)

9.35

Isoelectric Point (pI)

32.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 75 - 231 1e-38 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22410
fragaria_vesca FvH4_3g25270
malus_domestica MD03G1147900.v1.1
prunus_persica Prupe.6G132800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046861
rosa_laevigata RLG00000034451
rosa_multiflora Rmu_sc0002264.1_g000029
rosa_roxburghii Rroxscaffold_1G00034520
rosa_rugosa Rorug05G0232300
rosa_samantha Rh1BG405200 Rh1DG435700 Rh5AG311600 Rh5BG320600 Rh5CG346700 Rh5DG331300
rosa_wichuraiana Rw5G029120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 387, 456
AcsI RAATTY 2 cut(s) 517, 710
AfaI GTAC 5 cut(s) 161, 437, 560, 564, 750
AfiI CCNNNNNNNGG 1 cut(s) 472
AgsI TTSAA 3 cut(s) 128, 251, 629
AjnI CCWGG 1 cut(s) 611
AluBI AGCT 6 cut(s) 20, 140, 305, 496, 643, 647
AluI AGCT 6 cut(s) 20, 140, 305, 496, 643, 647
Alw21I GWGCWC 1 cut(s) 22
AoxI GGCC 1 cut(s) 720
ApeKI GCWGC 4 cut(s) 182, 185, 335, 487
ApoI RAATTY 2 cut(s) 517, 710
AspS9I GGNCC 2 cut(s) 169, 458
AsuNHI GCTAGC 1 cut(s) 643
AvaII GGWCC 2 cut(s) 169, 458
BaeGI GKGCMC 1 cut(s) 85
BanII GRGCYC 2 cut(s) 22, 48
Bbv12I GWGCWC 1 cut(s) 22
BbvI GCAGC 4 cut(s) 169, 172, 347, 474
BccI CCATC 2 cut(s) 260, 316
BciT130I CCWGG 1 cut(s) 613
BfaI CTAG 5 cut(s) 12, 23, 86, 345, 644
BglII AGATCT 1 cut(s) 500
BisI GCNGC 4 cut(s) 183, 186, 336, 488
BlsI GCNGC 4 cut(s) 184, 187, 337, 489
BmcAI AGTACT 1 cut(s) 750
Bme1390I CCNGG 1 cut(s) 613
Bme18I GGWCC 2 cut(s) 169, 458
BmgT120I GGNCC 2 cut(s) 169, 458
BmrFI CCNGG 1 cut(s) 613
BmrI ACTGGG 1 cut(s) 264
BmsI GCATC 1 cut(s) 293
BmtI GCTAGC 1 cut(s) 647
BmuI ACTGGG 1 cut(s) 264
BsaAI YACGTR 1 cut(s) 562
BsaJI CCNNGG 1 cut(s) 723
BsaWI WCCGGW 1 cut(s) 465
Bsc4I CCNNNNNNNGG 1 cut(s) 472
Bse1I ACTGG 2 cut(s) 259, 457
Bse3DI GCAATG 1 cut(s) 482
BseBI CCWGG 1 cut(s) 613
BseDI CCNNGG 1 cut(s) 723
BseLI CCNNNNNNNGG 1 cut(s) 472
BseMI GCAATG 1 cut(s) 482
BseMII CTCAG 2 cut(s) 488, 677
BseNI ACTGG 2 cut(s) 259, 457
BseRI GAGGAG 2 cut(s) 246, 633
BseSI GKGCMC 1 cut(s) 85
BseXI GCAGC 4 cut(s) 169, 172, 347, 474
BseYI CCCAGC 1 cut(s) 301
BshFI GGCC 1 cut(s) 722
BsiHKAI GWGCWC 1 cut(s) 22
BsiSI CCGG 1 cut(s) 466
BslFI GGGAC 1 cut(s) 772
BslI CCNNNNNNNGG 1 cut(s) 472
BsmFI GGGAC 1 cut(s) 772
BsnI GGCC 1 cut(s) 722
Bsp1286I GDGCHC 3 cut(s) 22, 48, 85
Bsp1407I TGTACA 1 cut(s) 435
Bsp143I GATC 4 cut(s) 295, 500, 541, 771
Bsp19I CCATGG 1 cut(s) 723
BspACI CCGC 2 cut(s) 387, 456
BspANI GGCC 1 cut(s) 722
BspCNI CTCAG 2 cut(s) 489, 676
BspOI GCTAGC 1 cut(s) 647
BsrDI GCAATG 1 cut(s) 482
BsrGI TGTACA 1 cut(s) 435
BsrI ACTGG 2 cut(s) 259, 457
BssECI CCNNGG 1 cut(s) 723
BssMI GATC 4 cut(s) 295, 500, 541, 771
BssT1I CCWWGG 1 cut(s) 723
Bst2UI CCWGG 1 cut(s) 613
Bst4CI ACNGT 3 cut(s) 245, 431, 673
Bst6I CTCTTC 2 cut(s) 256, 425
BstAPI GCANNNNNTGC 1 cut(s) 341
BstAUI TGTACA 1 cut(s) 435
BstBAI YACGTR 1 cut(s) 562
BstC8I GCNNGC 4 cut(s) 200, 526, 645, 720
BstDEI CTNAG 2 cut(s) 497, 663
BstDSI CCRYGG 1 cut(s) 723
BstKTI GATC 4 cut(s) 298, 503, 544, 774
BstMBI GATC 4 cut(s) 295, 500, 541, 771
BstMWI GCNNNNNNNGC 3 cut(s) 26, 341, 493
BstNI CCWGG 1 cut(s) 613
BstNSI RCATGY 1 cut(s) 202
BstSCI CCNGG 1 cut(s) 611
BstSLI GKGCMC 1 cut(s) 85
BstSNI TACGTA 1 cut(s) 562
BstV1I GCAGC 4 cut(s) 169, 172, 347, 474
BstX2I RGATCY 1 cut(s) 500
BstXI CCANNNNNNTGG 3 cut(s) 370, 403, 452
BstYI RGATCY 1 cut(s) 500
BsuRI GGCC 1 cut(s) 722
BtgI CCRYGG 1 cut(s) 723
BtsI GCAGTG 2 cut(s) 77, 747
BtsIMutI CAGTG 6 cut(s) 77, 250, 324, 450, 678, 747
Cac8I GCNNGC 4 cut(s) 200, 526, 645, 720
Cfr13I GGNCC 2 cut(s) 169, 458
CseI GACGC 1 cut(s) 769
Csp6I GTAC 5 cut(s) 160, 436, 559, 563, 749
CviAII CATG 5 cut(s) 199, 370, 472, 724, 783
CviQI GTAC 5 cut(s) 160, 436, 559, 563, 749
DdeI CTNAG 2 cut(s) 497, 663
DpnI GATC 4 cut(s) 297, 502, 543, 773
DpnII GATC 4 cut(s) 295, 500, 541, 771
Eam1104I CTCTTC 2 cut(s) 256, 425
EarI CTCTTC 2 cut(s) 256, 425
EciI GGCGGA 1 cut(s) 471
Ecl136II GAGCTC 1 cut(s) 20
Eco105I TACGTA 1 cut(s) 562
Eco130I CCWWGG 1 cut(s) 723
Eco24I GRGCYC 2 cut(s) 22, 48
Eco47I GGWCC 2 cut(s) 169, 458
Eco53kI GAGCTC 1 cut(s) 20
EcoICRI GAGCTC 1 cut(s) 20
EcoRII CCWGG 1 cut(s) 611
EcoT14I CCWWGG 1 cut(s) 723
EcoT38I GRGCYC 2 cut(s) 22, 48
ErhI CCWWGG 1 cut(s) 723
FaeI CATG 5 cut(s) 202, 373, 475, 727, 786
FaiI YATR 8 cut(s) 50, 78, 200, 371, 473, 659, 725, 784
FaqI GGGAC 1 cut(s) 772
FatI CATG 5 cut(s) 198, 369, 471, 723, 782
Fnu4HI GCNGC 4 cut(s) 183, 186, 336, 488
FriOI GRGCYC 2 cut(s) 22, 48
Fsp4HI GCNGC 4 cut(s) 183, 186, 336, 488
FspBI CTAG 5 cut(s) 12, 23, 86, 345, 644
GluI GCNGC 4 cut(s) 183, 186, 336, 488
GsaI CCCAGC 1 cut(s) 305
HaeIII GGCC 1 cut(s) 722
HapII CCGG 1 cut(s) 466
HgaI GACGC 1 cut(s) 769
Hin1II CATG 5 cut(s) 202, 373, 475, 727, 786
HincII GTYRAC 2 cut(s) 583, 796
HindII GTYRAC 2 cut(s) 583, 796
HinfI GANTC 3 cut(s) 322, 354, 476
HpaI GTTAAC 1 cut(s) 796
HpaII CCGG 1 cut(s) 466
Hpy166II GTNNAC 3 cut(s) 583, 669, 796
Hpy188III TCNNGA 2 cut(s) 545, 775
Hpy8I GTNNAC 3 cut(s) 583, 669, 796
HpyCH4III ACNGT 3 cut(s) 245, 431, 673
HpyCH4IV ACGT 1 cut(s) 561
HpyCH4V TGCA 4 cut(s) 202, 284, 335, 786
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 341, 493
HpyF3I CTNAG 2 cut(s) 497, 663
HpySE526I ACGT 1 cut(s) 561
Hsp92II CATG 5 cut(s) 202, 373, 475, 727, 786
KspAI GTTAAC 1 cut(s) 796
Kzo9I GATC 4 cut(s) 295, 500, 541, 771
LmnI GCTCC 3 cut(s) 310, 468, 737
Lsp1109I GCAGC 4 cut(s) 169, 172, 347, 474
LweI GCATC 1 cut(s) 293
MaeI CTAG 5 cut(s) 12, 23, 86, 345, 644
MaeII ACGT 1 cut(s) 561
MaeIII GTNAC 2 cut(s) 389, 673
MalI GATC 4 cut(s) 297, 502, 543, 773
MboI GATC 4 cut(s) 295, 500, 541, 771
MboII GAAGA 4 cut(s) 273, 371, 412, 617
MfeI CAATTG 2 cut(s) 177, 681
MflI RGATCY 1 cut(s) 500
MhlI GDGCHC 3 cut(s) 22, 48, 85
MluCI AATT 6 cut(s) 177, 312, 439, 517, 681, 710
MlyI GAGTC 1 cut(s) 348
MnlI CCTC 5 cut(s) 82, 224, 227, 522, 611
MseI TTAA 2 cut(s) 729, 795
MslI CAYNNNNRTG 2 cut(s) 368, 401
MspI CCGG 1 cut(s) 466
MspR9I CCNGG 1 cut(s) 613
MunI CAATTG 2 cut(s) 177, 681
MvaI CCWGG 1 cut(s) 613
MwoI GCNNNNNNNGC 3 cut(s) 26, 341, 493
NcoI CCATGG 1 cut(s) 723
NdeII GATC 4 cut(s) 295, 500, 541, 771
NheI GCTAGC 1 cut(s) 643
NlaIII CATG 5 cut(s) 202, 373, 475, 727, 786
NmuCI GTSAC 2 cut(s) 389, 673
NspI RCATGY 1 cut(s) 202
PaeI GCATGC 1 cut(s) 202
PfeI GAWTC 2 cut(s) 322, 476
PkrI GCNGC 4 cut(s) 184, 187, 337, 489
PleI GAGTC 1 cut(s) 348
PpsI GAGTC 1 cut(s) 348
Ppu21I YACGTR 1 cut(s) 562
Psp124BI GAGCTC 1 cut(s) 22
Psp6I CCWGG 1 cut(s) 611
PspFI CCCAGC 1 cut(s) 301
PspGI CCWGG 1 cut(s) 611
PspPI GGNCC 2 cut(s) 169, 458
PsuI RGATCY 1 cut(s) 500
RsaI GTAC 5 cut(s) 161, 437, 560, 564, 750
RsaNI GTAC 5 cut(s) 160, 436, 559, 563, 749
RseI CAYNNNNRTG 2 cut(s) 368, 401
SacI GAGCTC 1 cut(s) 22
SaqAI TTAA 2 cut(s) 729, 795
SatI GCNGC 4 cut(s) 183, 186, 336, 488
Sau3AI GATC 4 cut(s) 295, 500, 541, 771
Sau96I GGNCC 2 cut(s) 169, 458
ScaI AGTACT 1 cut(s) 750
SchI GAGTC 1 cut(s) 348
ScrFI CCNGG 1 cut(s) 613
SduI GDGCHC 3 cut(s) 22, 48, 85
SetI ASST 9 cut(s) 22, 93, 142, 307, 463, 498, 564, 645, 649
SfaNI GCATC 1 cut(s) 293
SinI GGWCC 2 cut(s) 169, 458
SmiMI CAYNNNNRTG 2 cut(s) 368, 401
SnaBI TACGTA 1 cut(s) 562
SphI GCATGC 1 cut(s) 202
Sse9I AATT 6 cut(s) 177, 312, 439, 517, 681, 710
SsiI CCGC 2 cut(s) 387, 456
SspMI CTAG 5 cut(s) 12, 23, 86, 345, 644
SstI GAGCTC 1 cut(s) 22
StyD4I CCNGG 1 cut(s) 611
StyI CCWWGG 1 cut(s) 723
TaaI ACNGT 3 cut(s) 245, 431, 673
TaiI ACGT 1 cut(s) 564
TaqI TCGA 2 cut(s) 633, 651
TaqII GACCGA 1 cut(s) 186
TasI AATT 6 cut(s) 177, 312, 439, 517, 681, 710
TatI WGTACW 3 cut(s) 159, 435, 748
TfiI GAWTC 2 cut(s) 322, 476
Tru1I TTAA 2 cut(s) 729, 795
Tru9I TTAA 2 cut(s) 729, 795
TscAI CASTG 6 cut(s) 77, 250, 324, 457, 678, 747
TseFI GTSAC 2 cut(s) 389, 673
TseI GCWGC 4 cut(s) 182, 185, 335, 487
Tsp45I GTSAC 2 cut(s) 389, 673
TspDTI ATGAA 3 cut(s) 17, 468, 565
TspGWI ACGGA 1 cut(s) 694
TspRI CASTG 6 cut(s) 77, 250, 324, 457, 678, 747
VpaK11BI GGWCC 2 cut(s) 169, 458
XapI RAATTY 2 cut(s) 517, 710
XceI RCATGY 1 cut(s) 202
XcmI CCANNNNNNNNNTGG 1 cut(s) 730
XspI CTAG 5 cut(s) 12, 23, 86, 345, 644
ZrmI AGTACT 1 cut(s) 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.