Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009356

Physical Location & Seq

Genomic Coordinates Forward (+)

7778017 .. 7780907

Gene Structure 2891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G23120.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGCGTCTCTGCAACTCTGCGACGGTTATCTTCTCTTCAAGCCCTCTGTTTCTCCTCGATTCCTCTCTCAACGCATTTCTCATCGCCTAATCCCTAAAGCCTCATCTTCTCCTCCTCCATCTCCATCACCATCATCGTCCTCTTCATCCTTATCTTTCAGTCGGCGGGAGCTTCTGTACCAATCGGCAGCTGTATCACTCTCGCTTTCTTCCATTGTTGGACCAGCGAGAGCTGATGAACAGTTATCCGAATGGGAAAGAGTGTTTCTCCCAATCGATCCCGGTGTTGTTCTTCTCGACATTGCTTTCGTCCCCGACGAACCTAGCCGAGGGTTTTTACTTGGAACGAGACAGACTTTGTTAGAGACTAAAGATGGTGGAAGCACTTGGAATCCACGTTCGATTCCTTCAGCTGAAGAAGAAGATTTCAATTATAGATTCAATTCGATTAGCTTTAAAGGCAAAGAAGGATGGATTATTGGCAAACCTGCGATTTTATTGTACACTGCTGATGCTGGAGAGAATTGGGATAGGATTCCTCTAAGTTCTCAGCTTCCTGGAGATATGGTGTTTATAAAAGCGACAGAAGATAAGAGTGCAGAGATGGTTACTGATGAAGGTGCTATTTATGTTACTTCAAACAGGGGATATAACTGGAAAGCTGCTATTCAGGAAACTGTTTCAGCTACCTTGAACAGAACAGTATCCAGTGGAATCAGTGGTGCTAGTTACTACACGGGAACTTTCAGTGCTGTTAATCGTTCACCTGATGGAAGATATGTCGCTGTTTCGAGCCGTGGTAACTTCTTTCTGACATGGGAGCCTGGGCAGCCTTACTGGCAACCACACAATAGAGCTGTTGCTAGAAGAATTCAGAACATGGGATGGAGAGCTGATGGTGGTCTTTGGCTTCTTGTTCGTGGTGGAGGACTTTATCTTAGCAAAGGTACTGGGATTACAGAGGAGTTTGAAGAAGTTCCAGTACAAAGCCGTGGCTTTGGCATTCTAGATGTTGGATATCGCTCAGAGGAAGAAGCATGGGCAGCAGGAGGCAGTGGCATACTACTGAGAACAAGAAATGGAGGCAAATCATGGAACCGTGACAAAGCTGCTGATAATATCGCAGCTAACCTATACGCAGTCAAATTTGTGGATGACAAGAAAGGATTTGTGCTTGGCAACGATGGAGTCTTGCTCCGATATGTTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009533 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016043 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0055035 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PSII_BNR

Protein Analysis

403

Amino Acids

44.1

Weight (kDa)

6.79

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSII_BNR	PF14870	104 - 425	3.4e-121	Photosynthesis system II assembly factor YCF48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23120 AT5G23120
fragaria_vesca	FvH4_4g36890 FvH4_4g36890
malus_domestica	MD00G1043400.v1.1 MD13G1005900.v1.1 MD15G1106700.v1.1 MD16G1002000.v1.1
prunus_persica	Prupe.1G347100_v2.0.a1
pyrus_communis	pycom13g00490 pycom16g00370
rosa_chinensis	RchiOBHm_Chr4g0446671
rosa_laevigata	RLG00000005641
rosa_multiflora	Rmu_sc0001753.1_g000042 Rmu_sc0001753.1_g000043
rosa_roxburghii	Rroxscaffold_5G00387030
rosa_rugosa	Rorug04G0373600
rosa_samantha	Rh4AG435000 Rh4BG444000 Rh4CG461300 Rh4DG442800
rosa_wichuraiana	Rw4G037190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	575
Acc36I	ACCTGC	1 cut(s)	496
AciI	CCGC	1 cut(s)	166
AclWI	GGATC	1 cut(s)	272
AcsI	RAATTY	2 cut(s)	870, 1145
AcuI	CTGAAG	2 cut(s)	393, 435
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	4 cut(s)	179, 503, 949, 984
AfiI	CCNNNNNNNGG	1 cut(s)	329
AgsI	TTSAA	6 cut(s)	40, 430, 442, 639, 694, 971
AjnI	CCWGG	2 cut(s)	556, 823
AloI	GAACNNNNNNTCC	2 cut(s)	382, 414
Alw26I	GTCTC	3 cut(s)	12, 343, 359
AlwI	GGATC	1 cut(s)	272
ApeKI	GCWGC	6 cut(s)	188, 662, 829, 1043, 1109, 1124
ApoI	RAATTY	2 cut(s)	870, 1145
ArsI	GACNNNNNNTTYG	2 cut(s)	290, 322
Asp700I	GAANNNNTTC	1 cut(s)	975
AspS9I	GGNCC	1 cut(s)	221
AsuC2I	CCSGG	1 cut(s)	282
AsuHPI	GGTGA	2 cut(s)	120, 756
AvaII	GGWCC	1 cut(s)	221
BarI	GAAGNNNNNNTAC	2 cut(s)	966, 998
BbvI	GCAGC	6 cut(s)	200, 649, 841, 1055, 1096, 1136
BceAI	ACGGC	2 cut(s)	780, 975
BciT130I	CCWGG	2 cut(s)	558, 825
BciVI	GTATCC	1 cut(s)	715
BcnI	CCSGG	1 cut(s)	282
BcoDI	GTCTC	3 cut(s)	12, 343, 359
BfaI	CTAG	4 cut(s)	324, 726, 864, 1007
BfuAI	ACCTGC	1 cut(s)	496
BfuI	GTATCC	1 cut(s)	715
BglI	GCCNNNNNGGC	1 cut(s)	838
BisI	GCNGC	6 cut(s)	189, 663, 830, 1044, 1110, 1125
BlsI	GCNGC	6 cut(s)	190, 664, 831, 1045, 1111, 1126
Bme1390I	CCNGG	3 cut(s)	282, 558, 825
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	2 cut(s)	822, 1097
BmrFI	CCNGG	3 cut(s)	282, 558, 825
BmrI	ACTGGG	1 cut(s)	960
BmsI	GCATC	1 cut(s)	502
BmuI	ACTGGG	1 cut(s)	960
BplI	GAGNNNNNCTC	4 cut(s)	252, 284, 1179, 1211
BpmI	CTGGAG	2 cut(s)	537, 579
BpuMI	CCSGG	1 cut(s)	282
Bsa29I	ATCGAT	1 cut(s)	276
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	4 cut(s)	328, 796, 824, 991
BsaXI	ACNNNNNCTCC	4 cut(s)	161, 191, 552, 582
Bsc4I	CCNNNNNNNGG	1 cut(s)	329
Bse1I	ACTGG	5 cut(s)	659, 708, 842, 955, 980
Bse3DI	GCAATG	1 cut(s)	300
BseBI	CCWGG	2 cut(s)	558, 825
BseCI	ATCGAT	1 cut(s)	276
BseDI	CCNNGG	4 cut(s)	328, 796, 824, 991
BseGI	GGATG	4 cut(s)	146, 476, 890, 1159
BseLI	CCNNNNNNNGG	1 cut(s)	329
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	3 cut(s)	563, 1038, 1058
BseNI	ACTGG	5 cut(s)	659, 708, 842, 955, 980
BseRI	GAGGAG	4 cut(s)	45, 102, 105, 977
BseXI	GCAGC	6 cut(s)	200, 649, 841, 1055, 1096, 1136
BsgI	GTGCAG	1 cut(s)	618
BshVI	ATCGAT	1 cut(s)	276
BsiSI	CCGG	1 cut(s)	282
BslFI	GGGAC	1 cut(s)	296
BslI	CCNNNNNNNGG	1 cut(s)	329
BsmAI	GTCTC	3 cut(s)	12, 343, 359
BsmBI	CGTCTC	1 cut(s)	12
BsmFI	GGGAC	1 cut(s)	296
BsmI	GAATGC	1 cut(s)	1002
Bsp1407I	TGTACA	1 cut(s)	501
Bsp143I	GATC	1 cut(s)	277
BspACI	CCGC	1 cut(s)	166
BspCNI	CTCAG	3 cut(s)	562, 1037, 1059
BspDI	ATCGAT	1 cut(s)	276
BspLI	GGNNCC	2 cut(s)	822, 1097
BspMI	ACCTGC	1 cut(s)	496
BspPI	GGATC	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	300
BsrGI	TGTACA	1 cut(s)	501
BsrI	ACTGG	5 cut(s)	659, 708, 842, 955, 980
BssECI	CCNNGG	4 cut(s)	328, 796, 824, 991
BssMI	GATC	1 cut(s)	277
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	2 cut(s)	558, 825
Bst4CI	ACNGT	5 cut(s)	26, 243, 679, 703, 1100
Bst6I	CTCTTC	2 cut(s)	41, 148
BstACI	GRCGYC	1 cut(s)	5
BstAUI	TGTACA	1 cut(s)	501
BstDEI	CTNAG	5 cut(s)	542, 549, 938, 1024, 1067
BstDSI	CCRYGG	2 cut(s)	796, 991
BstENI	CCTNNNNNAGG	1 cut(s)	327
BstF5I	GGATG	4 cut(s)	146, 476, 890, 1159
BstKTI	GATC	1 cut(s)	280
BstMAI	GTCTC	3 cut(s)	12, 343, 359
BstMBI	GATC	1 cut(s)	277
BstMWI	GCNNNNNNNGC	4 cut(s)	459, 829, 838, 1043
BstNI	CCWGG	2 cut(s)	558, 825
BstSCI	CCNGG	3 cut(s)	280, 556, 823
BstV1I	GCAGC	6 cut(s)	200, 649, 841, 1055, 1096, 1136
Bsu15I	ATCGAT	1 cut(s)	276
BsuI	GTATCC	1 cut(s)	715
BsuTUI	ATCGAT	1 cut(s)	276
BtgI	CCRYGG	2 cut(s)	796, 991
BtgZI	GCGATG	1 cut(s)	68
BtsCI	GGATG	4 cut(s)	146, 476, 890, 1159
BtsI	GCAGTG	2 cut(s)	504, 1060
BtsIMutI	CAGTG	5 cut(s)	504, 715, 724, 754, 1060
BveI	ACCTGC	1 cut(s)	496
Cfr13I	GGNCC	1 cut(s)	221
ClaI	ATCGAT	1 cut(s)	276
Csp6I	GTAC	4 cut(s)	178, 502, 948, 983
CviAII	CATG	4 cut(s)	816, 880, 1038, 1092
CviQI	GTAC	4 cut(s)	178, 502, 948, 983
DdeI	CTNAG	5 cut(s)	542, 549, 938, 1024, 1067
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
DraI	TTTAAA	1 cut(s)	457
Eam1104I	CTCTTC	2 cut(s)	41, 148
EarI	CTCTTC	2 cut(s)	41, 148
Eco32I	GATATC	1 cut(s)	1019
Eco47I	GGWCC	1 cut(s)	221
Eco57I	CTGAAG	2 cut(s)	393, 435
EcoNI	CCTNNNNNAGG	1 cut(s)	327
EcoRI	GAATTC	1 cut(s)	870
EcoRII	CCWGG	2 cut(s)	556, 823
EcoRV	GATATC	1 cut(s)	1019
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	4 cut(s)	819, 883, 1041, 1095
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	4 cut(s)	815, 879, 1037, 1091
FauI	CCCGC	1 cut(s)	159
Fnu4HI	GCNGC	6 cut(s)	189, 663, 830, 1044, 1110, 1125
FokI	GGATG	4 cut(s)	133, 483, 897, 1166
Fsp4HI	GCNGC	6 cut(s)	189, 663, 830, 1044, 1110, 1125
FspBI	CTAG	4 cut(s)	324, 726, 864, 1007
GluI	GCNGC	6 cut(s)	189, 663, 830, 1044, 1110, 1125
GsuI	CTGGAG	2 cut(s)	537, 579
HapII	CCGG	1 cut(s)	282
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	819, 883, 1041, 1095
HinfI	GANTC	7 cut(s)	60, 391, 403, 438, 535, 714, 1188
HpaII	CCGG	1 cut(s)	282
HphI	GGTGA	2 cut(s)	120, 756
Hpy166II	GTNNAC	2 cut(s)	504, 764
Hpy188I	TCNGA	5 cut(s)	250, 813, 876, 1027, 1199
Hpy188III	TCNNGA	3 cut(s)	296, 671, 1007
Hpy8I	GTNNAC	2 cut(s)	504, 764
Hpy99I	CGWCG	2 cut(s)	26, 320
HpyAV	CCTTC	3 cut(s)	417, 461, 611
HpyCH4III	ACNGT	5 cut(s)	26, 243, 679, 703, 1100
HpyCH4IV	ACGT	1 cut(s)	397
HpyCH4V	TGCA	2 cut(s)	13, 599
HpyF10VI	GCNNNNNNNGC	4 cut(s)	459, 829, 838, 1043
HpyF3I	CTNAG	5 cut(s)	542, 549, 938, 1024, 1067
HpySE526I	ACGT	1 cut(s)	397
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	819, 883, 1041, 1095
Kzo9I	GATC	1 cut(s)	277
LmnI	GCTCC	3 cut(s)	169, 820, 1200
Lsp1109I	GCAGC	6 cut(s)	200, 649, 841, 1055, 1096, 1136
LweI	GCATC	1 cut(s)	502
MaeI	CTAG	4 cut(s)	324, 726, 864, 1007
MaeII	ACGT	1 cut(s)	397
MaeIII	GTNAC	5 cut(s)	607, 631, 728, 800, 1100
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MluCI	AATT	5 cut(s)	430, 442, 523, 870, 1145
MlyI	GAGTC	1 cut(s)	1197
MmeI	TCCRAC	2 cut(s)	199, 994
MroXI	GAANNNNTTC	1 cut(s)	975
MseI	TTAA	2 cut(s)	456, 756
MspA1I	CMGCKG	2 cut(s)	191, 413
MspI	CCGG	1 cut(s)	282
MspR9I	CCNGG	3 cut(s)	282, 558, 825
Mva1269I	GAATGC	1 cut(s)	1002
MvaI	CCWGG	2 cut(s)	558, 825
MwoI	GCNNNNNNNGC	4 cut(s)	459, 829, 838, 1043
NciI	CCSGG	1 cut(s)	282
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	4 cut(s)	819, 883, 1041, 1095
NlaIV	GGNNCC	2 cut(s)	822, 1097
NmeAIII	GCCGAG	1 cut(s)	353
NmuCI	GTSAC	1 cut(s)	1100
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PctI	GAATGC	1 cut(s)	1002
PdmI	GAANNNNTTC	1 cut(s)	975
PfeI	GAWTC	6 cut(s)	60, 391, 403, 438, 535, 714
PfoI	TCCNGGA	1 cut(s)	556
PkrI	GCNGC	6 cut(s)	190, 664, 831, 1045, 1111, 1126
PleI	GAGTC	1 cut(s)	1196
PpsI	GAGTC	1 cut(s)	1196
PsiI	TTATAA	1 cut(s)	575
Psp6I	CCWGG	2 cut(s)	556, 823
PspGI	CCWGG	2 cut(s)	556, 823
PspN4I	GGNNCC	2 cut(s)	822, 1097
PspPI	GGNCC	1 cut(s)	221
PvuII	CAGCTG	2 cut(s)	191, 413
RsaI	GTAC	4 cut(s)	179, 503, 949, 984
RsaNI	GTAC	4 cut(s)	178, 502, 948, 983
SaqAI	TTAA	2 cut(s)	456, 756
SatI	GCNGC	6 cut(s)	189, 663, 830, 1044, 1110, 1125
Sau3AI	GATC	1 cut(s)	277
Sau96I	GGNCC	1 cut(s)	221
SchI	GAGTC	1 cut(s)	1197
ScrFI	CCNGG	3 cut(s)	282, 558, 825
SfaNI	GCATC	1 cut(s)	502
SinI	GGWCC	1 cut(s)	221
Sse9I	AATT	5 cut(s)	430, 442, 523, 870, 1145
SsiI	CCGC	1 cut(s)	166
SspMI	CTAG	4 cut(s)	324, 726, 864, 1007
StyD4I	CCNGG	3 cut(s)	280, 556, 823
TaaI	ACNGT	5 cut(s)	26, 243, 679, 703, 1100
TaiI	ACGT	1 cut(s)	400
TaqI	TCGA	6 cut(s)	58, 276, 297, 401, 446, 791
TasI	AATT	5 cut(s)	430, 442, 523, 870, 1145
TatI	WGTACW	2 cut(s)	501, 982
TfiI	GAWTC	6 cut(s)	60, 391, 403, 438, 535, 714
Tru1I	TTAA	2 cut(s)	456, 756
Tru9I	TTAA	2 cut(s)	456, 756
TscAI	CASTG	5 cut(s)	511, 715, 724, 754, 1060
TseFI	GTSAC	1 cut(s)	1100
TseI	GCWGC	6 cut(s)	188, 662, 829, 1043, 1109, 1124
Tsp45I	GTSAC	1 cut(s)	1100
TspDTI	ATGAA	3 cut(s)	135, 252, 630
TspRI	CASTG	5 cut(s)	511, 715, 724, 754, 1060
VpaK11BI	GGWCC	1 cut(s)	221
XagI	CCTNNNNNAGG	1 cut(s)	327
XapI	RAATTY	2 cut(s)	870, 1145
XbaI	TCTAGA	1 cut(s)	1006
XmnI	GAANNNNTTC	1 cut(s)	975
XspI	CTAG	4 cut(s)	324, 726, 864, 1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.