Rmu_sc0001753.1_g000043

Photosystem II stability assembly factor HCF136

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001753.1
Physical Location & Seq
Reverse (-)
201682 .. 205609
3928 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001753.1_g000043.1.cds

Sequence Viewer

Length: 1458 bp
atggcgactcggcaactcctcactacagatttctccaaaccaatgattctcctcaaaccctctctcttcgtctccactcctccacgtcattgccccacttctctccctcgcttcattccccgagcctcttcctcttctccttctccgctcagtcgccgccacttcgtctcggagacggcggcgctgtctctcgccctaaccgtgccgttgctgggttcccctcaaccggccaagtccgaagagcccgccctctccgagtgggagaaagtctccctccctatcgaccccggcgtcgtccttctcgacatcgctttcgtccccgacgaccctaagcacggatttctgttgggaacaaggcagacacttttggagaccaaggacggtggacaaagctgggcgccgcggtcaattccgtctgctgaagatgaagattttaactacaggttcaatgccataagcttcaaagggaaggagggctggattgtcggaaagcctgcaattctcttgcacacttctgatgctggcgacagctgggaacggataccgctaagctctcagcttccgggagatatggtatatataaaggcaactgatgagaagagcgcagagatggtgactgacgaaggtgcgatttatgtcacctccaataggggatacaattggagggctgctgttcaggagactgtctctgctactcttaatagaacagtctctagtggcattagcggtgcaagttactacacaggaacttttaatgccgtcaatcgctcgccaaatggaagctatgttgctgtctcaagtcgtggtaacttcttccttacttgggagcctggtcaggtcagttttcacctctcggaagctatatggcctcttgttcttcatcttaactgtgttccatctccgctcagtcgccgccacttcgtctcggagacggcggcgctgtctctcgccctaaccgtgccgttgctgggttcccctcaaccggccaagtccgaagagcccgccctctccgagtgggagaaagtctccctccctatcgaccccggcgtcgtccttctcgacatcgctttcgtccccgacgaccctaagcacggggtgaatgccttacccagcattctaagtgatgattcagggacttcacttttaagttttgctccccatatgtgtcatgactcaacacttcaccaaataacagaggagtttgaagaagttccagtccaaagccggggttttggcattcttgatgttgggtaccgatcaaagataacagaggagtttgaagaagttccagtccaaagccggggttttggcattcttgatgttgggtaccgatcaaaggatgaggcttgggcagcaggtggaagtgggattttattgcgaactaccaatggtggcaagacatgggtccgtgacaaagcagccgacaatattgctgcaaatctgtactctgtaaagtaa

Protein Analysis

485

Amino Acids

52.65

Weight (kDa)

5.38

Isoelectric Point (pI)

46.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1346
AasI GACNNNNNNGTC 2 cut(s) 290, 1046
Acc36I ACCTGC 1 cut(s) 1346
Acc65I GGTACC 2 cut(s) 1251, 1326
AccB1I GGYRCC 3 cut(s) 397, 1251, 1326
AccBSI CCGCTC 2 cut(s) 148, 904
AccII CGCG 1 cut(s) 403
AcoI YGGCCR 2 cut(s) 228, 984
AcuI CTGAAG 1 cut(s) 441
AcyI GRCGYC 3 cut(s) 291, 398, 1047
AdeI CACNNNGTG 1 cut(s) 1096
AfaI GTAC 3 cut(s) 1253, 1328, 1445
AgsI TTSAA 4 cut(s) 448, 463, 1205, 1280
AjiI CACGTC 1 cut(s) 86
AjnI CCWGG 1 cut(s) 829
AluBI AGCT 7 cut(s) 393, 459, 531, 552, 559, 783, 860
AluI AGCT 7 cut(s) 393, 459, 531, 552, 559, 783, 860
Ama87I CYCGRG 1 cut(s) 120
AoxI GGCC 3 cut(s) 228, 866, 984
ApeKI GCWGC 4 cut(s) 668, 1352, 1418, 1433
ArsI GACNNNNNNTTYG 4 cut(s) 296, 328, 1052, 1084
Asp700I GAANNNNTTC 2 cut(s) 1209, 1284
Asp718I GGTACC 2 cut(s) 1251, 1326
AspLEI GCGC 4 cut(s) 184, 400, 605, 940
AspS9I GGNCC 1 cut(s) 1405
AsuC2I CCSGG 5 cut(s) 288, 564, 1044, 1226, 1301
AsuHPI GGTGA 5 cut(s) 625, 631, 839, 1108, 1175
AvaI CYCGRG 1 cut(s) 120
AvaII GGWCC 1 cut(s) 1405
BanI GGYRCC 3 cut(s) 397, 1251, 1326
BanII GRGCYC 2 cut(s) 246, 1002
BbvI GCAGC 4 cut(s) 655, 1364, 1420, 1430
BccI CCATC 2 cut(s) 604, 904
BceAI ACGGC 5 cut(s) 190, 192, 743, 946, 948
BcgI CGANNNNNNTGC 2 cut(s) 1412, 1446
BciT130I CCWGG 1 cut(s) 831
BciVI GTATCC 2 cut(s) 534, 647
BcnI CCSGG 5 cut(s) 288, 564, 1044, 1226, 1301
BfaI CTAG 1 cut(s) 714
BfmI CTRYAG 2 cut(s) 24, 439
BfoI RGCGCY 3 cut(s) 185, 401, 941
BfuAI ACCTGC 1 cut(s) 1346
BfuI GTATCC 2 cut(s) 534, 647
BisI GCNGC 9 cut(s) 157, 180, 401, 669, 913, 936, 1353, 1419, 1434
BlpI GCTNAGC 1 cut(s) 548
BlsI GCNGC 9 cut(s) 158, 181, 402, 670, 914, 937, 1354, 1420, 1435
Bme1390I CCNGG 6 cut(s) 288, 564, 831, 1044, 1226, 1301
Bme18I GGWCC 1 cut(s) 1405
BmeT110I CYCGRG 1 cut(s) 120
BmgBI CACGTC 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 1405
BmiI GGNNCC 7 cut(s) 217, 399, 828, 973, 1253, 1328, 1406
BmrFI CCNGG 6 cut(s) 288, 564, 831, 1044, 1226, 1301
BmsI GCATC 1 cut(s) 508
BoxI GACNNNNGTC 1 cut(s) 1403
BplI GAGNNNNNCTC 6 cut(s) 254, 286, 671, 703, 1010, 1042
Bpu10I CCTNAGC 2 cut(s) 330, 1086
Bpu1102I GCTNAGC 1 cut(s) 548
BpuEI CTTGAG 1 cut(s) 781
BpuMI CCSGG 5 cut(s) 288, 564, 1044, 1226, 1301
BsaHI GRCGYC 3 cut(s) 291, 398, 1047
BsaI GGTCTC 1 cut(s) 365
BsaJI CCNNGG 6 cut(s) 286, 375, 401, 1042, 1225, 1300
BsaXI ACNNNNNCTCC 2 cut(s) 558, 588
Bse118I RCCGGY 2 cut(s) 226, 982
Bse1I ACTGG 2 cut(s) 1214, 1289
Bse3DI GCAATG 1 cut(s) 88
BseBI CCWGG 1 cut(s) 831
BseDI CCNNGG 6 cut(s) 286, 375, 401, 1042, 1225, 1300
BseGI GGATG 1 cut(s) 1345
BseMI GCAATG 1 cut(s) 88
BseMII CTCAG 3 cut(s) 163, 569, 919
BseNI ACTGG 2 cut(s) 1214, 1289
BseRI GAGGAG 5 cut(s) 8, 41, 69, 1211, 1286
BseXI GCAGC 4 cut(s) 655, 1364, 1420, 1430
BseYI CCCAGC 5 cut(s) 211, 393, 531, 967, 1109
Bsh1236I CGCG 1 cut(s) 403
BshFI GGCC 3 cut(s) 230, 868, 986
BshNI GGYRCC 3 cut(s) 397, 1251, 1326
BsiHKCI CYCGRG 1 cut(s) 120
BsiSI CCGG 7 cut(s) 227, 288, 563, 983, 1044, 1225, 1300
BslFI GGGAC 3 cut(s) 302, 1058, 1147
BsmBI CGTCTC 5 cut(s) 76, 167, 172, 923, 928
BsmFI GGGAC 3 cut(s) 302, 1058, 1147
BsmI GAATGC 4 cut(s) 1105, 1113, 1236, 1311
BsnI GGCC 3 cut(s) 230, 868, 986
Bso31I GGTCTC 1 cut(s) 365
BsoBI CYCGRG 1 cut(s) 120
Bsp1286I GDGCHC 2 cut(s) 246, 1002
Bsp143I GATC 2 cut(s) 1256, 1331
Bsp1720I GCTNAGC 1 cut(s) 548
BspANI GGCC 3 cut(s) 230, 868, 986
BspCNI CTCAG 3 cut(s) 162, 568, 918
BspFNI CGCG 1 cut(s) 403
BspHI TCATGA 1 cut(s) 1168
BspLI GGNNCC 7 cut(s) 217, 399, 828, 973, 1253, 1328, 1406
BspMI ACCTGC 1 cut(s) 1346
BspQI GCTCTTC 3 cut(s) 234, 593, 990
BspT107I GGYRCC 3 cut(s) 397, 1251, 1326
BspTNI GGTCTC 1 cut(s) 365
BsrBI CCGCTC 2 cut(s) 148, 904
BsrDI GCAATG 1 cut(s) 88
BsrFI RCCGGY 2 cut(s) 226, 982
BsrI ACTGG 2 cut(s) 1214, 1289
BssAI RCCGGY 2 cut(s) 226, 982
BssECI CCNNGG 6 cut(s) 286, 375, 401, 1042, 1225, 1300
BssMI GATC 2 cut(s) 1256, 1331
BssNI GRCGYC 3 cut(s) 291, 398, 1047
BssT1I CCWWGG 1 cut(s) 375
Bst2UI CCWGG 1 cut(s) 831
Bst4CI ACNGT 6 cut(s) 202, 383, 685, 709, 890, 958
Bst6I CTCTTC 6 cut(s) 71, 133, 139, 234, 593, 990
BstACI GRCGYC 3 cut(s) 291, 398, 1047
BstC8I GCNNGC 5 cut(s) 246, 495, 523, 770, 1002
BstDEI CTNAG 7 cut(s) 149, 330, 548, 555, 905, 1086, 1118
BstDSI CCRYGG 1 cut(s) 401
BstENI CCTNNNNNAGG 1 cut(s) 646
BstF5I GGATG 1 cut(s) 1345
BstFNI CGCG 1 cut(s) 403
BstH2I RGCGCY 3 cut(s) 185, 401, 941
BstHHI GCGC 4 cut(s) 184, 400, 605, 940
BstKTI GATC 2 cut(s) 1259, 1334
BstMBI GATC 2 cut(s) 1256, 1331
BstMWI GCNNNNNNNGC 1 cut(s) 1352
BstNI CCWGG 1 cut(s) 831
BstPAI GACNNNNGTC 1 cut(s) 1403
BstSCI CCNGG 6 cut(s) 286, 562, 829, 1042, 1224, 1299
BstSFI CTRYAG 2 cut(s) 24, 439
BstUI CGCG 1 cut(s) 403
BstV1I GCAGC 4 cut(s) 655, 1364, 1420, 1430
BsuI GTATCC 2 cut(s) 534, 647
BsuRI GGCC 3 cut(s) 230, 868, 986
BtgI CCRYGG 1 cut(s) 401
BtgZI GCGATG 2 cut(s) 292, 1048
BtrI CACGTC 1 cut(s) 86
BtsCI GGATG 1 cut(s) 1345
BveI ACCTGC 1 cut(s) 1346
Cac8I GCNNGC 5 cut(s) 246, 495, 523, 770, 1002
CciI TCATGA 1 cut(s) 1168
CfoI GCGC 4 cut(s) 184, 400, 605, 940
Cfr10I RCCGGY 2 cut(s) 226, 982
Cfr13I GGNCC 1 cut(s) 1405
Cfr42I CCGCGG 1 cut(s) 404
CseI GACGC 2 cut(s) 280, 1036
Csp6I GTAC 3 cut(s) 1252, 1327, 1444
CspCI CAANNNNNGTGG 2 cut(s) 364, 399
CviAII CATG 2 cut(s) 1169, 1401
CviQI GTAC 3 cut(s) 1252, 1327, 1444
DdeI CTNAG 7 cut(s) 149, 330, 548, 555, 905, 1086, 1118
DinI GGCGCC 1 cut(s) 399
DpnI GATC 2 cut(s) 1258, 1333
DpnII GATC 2 cut(s) 1256, 1331
DraIII CACNNNGTG 1 cut(s) 1096
DrdI GACNNNNNNGTC 2 cut(s) 290, 1046
DseDI GACNNNNNNGTC 2 cut(s) 290, 1046
EaeI YGGCCR 2 cut(s) 228, 984
Eam1104I CTCTTC 6 cut(s) 71, 133, 139, 234, 593, 990
EarI CTCTTC 6 cut(s) 71, 133, 139, 234, 593, 990
Eco130I CCWWGG 1 cut(s) 375
Eco24I GRGCYC 2 cut(s) 246, 1002
Eco31I GGTCTC 1 cut(s) 365
Eco47I GGWCC 1 cut(s) 1405
Eco57I CTGAAG 1 cut(s) 441
Eco88I CYCGRG 1 cut(s) 120
EcoNI CCTNNNNNAGG 1 cut(s) 646
EcoRII CCWGG 1 cut(s) 829
EcoT14I CCWWGG 1 cut(s) 375
EcoT38I GRGCYC 2 cut(s) 246, 1002
EgeI GGCGCC 1 cut(s) 399
EheI GGCGCC 1 cut(s) 399
ErhI CCWWGG 1 cut(s) 375
Esp3I CGTCTC 5 cut(s) 76, 167, 172, 923, 928
FaeI CATG 2 cut(s) 1172, 1404
FaqI GGGAC 3 cut(s) 302, 1058, 1147
FatI CATG 2 cut(s) 1168, 1400
FauI CCCGC 2 cut(s) 253, 1009
FauNDI CATATG 1 cut(s) 1161
Fnu4HI GCNGC 9 cut(s) 157, 180, 401, 669, 913, 936, 1353, 1419, 1434
FokI GGATG 1 cut(s) 1352
FriOI GRGCYC 2 cut(s) 246, 1002
Fsp4HI GCNGC 9 cut(s) 157, 180, 401, 669, 913, 936, 1353, 1419, 1434
FspBI CTAG 1 cut(s) 714
GlaI GCGC 4 cut(s) 183, 399, 604, 939
GluI GCNGC 9 cut(s) 157, 180, 401, 669, 913, 936, 1353, 1419, 1434
GsaI CCCAGC 5 cut(s) 215, 397, 535, 971, 1113
HaeII RGCGCY 3 cut(s) 185, 401, 941
HaeIII GGCC 3 cut(s) 230, 868, 986
HapII CCGG 7 cut(s) 227, 288, 563, 983, 1044, 1225, 1300
HgaI GACGC 2 cut(s) 280, 1036
HhaI GCGC 4 cut(s) 184, 400, 605, 940
Hin1I GRCGYC 3 cut(s) 291, 398, 1047
Hin1II CATG 2 cut(s) 1172, 1404
Hin6I GCGC 4 cut(s) 182, 398, 603, 938
HinP1I GCGC 4 cut(s) 182, 398, 603, 938
HindIII AAGCTT 1 cut(s) 457
HinfI GANTC 4 cut(s) 7, 46, 1127, 1172
HpaII CCGG 7 cut(s) 227, 288, 563, 983, 1044, 1225, 1300
HphI GGTGA 5 cut(s) 625, 631, 839, 1108, 1175
Hpy166II GTNNAC 1 cut(s) 386
Hpy188I TCNGA 9 cut(s) 172, 238, 256, 488, 517, 856, 928, 994, 1012
Hpy188III TCNNGA 6 cut(s) 302, 677, 1058, 1169, 1241, 1316
Hpy8I GTNNAC 1 cut(s) 386
Hpy99I CGWCG 4 cut(s) 296, 326, 1052, 1082
HpyAV CCTTC 5 cut(s) 150, 308, 463, 617, 1064
HpyCH4III ACNGT 6 cut(s) 202, 383, 685, 709, 890, 958
HpyCH4IV ACGT 1 cut(s) 85
HpyCH4V TGCA 4 cut(s) 497, 508, 731, 1436
HpyF10VI GCNNNNNNNGC 1 cut(s) 1352
HpyF3I CTNAG 7 cut(s) 149, 330, 548, 555, 905, 1086, 1118
HpySE526I ACGT 1 cut(s) 85
Hsp92I GRCGYC 3 cut(s) 291, 398, 1047
Hsp92II CATG 2 cut(s) 1172, 1404
HspAI GCGC 4 cut(s) 182, 398, 603, 938
KasI GGCGCC 1 cut(s) 397
KpnI GGTACC 2 cut(s) 1255, 1330
KspI CCGCGG 1 cut(s) 404
Kzo9I GATC 2 cut(s) 1256, 1331
LguI GCTCTTC 3 cut(s) 234, 593, 990
LmnI GCTCC 2 cut(s) 826, 1159
Lsp1109I GCAGC 4 cut(s) 655, 1364, 1420, 1430
LweI GCATC 1 cut(s) 508
MaeI CTAG 1 cut(s) 714
MaeII ACGT 1 cut(s) 85
MaeIII GTNAC 5 cut(s) 613, 637, 734, 806, 1409
MalI GATC 2 cut(s) 1258, 1333
MbiI CCGCTC 2 cut(s) 148, 904
MboI GATC 2 cut(s) 1256, 1331
MfeI CAATTG 1 cut(s) 658
MhlI GDGCHC 2 cut(s) 246, 1002
MluCI AATT 3 cut(s) 408, 498, 658
Mly113I GGCGCC 1 cut(s) 398
MlyI GAGTC 1 cut(s) 1166
MmeI TCCRAC 1 cut(s) 466
MroXI GAANNNNTTC 2 cut(s) 1209, 1284
MseI TTAA 5 cut(s) 435, 699, 753, 885, 1145
MspA1I CMGCKG 2 cut(s) 403, 531
MspI CCGG 7 cut(s) 227, 288, 563, 983, 1044, 1225, 1300
MspR9I CCNGG 6 cut(s) 288, 564, 831, 1044, 1226, 1301
MunI CAATTG 1 cut(s) 658
Mva1269I GAATGC 4 cut(s) 1105, 1113, 1236, 1311
MvaI CCWGG 1 cut(s) 831
MvnI CGCG 1 cut(s) 403
MwoI GCNNNNNNNGC 1 cut(s) 1352
NarI GGCGCC 1 cut(s) 398
NciI CCSGG 5 cut(s) 288, 564, 1044, 1226, 1301
NdeI CATATG 1 cut(s) 1161
NdeII GATC 2 cut(s) 1256, 1331
NlaIII CATG 2 cut(s) 1172, 1404
NlaIV GGNNCC 7 cut(s) 217, 399, 828, 973, 1253, 1328, 1406
NmuCI GTSAC 3 cut(s) 613, 637, 1409
PagI TCATGA 1 cut(s) 1168
PaqCI CACCTGC 1 cut(s) 1346
PciSI GCTCTTC 3 cut(s) 234, 593, 990
PcsI WCGNNNNNNNCGW 8 cut(s) 198, 288, 300, 321, 954, 1044, 1056, 1077
PctI GAATGC 4 cut(s) 1105, 1113, 1236, 1311
PdmI GAANNNNTTC 2 cut(s) 1209, 1284
PfeI GAWTC 2 cut(s) 46, 1127
PfoI TCCNGGA 1 cut(s) 562
PkrI GCNGC 9 cut(s) 158, 181, 402, 670, 914, 937, 1354, 1420, 1435
PleI GAGTC 1 cut(s) 1166
PluTI GGCGCC 1 cut(s) 401
PpsI GAGTC 1 cut(s) 1166
PshAI GACNNNNGTC 1 cut(s) 1403
Psp6I CCWGG 1 cut(s) 829
PspFI CCCAGC 5 cut(s) 211, 393, 531, 967, 1109
PspGI CCWGG 1 cut(s) 829
PspN4I GGNNCC 7 cut(s) 217, 399, 828, 973, 1253, 1328, 1406
PspPI GGNCC 1 cut(s) 1405
PvuII CAGCTG 1 cut(s) 531
RsaI GTAC 3 cut(s) 1253, 1328, 1445
RsaNI GTAC 3 cut(s) 1252, 1327, 1444
SacII CCGCGG 1 cut(s) 404
SapI GCTCTTC 3 cut(s) 234, 593, 990
SaqAI TTAA 5 cut(s) 435, 699, 753, 885, 1145
SatI GCNGC 9 cut(s) 157, 180, 401, 669, 913, 936, 1353, 1419, 1434
Sau3AI GATC 2 cut(s) 1256, 1331
Sau96I GGNCC 1 cut(s) 1405
SchI GAGTC 1 cut(s) 1166
ScrFI CCNGG 6 cut(s) 288, 564, 831, 1044, 1226, 1301
SduI GDGCHC 2 cut(s) 246, 1002
SfaNI GCATC 1 cut(s) 508
SfcI CTRYAG 2 cut(s) 24, 439
SfoI GGCGCC 1 cut(s) 399
Sfr303I CCGCGG 1 cut(s) 404
SgrBI CCGCGG 1 cut(s) 404
SinI GGWCC 1 cut(s) 1405
SmlI CTYRAG 1 cut(s) 796
SmoI CTYRAG 1 cut(s) 796
Sse9I AATT 3 cut(s) 408, 498, 658
SspDI GGCGCC 1 cut(s) 397
SspI AATATT 1 cut(s) 1429
SspMI CTAG 1 cut(s) 714
StyD4I CCNGG 6 cut(s) 286, 562, 829, 1042, 1224, 1299
StyI CCWWGG 1 cut(s) 375
TaaI ACNGT 6 cut(s) 202, 383, 685, 709, 890, 958
TaiI ACGT 1 cut(s) 88
TaqI TCGA 4 cut(s) 282, 303, 1038, 1059
TasI AATT 3 cut(s) 408, 498, 658
TatI WGTACW 1 cut(s) 1443
TauI GCSGC 5 cut(s) 159, 182, 403, 915, 938
TfiI GAWTC 2 cut(s) 46, 1127
Tru1I TTAA 5 cut(s) 435, 699, 753, 885, 1145
Tru9I TTAA 5 cut(s) 435, 699, 753, 885, 1145
TseFI GTSAC 3 cut(s) 613, 637, 1409
TseI GCWGC 4 cut(s) 668, 1352, 1418, 1433
Tsp45I GTSAC 3 cut(s) 613, 637, 1409
TspDTI ATGAA 3 cut(s) 103, 441, 869
TspGWI ACGGA 4 cut(s) 351, 402, 553, 1397
VpaK11BI GGWCC 1 cut(s) 1405
XagI CCTNNNNNAGG 1 cut(s) 646
XmnI GAANNNNTTC 2 cut(s) 1209, 1284
XspI CTAG 1 cut(s) 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.