Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0009356

Physical Location & Seq

Genomic Coordinates Reverse (-)

302511 .. 304043

Gene Structure 1533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g00490.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGTGTATATAAAGGCAACTGGTGAGAAGAGTGCAGAGATGGTGACTGATGAAGGTGCGATTTATGTGACATCAAATAGAGGCTACAACTGGAGGGCTGCTGTTCAGGAGACTGTTTCCGCTACTCTTAATAGAACAGTTTCTAGTGGAATTAGTGGTGCAAGTTACTACACTGGAACTTTTAATTCAGTGAATCGCTCACCCGATGGAAAATATGTTGCTGTCTCAAGCCGTGGTAACTTCTACCTCACTTGGGAGCCTGGCCAGCCATACCGGCAGCCACATAACAGAACAGTTGCAAGAAGAATTCAAAACATGGGGTGGAGAGCTGATGGTGGCCTTTGGCTCCTTGTTCGCGGAGGGGGACTTTATCTAAGCAAAGGTACCGGGTTAACTGAGGATTTTGAAGAAGTTCCAGTCCAAAGCCGGGGGTTTGGCATTCTTGATGTTGGGTACCGATCAAAGGATGAGGCTTGGGCAGCAGGGGGAAGTGGGATTTTACTGCAAACTACCAATGGTGGTAAGACATGGACCCGTGACAAAGCAGCGGATAATATTGCAGCCAATCTATACTCCGTGAAGTTTATTGATGACAATAAAGGATTTGTGCTGGGGAATGACGGGGTCTTGCTTCGGTATCTTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009533 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016043 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0055035 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PSII_BNR

Protein Analysis

216

Amino Acids

23.44

Weight (kDa)

9.22

Isoelectric Point (pI)

29.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23120 AT5G23120
fragaria_vesca	FvH4_4g36890 FvH4_4g36890
malus_domestica	MD00G1043400.v1.1 MD13G1005900.v1.1 MD15G1106700.v1.1 MD16G1002000.v1.1
prunus_persica	Prupe.1G347100_v2.0.a1
pyrus_communis	pycom13g00490 pycom16g00370
rosa_chinensis	RchiOBHm_Chr4g0446671
rosa_laevigata	RLG00000005641
rosa_multiflora	Rmu_sc0001753.1_g000042 Rmu_sc0001753.1_g000043
rosa_roxburghii	Rroxscaffold_5G00387030
rosa_rugosa	Rorug04G0373600
rosa_samantha	Rh4AG435000 Rh4BG444000 Rh4CG461300 Rh4DG442800
rosa_wichuraiana	Rw4G037190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	383, 453
AccB1I	GGYRCC	2 cut(s)	383, 453
AccII	CGCG	1 cut(s)	357
AciI	CCGC	3 cut(s)	120, 357, 548
AcoI	YGGCCR	1 cut(s)	262
AcsI	RAATTY	1 cut(s)	306
AfaI	GTAC	2 cut(s)	385, 455
AfiI	CCNNNNNNNGG	3 cut(s)	253, 427, 463
AgsI	TTSAA	2 cut(s)	311, 407
AjnI	CCWGG	1 cut(s)	259
AluBI	AGCT	1 cut(s)	329
AluI	AGCT	1 cut(s)	329
Alw26I	GTCTC	2 cut(s)	104, 229
AoxI	GGCC	2 cut(s)	262, 337
ApeKI	GCWGC	5 cut(s)	98, 277, 479, 545, 560
ApoI	RAATTY	1 cut(s)	306
Asp700I	GAANNNNTTC	2 cut(s)	139, 411
Asp718I	GGTACC	2 cut(s)	383, 453
AspS9I	GGNCC	1 cut(s)	531
AsuC2I	CCSGG	2 cut(s)	388, 428
AsuHPI	GGTGA	3 cut(s)	35, 55, 192
AvaII	GGWCC	1 cut(s)	531
BalI	TGGCCA	1 cut(s)	264
BanI	GGYRCC	2 cut(s)	383, 453
BbvI	GCAGC	5 cut(s)	85, 289, 491, 557, 572
BccI	CCATC	3 cut(s)	34, 200, 326
BceAI	ACGGC	1 cut(s)	216
BciT130I	CCWGG	1 cut(s)	261
BcnI	CCSGG	2 cut(s)	388, 428
BcoDI	GTCTC	2 cut(s)	104, 229
BfaI	CTAG	1 cut(s)	144
BglI	GCCNNNNNGGC	1 cut(s)	274
BisI	GCNGC	5 cut(s)	99, 278, 480, 546, 561
BlsI	GCNGC	5 cut(s)	100, 279, 481, 547, 562
Bme1390I	CCNGG	3 cut(s)	261, 388, 428
Bme18I	GGWCC	1 cut(s)	531
BmgT120I	GGNCC	1 cut(s)	531
BmiI	GGNNCC	5 cut(s)	258, 347, 385, 455, 533
BmrFI	CCNGG	3 cut(s)	261, 388, 428
BpmI	CTGGAG	1 cut(s)	112
BpuEI	CTTGAG	1 cut(s)	211
BpuMI	CCSGG	2 cut(s)	388, 428
BsaJI	CCNNGG	2 cut(s)	232, 427
Bsc4I	CCNNNNNNNGG	3 cut(s)	253, 427, 463
Bse118I	RCCGGY	1 cut(s)	273
Bse1I	ACTGG	4 cut(s)	25, 95, 178, 416
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	2 cut(s)	232, 427
BseGI	GGATG	1 cut(s)	472
BseLI	CCNNNNNNNGG	3 cut(s)	253, 427, 463
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	4 cut(s)	25, 95, 178, 416
BseXI	GCAGC	5 cut(s)	85, 289, 491, 557, 572
BseYI	CCCAGC	1 cut(s)	610
BsgI	GTGCAG	1 cut(s)	54
Bsh1236I	CGCG	1 cut(s)	357
BshFI	GGCC	2 cut(s)	264, 339
BshNI	GGYRCC	2 cut(s)	383, 453
BsiSI	CCGG	3 cut(s)	274, 387, 427
BslFI	GGGAC	1 cut(s)	378
BslI	CCNNNNNNNGG	3 cut(s)	253, 427, 463
BsmAI	GTCTC	2 cut(s)	104, 229
BsmFI	GGGAC	1 cut(s)	378
BsmI	GAATGC	1 cut(s)	438
BsnI	GGCC	2 cut(s)	264, 339
Bsp143I	GATC	1 cut(s)	458
BspACI	CCGC	3 cut(s)	120, 357, 548
BspANI	GGCC	2 cut(s)	264, 339
BspCNI	CTCAG	1 cut(s)	388
BspFNI	CGCG	1 cut(s)	357
BspLI	GGNNCC	5 cut(s)	258, 347, 385, 455, 533
BspT107I	GGYRCC	2 cut(s)	383, 453
BsrFI	RCCGGY	1 cut(s)	273
BsrI	ACTGG	4 cut(s)	25, 95, 178, 416
BssAI	RCCGGY	1 cut(s)	273
BssECI	CCNNGG	2 cut(s)	232, 427
BssMI	GATC	1 cut(s)	458
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	3 cut(s)	115, 139, 295
Bst6I	CTCTTC	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	266
BstDEI	CTNAG	2 cut(s)	374, 396
BstDSI	CCRYGG	1 cut(s)	232
BstF5I	GGATG	1 cut(s)	472
BstFNI	CGCG	1 cut(s)	357
BstKTI	GATC	1 cut(s)	461
BstMAI	GTCTC	2 cut(s)	104, 229
BstMBI	GATC	1 cut(s)	458
BstMWI	GCNNNNNNNGC	3 cut(s)	265, 274, 479
BstNI	CCWGG	1 cut(s)	261
BstSCI	CCNGG	3 cut(s)	259, 386, 426
BstUI	CGCG	1 cut(s)	357
BstV1I	GCAGC	5 cut(s)	85, 289, 491, 557, 572
BsuRI	GGCC	2 cut(s)	264, 339
BtgI	CCRYGG	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	472
BtsIMutI	CAGTG	2 cut(s)	171, 195
Cac8I	GCNNGC	1 cut(s)	266
Cfr10I	RCCGGY	1 cut(s)	273
Cfr13I	GGNCC	1 cut(s)	531
Csp6I	GTAC	2 cut(s)	384, 454
CviAII	CATG	2 cut(s)	316, 528
CviQI	GTAC	2 cut(s)	384, 454
DdeI	CTNAG	2 cut(s)	374, 396
DpnI	GATC	1 cut(s)	460
DpnII	GATC	1 cut(s)	458
EaeI	YGGCCR	1 cut(s)	262
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	531
EcoRI	GAATTC	1 cut(s)	306
EcoRII	CCWGG	1 cut(s)	259
FaeI	CATG	2 cut(s)	319, 531
FaiI	YATR	9 cut(s)	9, 11, 66, 216, 271, 285, 317, 529, 571
FaqI	GGGAC	1 cut(s)	378
FatI	CATG	2 cut(s)	315, 527
Fnu4HI	GCNGC	5 cut(s)	99, 278, 480, 546, 561
FokI	GGATG	1 cut(s)	479
Fsp4HI	GCNGC	5 cut(s)	99, 278, 480, 546, 561
FspBI	CTAG	1 cut(s)	144
GluI	GCNGC	5 cut(s)	99, 278, 480, 546, 561
GsaI	CCCAGC	1 cut(s)	614
GsuI	CTGGAG	1 cut(s)	112
HaeIII	GGCC	2 cut(s)	264, 339
HapII	CCGG	3 cut(s)	274, 387, 427
Hin1II	CATG	2 cut(s)	319, 531
HincII	GTYRAC	1 cut(s)	393
HindII	GTYRAC	1 cut(s)	393
HinfI	GANTC	1 cut(s)	193
HpaI	GTTAAC	1 cut(s)	393
HpaII	CCGG	3 cut(s)	274, 387, 427
HphI	GGTGA	3 cut(s)	35, 55, 192
Hpy166II	GTNNAC	1 cut(s)	393
Hpy188III	TCNNGA	2 cut(s)	107, 443
Hpy8I	GTNNAC	1 cut(s)	393
HpyAV	CCTTC	1 cut(s)	47
HpyCH4III	ACNGT	3 cut(s)	115, 139, 295
HpyCH4V	TGCA	5 cut(s)	35, 161, 299, 505, 560
HpyF10VI	GCNNNNNNNGC	3 cut(s)	265, 274, 479
HpyF3I	CTNAG	2 cut(s)	374, 396
Hsp92II	CATG	2 cut(s)	319, 531
KpnI	GGTACC	2 cut(s)	387, 457
KspAI	GTTAAC	1 cut(s)	393
Kzo9I	GATC	1 cut(s)	458
LmnI	GCTCC	2 cut(s)	256, 351
Lsp1109I	GCAGC	5 cut(s)	85, 289, 491, 557, 572
MaeI	CTAG	1 cut(s)	144
MaeIII	GTNAC	5 cut(s)	43, 67, 164, 236, 536
MalI	GATC	1 cut(s)	460
MboI	GATC	1 cut(s)	458
MboII	GAAGA	3 cut(s)	40, 315, 419
MlsI	TGGCCA	1 cut(s)	264
MluCI	AATT	3 cut(s)	150, 184, 306
MluNI	TGGCCA	1 cut(s)	264
MnlI	CCTC	6 cut(s)	74, 87, 257, 353, 391, 463
Mox20I	TGGCCA	1 cut(s)	264
MroXI	GAANNNNTTC	2 cut(s)	139, 411
MscI	TGGCCA	1 cut(s)	264
MseI	TTAA	3 cut(s)	129, 183, 392
Msp20I	TGGCCA	1 cut(s)	264
MspA1I	CMGCKG	1 cut(s)	548
MspI	CCGG	3 cut(s)	274, 387, 427
MspR9I	CCNGG	3 cut(s)	261, 388, 428
Mva1269I	GAATGC	1 cut(s)	438
MvaI	CCWGG	1 cut(s)	261
MvnI	CGCG	1 cut(s)	357
MwoI	GCNNNNNNNGC	3 cut(s)	265, 274, 479
NciI	CCSGG	2 cut(s)	388, 428
NdeII	GATC	1 cut(s)	458
NlaIII	CATG	2 cut(s)	319, 531
NlaIV	GGNNCC	5 cut(s)	258, 347, 385, 455, 533
NmuCI	GTSAC	3 cut(s)	43, 67, 536
PctI	GAATGC	1 cut(s)	438
PdmI	GAANNNNTTC	2 cut(s)	139, 411
PfeI	GAWTC	1 cut(s)	193
PflFI	GACNNNGTC	1 cut(s)	623
PkrI	GCNGC	5 cut(s)	100, 279, 481, 547, 562
Psp6I	CCWGG	1 cut(s)	259
PspFI	CCCAGC	1 cut(s)	610
PspGI	CCWGG	1 cut(s)	259
PspN4I	GGNNCC	5 cut(s)	258, 347, 385, 455, 533
PspPI	GGNCC	1 cut(s)	531
PsyI	GACNNNGTC	1 cut(s)	623
RsaI	GTAC	2 cut(s)	385, 455
RsaNI	GTAC	2 cut(s)	384, 454
SaqAI	TTAA	3 cut(s)	129, 183, 392
SatI	GCNGC	5 cut(s)	99, 278, 480, 546, 561
Sau3AI	GATC	1 cut(s)	458
Sau96I	GGNCC	1 cut(s)	531
ScrFI	CCNGG	3 cut(s)	261, 388, 428
SetI	ASST	4 cut(s)	58, 249, 331, 385
SinI	GGWCC	1 cut(s)	531
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
Sse9I	AATT	3 cut(s)	150, 184, 306
SsiI	CCGC	3 cut(s)	120, 357, 548
SspI	AATATT	1 cut(s)	556
SspMI	CTAG	1 cut(s)	144
StyD4I	CCNGG	3 cut(s)	259, 386, 426
TaaI	ACNGT	3 cut(s)	115, 139, 295
TasI	AATT	3 cut(s)	150, 184, 306
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	3 cut(s)	129, 183, 392
Tru9I	TTAA	3 cut(s)	129, 183, 392
TscAI	CASTG	2 cut(s)	178, 195
TseFI	GTSAC	3 cut(s)	43, 67, 536
TseI	GCWGC	5 cut(s)	98, 277, 479, 545, 560
Tsp45I	GTSAC	3 cut(s)	43, 67, 536
TspDTI	ATGAA	1 cut(s)	66
TspGWI	ACGGA	1 cut(s)	565
TspRI	CASTG	2 cut(s)	178, 195
Tth111I	GACNNNGTC	1 cut(s)	623
VpaK11BI	GGWCC	1 cut(s)	531
XapI	RAATTY	1 cut(s)	306
XmnI	GAANNNNTTC	2 cut(s)	139, 411
XspI	CTAG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.