Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0009356

Physical Location & Seq

Genomic Coordinates Forward (+)

7824011 .. 7825018

Gene Structure 1008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1043400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGGGTGGAGAGCTGATGGTGGTCTTTGGCTCCTTTTAACTGAGGATTTTGAAGAAGTTCCAGTCCAAAGCCGGGGGTTTGCCATTCTTGATGTTGGGTACCGATCAAAGGATGAGGCTTGGGCAGCAGGGGGAAGTGGGATTTTACTGCAAACTAACAATGGTGGTAAGACATGGACCCGTGACAAAGCAGCAGATAATATTGCAGCCAATCTATACTCCGTGAAGTTTATTGATGACAATAAAGGATTTGTGCTGGGGAATGATGGGGTCTTGCTTCGGTATCTTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009533 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016043 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0055035 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PSII_BNR

Protein Analysis

98

Amino Acids

10.58

Weight (kDa)

4.73

Isoelectric Point (pI)

37.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSII_BNR	PF14870	15 - 95	3.4e-26	Photosynthesis system II assembly factor YCF48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23120 AT5G23120
fragaria_vesca	FvH4_4g36890 FvH4_4g36890
malus_domestica	MD00G1043400.v1.1 MD13G1005900.v1.1 MD15G1106700.v1.1 MD16G1002000.v1.1
prunus_persica	Prupe.1G347100_v2.0.a1
pyrus_communis	pycom13g00490 pycom16g00370
rosa_chinensis	RchiOBHm_Chr4g0446671
rosa_laevigata	RLG00000005641
rosa_multiflora	Rmu_sc0001753.1_g000042 Rmu_sc0001753.1_g000043
rosa_roxburghii	Rroxscaffold_5G00387030
rosa_rugosa	Rorug04G0373600
rosa_samantha	Rh4AG435000 Rh4BG444000 Rh4CG461300 Rh4DG442800
rosa_wichuraiana	Rw4G037190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	99
AccB1I	GGYRCC	1 cut(s)	99
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	2 cut(s)	73, 109
AgsI	TTSAA	1 cut(s)	53
AluBI	AGCT	1 cut(s)	14
AluI	AGCT	1 cut(s)	14
ApeKI	GCWGC	3 cut(s)	125, 191, 206
Asp700I	GAANNNNTTC	1 cut(s)	57
Asp718I	GGTACC	1 cut(s)	99
AspS9I	GGNCC	1 cut(s)	177
AsuC2I	CCSGG	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	177
BanI	GGYRCC	1 cut(s)	99
BbvI	GCAGC	3 cut(s)	137, 203, 218
BccI	CCATC	2 cut(s)	11, 260
BcnI	CCSGG	1 cut(s)	74
BisI	GCNGC	3 cut(s)	126, 192, 207
BlsI	GCNGC	3 cut(s)	127, 193, 208
Bme1390I	CCNGG	1 cut(s)	74
Bme18I	GGWCC	1 cut(s)	177
BmgT120I	GGNCC	1 cut(s)	177
BmiI	GGNNCC	3 cut(s)	32, 101, 179
BmrFI	CCNGG	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 109
Bse1I	ACTGG	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	73
BseGI	GGATG	1 cut(s)	118
BseLI	CCNNNNNNNGG	2 cut(s)	73, 109
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	62
BseXI	GCAGC	3 cut(s)	137, 203, 218
BseYI	CCCAGC	1 cut(s)	256
BshNI	GGYRCC	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	73
BslI	CCNNNNNNNGG	2 cut(s)	73, 109
Bsp143I	GATC	1 cut(s)	104
BspCNI	CTCAG	1 cut(s)	34
BspLI	GGNNCC	3 cut(s)	32, 101, 179
BspT107I	GGYRCC	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	62
BssECI	CCNNGG	1 cut(s)	73
BssMI	GATC	1 cut(s)	104
BstDEI	CTNAG	1 cut(s)	42
BstF5I	GGATG	1 cut(s)	118
BstKTI	GATC	1 cut(s)	107
BstMBI	GATC	1 cut(s)	104
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	72
BstV1I	GCAGC	3 cut(s)	137, 203, 218
BtsCI	GGATG	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	177
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	1 cut(s)	174
CviJI	RGCY	5 cut(s)	14, 31, 72, 119, 209
CviKI_1	RGCY	5 cut(s)	14, 31, 72, 119, 209
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	1 cut(s)	106
DpnII	GATC	1 cut(s)	104
Eco47I	GGWCC	1 cut(s)	177
FaeI	CATG	1 cut(s)	177
FaiI	YATR	2 cut(s)	175, 217
FatI	CATG	1 cut(s)	173
Fnu4HI	GCNGC	3 cut(s)	126, 192, 207
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	3 cut(s)	126, 192, 207
GluI	GCNGC	3 cut(s)	126, 192, 207
GsaI	CCCAGC	1 cut(s)	260
HapII	CCGG	1 cut(s)	73
Hin1II	CATG	1 cut(s)	177
HpaII	CCGG	1 cut(s)	73
Hpy188III	TCNNGA	1 cut(s)	89
HpyCH4V	TGCA	2 cut(s)	151, 206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	1 cut(s)	42
Hsp92II	CATG	1 cut(s)	177
KpnI	GGTACC	1 cut(s)	103
Kzo9I	GATC	1 cut(s)	104
LmnI	GCTCC	1 cut(s)	36
LpnPI	CCDG	4 cut(s)	75, 86, 114, 242
Lsp1109I	GCAGC	3 cut(s)	137, 203, 218
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	1 cut(s)	106
MboI	GATC	1 cut(s)	104
MboII	GAAGA	1 cut(s)	65
MnlI	CCTC	2 cut(s)	37, 109
MroXI	GAANNNNTTC	1 cut(s)	57
MseI	TTAA	1 cut(s)	38
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	125
NciI	CCSGG	1 cut(s)	74
NdeII	GATC	1 cut(s)	104
NlaIII	CATG	1 cut(s)	177
NlaIV	GGNNCC	3 cut(s)	32, 101, 179
NmuCI	GTSAC	1 cut(s)	182
PdmI	GAANNNNTTC	1 cut(s)	57
PkrI	GCNGC	3 cut(s)	127, 193, 208
PspFI	CCCAGC	1 cut(s)	256
PspN4I	GGNNCC	3 cut(s)	32, 101, 179
PspPI	GGNCC	1 cut(s)	177
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	38
SatI	GCNGC	3 cut(s)	126, 192, 207
Sau3AI	GATC	1 cut(s)	104
Sau96I	GGNCC	1 cut(s)	177
ScrFI	CCNGG	1 cut(s)	74
SetI	ASST	1 cut(s)	16
SinI	GGWCC	1 cut(s)	177
SspI	AATATT	1 cut(s)	202
StyD4I	CCNGG	1 cut(s)	72
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	3 cut(s)	125, 191, 206
Tsp45I	GTSAC	1 cut(s)	182
TspGWI	ACGGA	1 cut(s)	211
VpaK11BI	GGWCC	1 cut(s)	177
XmnI	GAANNNNTTC	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.