Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0009356

Physical Location & Seq

Genomic Coordinates Forward (+)

7475802 .. 7477694

Gene Structure 1893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1106700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGGAGTGTTGGCTGTGTATATAAAGGCAACTGGTGAGAAGAGTGCAGAGATGGTGACTGACGAAGGTGCAATTTATGTGACATCAAACAGAGGCTACAACTGGAGGGCTGCTGTTCAGGAGACTGTTTCCGCTACTCTTAATAGAACAGTTTCTAGTGGAATTAGTGGTGCAAGTTACTACACTGGAACTTTTAATTCTGTGAATCGCTCACCCGATGGAAAATATGTTGCCGTCTCAAGCCGCGGTAATTTCTATCTCACTTGGGAGCCTGGCCAGCCATACTGGCAGCCACATAACAGAACAATTGCAAGAAGAATTCAAAACATGGGATGGAGAGCCGATGGTGGTCTTTGGCATTGTACAGTTTGTACTTGCACCCAAACAAGCAGATATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009533 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016043 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0055035 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PSII_BNR

Protein Analysis

134

Amino Acids

14.75

Weight (kDa)

9.3

Isoelectric Point (pI)

34.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSII_BNR	PF14870	7 - 122	4.6e-41	Photosynthesis system II assembly factor YCF48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0009356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23120 AT5G23120
fragaria_vesca	FvH4_4g36890 FvH4_4g36890
malus_domestica	MD00G1043400.v1.1 MD13G1005900.v1.1 MD15G1106700.v1.1 MD16G1002000.v1.1
prunus_persica	Prupe.1G347100_v2.0.a1
pyrus_communis	pycom13g00490 pycom16g00370
rosa_chinensis	RchiOBHm_Chr4g0446671
rosa_laevigata	RLG00000005641
rosa_multiflora	Rmu_sc0001753.1_g000042 Rmu_sc0001753.1_g000043
rosa_roxburghii	Rroxscaffold_5G00387030
rosa_rugosa	Rorug04G0373600
rosa_samantha	Rh4AG435000 Rh4BG444000 Rh4CG461300 Rh4DG442800
rosa_wichuraiana	Rw4G037190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	246
AciI	CCGC	3 cut(s)	132, 244, 246
AcoI	YGGCCR	1 cut(s)	274
AcsI	RAATTY	1 cut(s)	318
AfaI	GTAC	2 cut(s)	364, 373
AgsI	TTSAA	1 cut(s)	323
AjnI	CCWGG	1 cut(s)	271
Alw26I	GTCTC	2 cut(s)	116, 241
AoxI	GGCC	1 cut(s)	274
ApeKI	GCWGC	2 cut(s)	110, 289
ApoI	RAATTY	1 cut(s)	318
Asp700I	GAANNNNTTC	1 cut(s)	151
AsuHPI	GGTGA	3 cut(s)	47, 67, 204
BalI	TGGCCA	1 cut(s)	276
BbvI	GCAGC	2 cut(s)	97, 301
BccI	CCATC	4 cut(s)	46, 212, 327, 338
BceAI	ACGGC	1 cut(s)	218
BciT130I	CCWGG	1 cut(s)	273
BcoDI	GTCTC	2 cut(s)	116, 241
BfaI	CTAG	1 cut(s)	156
BglI	GCCNNNNNGGC	1 cut(s)	286
BisI	GCNGC	3 cut(s)	111, 244, 290
BlsI	GCNGC	3 cut(s)	112, 245, 291
Bme1390I	CCNGG	1 cut(s)	273
BmiI	GGNNCC	1 cut(s)	270
BmrFI	CCNGG	1 cut(s)	273
BpmI	CTGGAG	1 cut(s)	124
BpuEI	CTTGAG	1 cut(s)	223
BsaJI	CCNNGG	1 cut(s)	244
Bse1I	ACTGG	4 cut(s)	37, 107, 190, 290
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	1 cut(s)	244
BseGI	GGATG	1 cut(s)	338
BseNI	ACTGG	4 cut(s)	37, 107, 190, 290
BseXI	GCAGC	2 cut(s)	97, 301
BsgI	GTGCAG	1 cut(s)	66
Bsh1236I	CGCG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	276
BsmAI	GTCTC	2 cut(s)	116, 241
BsmBI	CGTCTC	1 cut(s)	241
BsnI	GGCC	1 cut(s)	276
Bsp1407I	TGTACA	1 cut(s)	362
BspACI	CCGC	3 cut(s)	132, 244, 246
BspANI	GGCC	1 cut(s)	276
BspFNI	CGCG	1 cut(s)	246
BspHI	TCATGA	1 cut(s)	398
BspLI	GGNNCC	1 cut(s)	270
BsrGI	TGTACA	1 cut(s)	362
BsrI	ACTGG	4 cut(s)	37, 107, 190, 290
BssECI	CCNNGG	1 cut(s)	244
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	3 cut(s)	127, 151, 367
Bst6I	CTCTTC	1 cut(s)	35
BstAUI	TGTACA	1 cut(s)	362
BstC8I	GCNNGC	1 cut(s)	278
BstDSI	CCRYGG	1 cut(s)	244
BstF5I	GGATG	1 cut(s)	338
BstFNI	CGCG	1 cut(s)	246
BstMAI	GTCTC	2 cut(s)	116, 241
BstMWI	GCNNNNNNNGC	2 cut(s)	277, 286
BstNI	CCWGG	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	271
BstUI	CGCG	1 cut(s)	246
BstV1I	GCAGC	2 cut(s)	97, 301
BsuRI	GGCC	1 cut(s)	276
BtgI	CCRYGG	1 cut(s)	244
BtsCI	GGATG	1 cut(s)	338
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	278
CciI	TCATGA	1 cut(s)	398
Cfr42I	CCGCGG	1 cut(s)	247
Csp6I	GTAC	2 cut(s)	363, 372
CviAII	CATG	2 cut(s)	328, 399
CviJI	RGCY	9 cut(s)	14, 96, 110, 243, 271, 276, 280, 292, 341
CviKI_1	RGCY	9 cut(s)	14, 96, 110, 243, 271, 276, 280, 292, 341
CviQI	GTAC	2 cut(s)	363, 372
EaeI	YGGCCR	1 cut(s)	274
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
EcoRI	GAATTC	1 cut(s)	318
EcoRII	CCWGG	1 cut(s)	271
Esp3I	CGTCTC	1 cut(s)	241
FaeI	CATG	2 cut(s)	331, 402
FaiI	YATR	8 cut(s)	21, 23, 78, 228, 283, 297, 329, 400
FatI	CATG	2 cut(s)	327, 398
Fnu4HI	GCNGC	3 cut(s)	111, 244, 290
FokI	GGATG	1 cut(s)	345
Fsp4HI	GCNGC	3 cut(s)	111, 244, 290
FspBI	CTAG	1 cut(s)	156
GluI	GCNGC	3 cut(s)	111, 244, 290
GsuI	CTGGAG	1 cut(s)	124
HaeIII	GGCC	1 cut(s)	276
Hin1II	CATG	2 cut(s)	331, 402
HinfI	GANTC	1 cut(s)	205
HphI	GGTGA	3 cut(s)	47, 67, 204
Hpy188III	TCNNGA	2 cut(s)	119, 399
HpyAV	CCTTC	1 cut(s)	59
HpyCH4III	ACNGT	3 cut(s)	127, 151, 367
HpyCH4V	TGCA	5 cut(s)	47, 71, 173, 311, 378
HpyF10VI	GCNNNNNNNGC	2 cut(s)	277, 286
Hsp92II	CATG	2 cut(s)	331, 402
KspI	CCGCGG	1 cut(s)	247
LmnI	GCTCC	1 cut(s)	268
LpnPI	CCDG	8 cut(s)	18, 88, 104, 171, 258, 271, 285, 290
Lsp1109I	GCAGC	2 cut(s)	97, 301
MaeI	CTAG	1 cut(s)	156
MaeIII	GTNAC	3 cut(s)	55, 79, 176
MboII	GAAGA	2 cut(s)	52, 327
MfeI	CAATTG	1 cut(s)	306
MlsI	TGGCCA	1 cut(s)	276
MluCI	AATT	6 cut(s)	72, 162, 196, 250, 306, 318
MluNI	TGGCCA	1 cut(s)	276
MnlI	CCTC	2 cut(s)	86, 99
Mox20I	TGGCCA	1 cut(s)	276
MroXI	GAANNNNTTC	1 cut(s)	151
MscI	TGGCCA	1 cut(s)	276
MseI	TTAA	2 cut(s)	141, 195
Msp20I	TGGCCA	1 cut(s)	276
MspA1I	CMGCKG	1 cut(s)	246
MspR9I	CCNGG	1 cut(s)	273
MunI	CAATTG	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	273
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	2 cut(s)	277, 286
NlaIII	CATG	2 cut(s)	331, 402
NlaIV	GGNNCC	1 cut(s)	270
NmuCI	GTSAC	2 cut(s)	55, 79
PagI	TCATGA	1 cut(s)	398
PdmI	GAANNNNTTC	1 cut(s)	151
PfeI	GAWTC	1 cut(s)	205
PkrI	GCNGC	3 cut(s)	112, 245, 291
Psp6I	CCWGG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	270
RsaI	GTAC	2 cut(s)	364, 373
RsaNI	GTAC	2 cut(s)	363, 372
SacII	CCGCGG	1 cut(s)	247
SaqAI	TTAA	2 cut(s)	141, 195
SatI	GCNGC	3 cut(s)	111, 244, 290
ScrFI	CCNGG	1 cut(s)	273
SetI	ASST	1 cut(s)	70
Sfr303I	CCGCGG	1 cut(s)	247
SgrBI	CCGCGG	1 cut(s)	247
SmlI	CTYRAG	1 cut(s)	238
SmoI	CTYRAG	1 cut(s)	238
Sse9I	AATT	6 cut(s)	72, 162, 196, 250, 306, 318
SsiI	CCGC	3 cut(s)	132, 244, 246
SspMI	CTAG	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	271
TaaI	ACNGT	3 cut(s)	127, 151, 367
TasI	AATT	6 cut(s)	72, 162, 196, 250, 306, 318
TatI	WGTACW	2 cut(s)	362, 371
TauI	GCSGC	1 cut(s)	246
TfiI	GAWTC	1 cut(s)	205
Tru1I	TTAA	2 cut(s)	141, 195
Tru9I	TTAA	2 cut(s)	141, 195
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	2 cut(s)	55, 79
TseI	GCWGC	2 cut(s)	110, 289
Tsp45I	GTSAC	2 cut(s)	55, 79
TspDTI	ATGAA	1 cut(s)	387
TspRI	CASTG	1 cut(s)	190
XapI	RAATTY	1 cut(s)	318
XmnI	GAANNNNTTC	1 cut(s)	151
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.