Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001753.1

Orthogroup ID

OG0009356

Physical Location & Seq

Genomic Coordinates Reverse (-)

199729 .. 200598

Gene Structure 870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001753.1_g000042.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

atgacccacatagacattcttgatgttgggtaccgatcaaaggatgaggcttgggcggcaggtggaagtgggattttattgcgaactaccaatggtggcaagacatgggtccgtgacaaagcagccgacaatattgctgcaaatctatactctgtaaagtttatcgatgacaatcaaggatttgtgctggggaacgatggggtattgcttcggtatcttggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009533 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016043 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0055035 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PSII_BNR

Protein Analysis

74

Amino Acids

8.03

Weight (kDa)

5.57

Isoelectric Point (pI)

19.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23120 AT5G23120
fragaria_vesca	FvH4_4g36890 FvH4_4g36890
malus_domestica	MD00G1043400.v1.1 MD13G1005900.v1.1 MD15G1106700.v1.1 MD16G1002000.v1.1
prunus_persica	Prupe.1G347100_v2.0.a1
pyrus_communis	pycom13g00490 pycom16g00370
rosa_chinensis	RchiOBHm_Chr4g0446671
rosa_laevigata	RLG00000005641
rosa_multiflora	Rmu_sc0001753.1_g000042 Rmu_sc0001753.1_g000043
rosa_roxburghii	Rroxscaffold_5G00387030
rosa_rugosa	Rorug04G0373600
rosa_samantha	Rh4AG435000 Rh4BG444000 Rh4CG461300 Rh4DG442800
rosa_wichuraiana	Rw4G037190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	50
Acc36I	ACCTGC	1 cut(s)	50
Acc65I	GGTACC	1 cut(s)	30
AccB1I	GGYRCC	1 cut(s)	30
AciI	CCGC	1 cut(s)	56
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	40
ApeKI	GCWGC	2 cut(s)	122, 137
Asp718I	GGTACC	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	109
BanI	GGYRCC	1 cut(s)	30
BbvI	GCAGC	2 cut(s)	124, 134
BccI	CCATC	1 cut(s)	191
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BfuAI	ACCTGC	1 cut(s)	50
BisI	GCNGC	3 cut(s)	57, 123, 138
BlsI	GCNGC	3 cut(s)	58, 124, 139
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	2 cut(s)	32, 110
BoxI	GACNNNNGTC	1 cut(s)	107
Bsa29I	ATCGAT	1 cut(s)	165
BsaBI	GATNNNNATC	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse8I	GATNNNNATC	1 cut(s)	171
BseCI	ATCGAT	1 cut(s)	165
BseGI	GGATG	1 cut(s)	49
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseXI	GCAGC	2 cut(s)	124, 134
BseYI	CCCAGC	1 cut(s)	187
BshNI	GGYRCC	1 cut(s)	30
BshVI	ATCGAT	1 cut(s)	165
BslI	CCNNNNNNNGG	1 cut(s)	40
Bsp143I	GATC	1 cut(s)	35
BspACI	CCGC	1 cut(s)	56
BspDI	ATCGAT	1 cut(s)	165
BspLI	GGNNCC	2 cut(s)	32, 110
BspMI	ACCTGC	1 cut(s)	50
BspT107I	GGYRCC	1 cut(s)	30
BssMI	GATC	1 cut(s)	35
BstF5I	GGATG	1 cut(s)	49
BstKTI	GATC	1 cut(s)	38
BstMBI	GATC	1 cut(s)	35
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstPAI	GACNNNNGTC	1 cut(s)	107
BstV1I	GCAGC	2 cut(s)	124, 134
Bsu15I	ATCGAT	1 cut(s)	165
BsuTUI	ATCGAT	1 cut(s)	165
BtsCI	GGATG	1 cut(s)	49
BveI	ACCTGC	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	109
ClaI	ATCGAT	1 cut(s)	165
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	1 cut(s)	105
CviJI	RGCY	2 cut(s)	50, 125
CviKI_1	RGCY	2 cut(s)	50, 125
CviQI	GTAC	1 cut(s)	31
DpnI	GATC	1 cut(s)	37
DpnII	GATC	1 cut(s)	35
Eco47I	GGWCC	1 cut(s)	109
FaeI	CATG	1 cut(s)	108
FaiI	YATR	3 cut(s)	11, 106, 148
FatI	CATG	1 cut(s)	104
Fnu4HI	GCNGC	3 cut(s)	57, 123, 138
FokI	GGATG	1 cut(s)	56
Fsp4HI	GCNGC	3 cut(s)	57, 123, 138
GluI	GCNGC	3 cut(s)	57, 123, 138
GsaI	CCCAGC	1 cut(s)	191
Hin1II	CATG	1 cut(s)	108
Hpy188III	TCNNGA	1 cut(s)	20
HpyCH4V	TGCA	1 cut(s)	140
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
Hsp92II	CATG	1 cut(s)	108
KpnI	GGTACC	1 cut(s)	34
Kzo9I	GATC	1 cut(s)	35
LpnPI	CCDG	2 cut(s)	45, 173
Lsp1109I	GCAGC	2 cut(s)	124, 134
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	1 cut(s)	37
MboI	GATC	1 cut(s)	35
MnlI	CCTC	1 cut(s)	40
MwoI	GCNNNNNNNGC	1 cut(s)	56
NdeII	GATC	1 cut(s)	35
NlaIII	CATG	1 cut(s)	108
NlaIV	GGNNCC	2 cut(s)	32, 110
NmuCI	GTSAC	1 cut(s)	113
PaqCI	CACCTGC	1 cut(s)	50
PkrI	GCNGC	3 cut(s)	58, 124, 139
PshAI	GACNNNNGTC	1 cut(s)	107
PspFI	CCCAGC	1 cut(s)	187
PspN4I	GGNNCC	2 cut(s)	32, 110
PspPI	GGNCC	1 cut(s)	109
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SatI	GCNGC	3 cut(s)	57, 123, 138
Sau3AI	GATC	1 cut(s)	35
Sau96I	GGNCC	1 cut(s)	109
SetI	ASST	1 cut(s)	64
SgeI	CNNG	8 cut(s)	32, 63, 72, 112, 117, 125, 188, 200
SinI	GGWCC	1 cut(s)	109
SsiI	CCGC	1 cut(s)	56
SspI	AATATT	1 cut(s)	133
TaqI	TCGA	1 cut(s)	165
TauI	GCSGC	1 cut(s)	59
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	2 cut(s)	122, 137
Tsp45I	GTSAC	1 cut(s)	113
TspGWI	ACGGA	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.