Prupe.1G347100_v2.0.a1

Photosystem II stability assembly factor HCF136

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
32452795 .. 32456467
3673 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G347100.1

Sequence Viewer

Length: 1245 bp
ATGAAAATGGCGACTACTCTGCAACTGACGACGGACTTGTCCAAACCAATAATTGTGGTGAAACCCTCTCTTGAATTCGCAAGCACTCCTCGTCATTGCCGAACCTCTCTATCTCTACCTCGCTTCAATAATATTGCTAGAGCTTCCTCTTCCTCTTCTGATTCTTCGCTGGTGAGTCGCAGACATTTTGTTTCCGAGACTGCGGCGCTGTCTCTGACCCTCACTACTCTGCCGTTGTTTGGATCCATACAACCGGCCAAGTCGGAAGAGTCCGCCCTTTCCGAATGGGAGAAAGTGTCCCTTCCTATCGACCCCGGCGTTGTCCTTCTCGACATTGCTTTTGTGCCCGAGGACCCTAAGCACGGTTTTCTTTTGGGGACCAGGCAAACCATTTTAGAGACAAAGGATGGTGGAGACACTTGGGTTCCACGTTCAATTCCGTCAGCTGAAGACGAAGATTTCAACTACAGATTCAATTCCATTAGCTTCAAAGGGAAGGAGGGTTGGATTGTTGGAAAACCTGCAATTTTGTTGCACACTTCTGATTCTGGAAACAGCTGGGAAAGGATACCGCTAAGCTCTCAGCTTCCTGGAGATATGGTTTATATAAAGGCAACTGGTGAGAAGAGTGCAGAGATGGTGACTGACGAAGGTGCAATTTATATTACATCAAATAGAGGCTACAACTGGAAGGCTGCTGTTCAGGAGACTGTTTCAGCTACTCTTAATAGAACAGTTTCTAGTGGCATTAGCGGTGCAAGTTACTACACAGGAACTTTTAATTCAGTGAACCGCTCGCCTGATGGAAACTATGTGGCTGTCTCAAGCCGTGGTAACTTCTATCTTACTTGGGAGCCTGGCCAGCCATTCTGGCAGCCACATAACAGAACAGTTGCAAGAAGAATTCAAAACATGGGTTGGAGAGCCGATGGTGGTCTTTGGCTTCTTGTTCGTGGAGGAGGACTTTATCTGAGTAAAGGTACAGGGTTAACAGAGGAGTTTGAAGAAGTTCCAGTCCAAAGCCGGGGTTTTGGCATTCTTGATGTTGGGTACCGATCAAAGGATGAAGCTTGGGCAGCTGGGGGGAGTGGGATTTTGTTGCGAACTACCAATGGTGGCAAGACATGGACCCGTGACAAAGCAGCTGACAACATTGCAGCAAATCTATACTCTGTAAAATTTATCGATGACAGTACAGGATTTGTGCTGGGAAACGATGGGGTCTTGCTTCGGTATCTTGGATGA

Protein Analysis

415

Amino Acids

45.17

Weight (kDa)

6.56

Isoelectric Point (pI)

37.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 37
Acc36I ACCTGC 1 cut(s) 529
Acc65I GGTACC 1 cut(s) 1050
AccB1I GGYRCC 1 cut(s) 1050
AccBSI CCGCTC 1 cut(s) 795
AciI CCGC 5 cut(s) 203, 273, 572, 753, 793
AclWI GGATC 2 cut(s) 237, 250
AcoI YGGCCR 2 cut(s) 255, 859
AcsI RAATTY 3 cut(s) 74, 903, 1178
AcuI CTGAAG 1 cut(s) 468
AfaI GTAC 3 cut(s) 982, 1052, 1195
AfiI CCNNNNNNNGG 4 cut(s) 239, 362, 1024, 1060
AgsI TTSAA 8 cut(s) 74, 127, 435, 463, 475, 490, 908, 1004
AjnI CCWGG 3 cut(s) 380, 589, 856
Alw26I GTCTC 6 cut(s) 191, 216, 392, 408, 701, 826
AlwI GGATC 2 cut(s) 237, 250
Ama87I CYCGRG 1 cut(s) 347
AoxI GGCC 2 cut(s) 255, 859
ApeKI GCWGC 5 cut(s) 695, 874, 1076, 1142, 1157
ApoI RAATTY 3 cut(s) 74, 903, 1178
ArsI GACNNNNNNTTYG 2 cut(s) 323, 355
Asp700I GAANNNNTTC 2 cut(s) 736, 1008
Asp718I GGTACC 1 cut(s) 1050
AspLEI GCGC 1 cut(s) 208
AspS9I GGNCC 3 cut(s) 352, 378, 1128
AsuC2I CCSGG 2 cut(s) 315, 1025
AsuHPI GGTGA 4 cut(s) 70, 184, 632, 652
AvaI CYCGRG 1 cut(s) 347
AvaII GGWCC 3 cut(s) 352, 378, 1128
BaeGI GKGCMC 1 cut(s) 348
BalI TGGCCA 1 cut(s) 861
BamHI GGATCC 1 cut(s) 242
BanI GGYRCC 1 cut(s) 1050
BbsI GAAGAC 1 cut(s) 456
BbvI GCAGC 5 cut(s) 682, 886, 1088, 1154, 1169
BccI CCATC 5 cut(s) 401, 631, 797, 923, 1211
BceAI ACGGC 2 cut(s) 217, 813
BcgI CGANNNNNNTGC 1 cut(s) 35
BciT130I CCWGG 3 cut(s) 382, 591, 858
BciVI GTATCC 1 cut(s) 561
BcnI CCSGG 2 cut(s) 315, 1025
BcoDI GTCTC 6 cut(s) 191, 216, 392, 408, 701, 826
BfaI CTAG 2 cut(s) 138, 741
BfmI CTRYAG 1 cut(s) 466
BfoI RGCGCY 1 cut(s) 209
BfuAI ACCTGC 1 cut(s) 529
BfuI GTATCC 1 cut(s) 561
BglI GCCNNNNNGGC 1 cut(s) 871
BisI GCNGC 6 cut(s) 204, 696, 875, 1077, 1143, 1158
BlpI GCTNAGC 1 cut(s) 575
BlsI GCNGC 6 cut(s) 205, 697, 876, 1078, 1144, 1159
Bme1390I CCNGG 5 cut(s) 315, 382, 591, 858, 1025
Bme18I GGWCC 3 cut(s) 352, 378, 1128
BmeT110I CYCGRG 1 cut(s) 347
BmgT120I GGNCC 3 cut(s) 352, 378, 1128
BmiI GGNNCC 7 cut(s) 244, 354, 379, 426, 855, 1052, 1130
BmrFI CCNGG 5 cut(s) 315, 382, 591, 858, 1025
BpiI GAAGAC 1 cut(s) 456
BpmI CTGGAG 1 cut(s) 612
Bpu10I CCTNAGC 1 cut(s) 357
Bpu1102I GCTNAGC 1 cut(s) 575
BpuEI CTTGAG 1 cut(s) 808
BpuMI CCSGG 2 cut(s) 315, 1025
Bsa29I ATCGAT 1 cut(s) 1185
BsaJI CCNNGG 4 cut(s) 313, 348, 829, 1024
BsaXI ACNNNNNCTCC 4 cut(s) 281, 311, 585, 615
Bsc4I CCNNNNNNNGG 4 cut(s) 239, 362, 1024, 1060
Bse118I RCCGGY 1 cut(s) 253
Bse1I ACTGG 3 cut(s) 622, 692, 1013
Bse3DI GCAATG 3 cut(s) 94, 333, 1152
BseBI CCWGG 3 cut(s) 382, 591, 858
BseCI ATCGAT 1 cut(s) 1185
BseDI CCNNGG 4 cut(s) 313, 348, 829, 1024
BseGI GGATG 2 cut(s) 412, 1069
BseLI CCNNNNNNNGG 4 cut(s) 239, 362, 1024, 1060
BseMI GCAATG 3 cut(s) 94, 333, 1152
BseMII CTCAG 2 cut(s) 596, 962
BseNI ACTGG 3 cut(s) 622, 692, 1013
BseRI GAGGAG 3 cut(s) 78, 972, 1010
BseSI GKGCMC 1 cut(s) 348
BseXI GCAGC 5 cut(s) 682, 886, 1088, 1154, 1169
BseYI CCCAGC 3 cut(s) 558, 1079, 1207
BsgI GTGCAG 1 cut(s) 651
BshFI GGCC 2 cut(s) 257, 861
BshNI GGYRCC 1 cut(s) 1050
BshVI ATCGAT 1 cut(s) 1185
BsiHKCI CYCGRG 1 cut(s) 347
BsiSI CCGG 3 cut(s) 254, 315, 1024
BslFI GGGAC 2 cut(s) 283, 391
BslI CCNNNNNNNGG 4 cut(s) 239, 362, 1024, 1060
BsmAI GTCTC 6 cut(s) 191, 216, 392, 408, 701, 826
BsmFI GGGAC 2 cut(s) 283, 391
BsmI GAATGC 1 cut(s) 1035
BsnI GGCC 2 cut(s) 257, 861
BsoBI CYCGRG 1 cut(s) 347
Bsp1286I GDGCHC 1 cut(s) 348
Bsp143I GATC 2 cut(s) 242, 1055
Bsp1720I GCTNAGC 1 cut(s) 575
BspACI CCGC 5 cut(s) 203, 273, 572, 753, 793
BspANI GGCC 2 cut(s) 257, 861
BspCNI CTCAG 2 cut(s) 595, 963
BspDI ATCGAT 1 cut(s) 1185
BspLI GGNNCC 7 cut(s) 244, 354, 379, 426, 855, 1052, 1130
BspMI ACCTGC 1 cut(s) 529
BspPI GGATC 2 cut(s) 237, 250
BspT107I GGYRCC 1 cut(s) 1050
BsrBI CCGCTC 1 cut(s) 795
BsrDI GCAATG 3 cut(s) 94, 333, 1152
BsrFI RCCGGY 1 cut(s) 253
BsrI ACTGG 3 cut(s) 622, 692, 1013
BssAI RCCGGY 1 cut(s) 253
BssECI CCNNGG 4 cut(s) 313, 348, 829, 1024
BssMI GATC 2 cut(s) 242, 1055
Bst2UI CCWGG 3 cut(s) 382, 591, 858
Bst4CI ACNGT 5 cut(s) 365, 712, 736, 892, 1193
Bst6I CTCTTC 4 cut(s) 154, 160, 261, 620
BstC8I GCNNGC 3 cut(s) 82, 797, 863
BstDEI CTNAG 4 cut(s) 357, 575, 582, 971
BstDSI CCRYGG 1 cut(s) 829
BstF5I GGATG 2 cut(s) 412, 1069
BstH2I RGCGCY 1 cut(s) 209
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 2 cut(s) 245, 1058
BstMAI GTCTC 6 cut(s) 191, 216, 392, 408, 701, 826
BstMBI GATC 2 cut(s) 242, 1055
BstMWI GCNNNNNNNGC 3 cut(s) 862, 871, 1076
BstNI CCWGG 3 cut(s) 382, 591, 858
BstSCI CCNGG 5 cut(s) 313, 380, 589, 856, 1023
BstSFI CTRYAG 1 cut(s) 466
BstSLI GKGCMC 1 cut(s) 348
BstV1I GCAGC 5 cut(s) 682, 886, 1088, 1154, 1169
BstV2I GAAGAC 1 cut(s) 456
BstX2I RGATCY 1 cut(s) 242
BstYI RGATCY 1 cut(s) 242
Bsu15I ATCGAT 1 cut(s) 1185
BsuI GTATCC 1 cut(s) 561
BsuRI GGCC 2 cut(s) 257, 861
BsuTUI ATCGAT 1 cut(s) 1185
BtgI CCRYGG 1 cut(s) 829
BtsCI GGATG 2 cut(s) 412, 1069
BtsIMutI CAGTG 1 cut(s) 792
BveI ACCTGC 1 cut(s) 529
Cac8I GCNNGC 3 cut(s) 82, 797, 863
CfoI GCGC 1 cut(s) 208
Cfr10I RCCGGY 1 cut(s) 253
Cfr13I GGNCC 3 cut(s) 352, 378, 1128
ClaI ATCGAT 1 cut(s) 1185
Csp6I GTAC 3 cut(s) 981, 1051, 1194
CspCI CAANNNNNGTGG 2 cut(s) 36, 71
CviAII CATG 2 cut(s) 913, 1125
CviQI GTAC 3 cut(s) 981, 1051, 1194
DdeI CTNAG 4 cut(s) 357, 575, 582, 971
DpnI GATC 2 cut(s) 244, 1057
DpnII GATC 2 cut(s) 242, 1055
DrdI GACNNNNNNGTC 1 cut(s) 37
DseDI GACNNNNNNGTC 1 cut(s) 37
EaeI YGGCCR 2 cut(s) 255, 859
Eam1104I CTCTTC 4 cut(s) 154, 160, 261, 620
EarI CTCTTC 4 cut(s) 154, 160, 261, 620
EciI GGCGGA 1 cut(s) 262
Eco47I GGWCC 3 cut(s) 352, 378, 1128
Eco57I CTGAAG 1 cut(s) 468
Eco88I CYCGRG 1 cut(s) 347
EcoO109I RGGNCCY 1 cut(s) 352
EcoRI GAATTC 2 cut(s) 74, 903
EcoRII CCWGG 3 cut(s) 380, 589, 856
FaeI CATG 2 cut(s) 916, 1128
FalI AAGNNNNNCTT 2 cut(s) 285, 317
FaqI GGGAC 2 cut(s) 283, 391
FatI CATG 2 cut(s) 912, 1124
Fnu4HI GCNGC 6 cut(s) 204, 696, 875, 1077, 1143, 1158
FokI GGATG 2 cut(s) 419, 1076
Fsp4HI GCNGC 6 cut(s) 204, 696, 875, 1077, 1143, 1158
FspBI CTAG 2 cut(s) 138, 741
GlaI GCGC 1 cut(s) 207
GluI GCNGC 6 cut(s) 204, 696, 875, 1077, 1143, 1158
GsaI CCCAGC 3 cut(s) 562, 1083, 1211
GsuI CTGGAG 1 cut(s) 612
HaeII RGCGCY 1 cut(s) 209
HaeIII GGCC 2 cut(s) 257, 861
HapII CCGG 3 cut(s) 254, 315, 1024
HhaI GCGC 1 cut(s) 208
Hin1II CATG 2 cut(s) 916, 1128
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HincII GTYRAC 1 cut(s) 990
HindII GTYRAC 1 cut(s) 990
HindIII AAGCTT 1 cut(s) 1068
HinfI GANTC 5 cut(s) 161, 175, 269, 471, 545
HpaI GTTAAC 1 cut(s) 990
HpaII CCGG 3 cut(s) 254, 315, 1024
HphI GGTGA 4 cut(s) 70, 184, 632, 652
Hpy166II GTNNAC 2 cut(s) 790, 990
Hpy188I TCNGA 7 cut(s) 160, 196, 216, 265, 283, 544, 972
Hpy188III TCNNGA 5 cut(s) 71, 329, 549, 704, 1040
Hpy8I GTNNAC 2 cut(s) 790, 990
Hpy99I CGWCG 1 cut(s) 34
HpyAV CCTTC 5 cut(s) 311, 335, 490, 644, 685
HpyCH4III ACNGT 5 cut(s) 365, 712, 736, 892, 1193
HpyCH4IV ACGT 1 cut(s) 430
HpyCH4V TGCA 8 cut(s) 22, 524, 535, 632, 656, 758, 896, 1157
HpyF10VI GCNNNNNNNGC 3 cut(s) 862, 871, 1076
HpyF3I CTNAG 4 cut(s) 357, 575, 582, 971
HpySE526I ACGT 1 cut(s) 430
Hsp92II CATG 2 cut(s) 916, 1128
HspAI GCGC 1 cut(s) 206
KpnI GGTACC 1 cut(s) 1054
KspAI GTTAAC 1 cut(s) 990
Kzo9I GATC 2 cut(s) 242, 1055
LmnI GCTCC 1 cut(s) 853
Lsp1109I GCAGC 5 cut(s) 682, 886, 1088, 1154, 1169
MaeI CTAG 2 cut(s) 138, 741
MaeII ACGT 1 cut(s) 430
MaeIII GTNAC 4 cut(s) 640, 761, 833, 1133
MalI GATC 2 cut(s) 244, 1057
MbiI CCGCTC 1 cut(s) 795
MboI GATC 2 cut(s) 242, 1055
MboII GAAGA 9 cut(s) 141, 147, 156, 278, 461, 467, 637, 912, 1016
MflI RGATCY 1 cut(s) 242
MhlI GDGCHC 1 cut(s) 348
MlsI TGGCCA 1 cut(s) 861
MluCI AATT 9 cut(s) 51, 74, 435, 475, 525, 657, 781, 903, 1178
MluNI TGGCCA 1 cut(s) 861
MlyI GAGTC 2 cut(s) 184, 278
MmeI TCCRAC 4 cut(s) 243, 485, 493, 899
Mox20I TGGCCA 1 cut(s) 861
MroXI GAANNNNTTC 2 cut(s) 736, 1008
MscI TGGCCA 1 cut(s) 861
MseI TTAA 3 cut(s) 726, 780, 989
Msp20I TGGCCA 1 cut(s) 861
MspA1I CMGCKG 4 cut(s) 446, 558, 1079, 1145
MspI CCGG 3 cut(s) 254, 315, 1024
MspR9I CCNGG 5 cut(s) 315, 382, 591, 858, 1025
Mva1269I GAATGC 1 cut(s) 1035
MvaI CCWGG 3 cut(s) 382, 591, 858
MwoI GCNNNNNNNGC 3 cut(s) 862, 871, 1076
NciI CCSGG 2 cut(s) 315, 1025
NdeII GATC 2 cut(s) 242, 1055
NlaIII CATG 2 cut(s) 916, 1128
NlaIV GGNNCC 7 cut(s) 244, 354, 379, 426, 855, 1052, 1130
NmuCI GTSAC 2 cut(s) 640, 1133
PcsI WCGNNNNNNNCGW 2 cut(s) 97, 315
PctI GAATGC 1 cut(s) 1035
PdmI GAANNNNTTC 2 cut(s) 736, 1008
PfeI GAWTC 3 cut(s) 161, 471, 545
PfoI TCCNGGA 1 cut(s) 589
PkrI GCNGC 6 cut(s) 205, 697, 876, 1078, 1144, 1159
PleI GAGTC 2 cut(s) 183, 277
PpsI GAGTC 2 cut(s) 183, 277
PpuMI RGGWCCY 1 cut(s) 352
Psp5II RGGWCCY 1 cut(s) 352
Psp6I CCWGG 3 cut(s) 380, 589, 856
PspFI CCCAGC 3 cut(s) 558, 1079, 1207
PspGI CCWGG 3 cut(s) 380, 589, 856
PspN4I GGNNCC 7 cut(s) 244, 354, 379, 426, 855, 1052, 1130
PspPI GGNCC 3 cut(s) 352, 378, 1128
PspPPI RGGWCCY 1 cut(s) 352
PsuI RGATCY 1 cut(s) 242
PvuII CAGCTG 4 cut(s) 446, 558, 1079, 1145
RsaI GTAC 3 cut(s) 982, 1052, 1195
RsaNI GTAC 3 cut(s) 981, 1051, 1194
SaqAI TTAA 3 cut(s) 726, 780, 989
SatI GCNGC 6 cut(s) 204, 696, 875, 1077, 1143, 1158
Sau3AI GATC 2 cut(s) 242, 1055
Sau96I GGNCC 3 cut(s) 352, 378, 1128
SchI GAGTC 2 cut(s) 184, 278
ScrFI CCNGG 5 cut(s) 315, 382, 591, 858, 1025
SduI GDGCHC 1 cut(s) 348
SfcI CTRYAG 1 cut(s) 466
SinI GGWCC 3 cut(s) 352, 378, 1128
SmlI CTYRAG 1 cut(s) 823
SmoI CTYRAG 1 cut(s) 823
Sse9I AATT 9 cut(s) 51, 74, 435, 475, 525, 657, 781, 903, 1178
SsiI CCGC 5 cut(s) 203, 273, 572, 753, 793
SspI AATATT 1 cut(s) 133
SspMI CTAG 2 cut(s) 138, 741
StyD4I CCNGG 5 cut(s) 313, 380, 589, 856, 1023
TaaI ACNGT 5 cut(s) 365, 712, 736, 892, 1193
TaiI ACGT 1 cut(s) 433
TaqI TCGA 3 cut(s) 309, 330, 1185
TasI AATT 9 cut(s) 51, 74, 435, 475, 525, 657, 781, 903, 1178
TatI WGTACW 1 cut(s) 1193
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 3 cut(s) 161, 471, 545
Tru1I TTAA 3 cut(s) 726, 780, 989
Tru9I TTAA 3 cut(s) 726, 780, 989
TscAI CASTG 1 cut(s) 792
TseFI GTSAC 2 cut(s) 640, 1133
TseI GCWGC 5 cut(s) 695, 874, 1076, 1142, 1157
Tsp45I GTSAC 2 cut(s) 640, 1133
TspDTI ATGAA 2 cut(s) 17, 1080
TspGWI ACGGA 2 cut(s) 47, 429
TspRI CASTG 1 cut(s) 792
VpaK11BI GGWCC 3 cut(s) 352, 378, 1128
XapI RAATTY 3 cut(s) 74, 903, 1178
XmnI GAANNNNTTC 2 cut(s) 736, 1008
XspI CTAG 2 cut(s) 138, 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.