MD16G1002000.v1.1

Photosystem II stability assembly factor HCF136

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
127212 .. 130112
2901 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1002000.v1.1.491

Sequence Viewer

Length: 1251 bp
ATGAAAATGGCGACTTCTCTGCAACTGACGACGGACTTCTCCAAACCAACAATTCACCTGAAACCCTCTCTCGAATTCGCAACCACTCCTCGCCGTTTCCGGACCTCTCTATCTATACCTCGAGCTTCTTCTTCGTCCTCCGATTCTTCCCTCGTCAGTCGCAGACACTTCGTTTCTGAGACGGCGGCGCTGTCTCTATCCCTCACCACTTTGCCGCTGTTCGGATCCGTACTGCCGGCCAAGGCGGAGGATCCCGCGCTTTCGGAGTGGGAGAAAGTTTCCCTTCCTATCGACCCCGGGGTCGTCCTCCTCGACATTGCTTTTGTACCCGAGGACCCCAAGCACGGTTTTCTTTTGGGGACCAGGCAAACCCTTTTAGAGACGAAGGATGGCGGAGAAACTTGGGTTCAGCGTTCGATTCCGTCAGCTGAAGATGAAGATTTTAATTACAGATTCAATGCCATAAGCTTCAAAGGGAAGGAGGGTTGGATTGTTGGAAAGCCTGCAATTCTGTTGCACACCTCTGATTCCGGAGACAGCTGGGAAAGGATACCGCTAAGCTCTCAGCTTCCTGGAGATATGGTGTATATAAAGGCAACTGGTGAGAAGAGTGCAGAGATGGTGACTGACGAAGGTGCAATTTATGTGACATCAAACAGAGGCTACAACTGGAGGGCTGCTGTTCAGGAGACTGTTTCCGCTACTCTTAATAGAACAGTTTCTAGTGGAATTAGTGGTGCAAGTTACTACACTGGAACTTTTAATTCTGTGAATCGCTCACCCGATGGAAAATATGTTGCCGTCTCAAGCCGCGGTAATTTCTATCTCACTTGGGAGCCTGGCCAGCCATACTGGCAGCCACATAACAGAACAATTGCAAGAAGAATTCAAAACATGGGATGGAGAGCCGATGGTGGTCTTTGGCTCCTTGTTCGTGGAGGGGGACTTTATCTGAGCAAAGGTACCGGGTTAACAGAGGATTTTGAAGAAGTTCCAGTCCAAAGCCGGGGTTTTGGCATTCTTGATGTCGGGTACCGATCAAAGGATGAGGCTTGGGCAGCCGGGGGAAGTGGGATTTTACTGCAGACTACCAATGGTGGCAAGACATGGACCCGTGACAAAGCAGCGGACAATATTGCAGCCAATCTATACTCTGTAAAGTTTATTGATGACAAAAAAGGATTTGTGCTGGGGAATGACGGGGTCTTGCTTCGGTTTAAGAATGGTGCTTTTGCAATTTTGTACTGGTGA

Protein Analysis

417

Amino Acids

45.62

Weight (kDa)

7.81

Isoelectric Point (pI)

33.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSII_BNR PF14870 86 - 406 1.9e-124 Photosynthesis system II assembly factor YCF48
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 299
Acc65I GGTACC 2 cut(s) 962, 1032
AccB1I GGYRCC 2 cut(s) 962, 1032
AccII CGCG 2 cut(s) 257, 813
AccIII TCCGGA 2 cut(s) 99, 530
AclWI GGATC 4 cut(s) 219, 232, 245, 258
AcoI YGGCCR 2 cut(s) 237, 841
AcsI RAATTY 2 cut(s) 74, 885
AcuI CTGAAG 1 cut(s) 450
AfaI GTAC 5 cut(s) 231, 327, 964, 1034, 1244
AfiI CCNNNNNNNGG 4 cut(s) 221, 344, 1006, 1042
AgsI TTSAA 4 cut(s) 457, 472, 890, 986
AjnI CCWGG 3 cut(s) 362, 571, 838
AluBI AGCT 6 cut(s) 125, 428, 468, 540, 561, 568
AluI AGCT 6 cut(s) 125, 428, 468, 540, 561, 568
Alw26I GTCTC 6 cut(s) 173, 198, 374, 528, 683, 808
AlwI GGATC 4 cut(s) 219, 232, 245, 258
Ama87I CYCGRG 3 cut(s) 120, 296, 329
Aor13HI TCCGGA 2 cut(s) 99, 530
AoxI GGCC 2 cut(s) 237, 841
ApeKI GCWGC 5 cut(s) 677, 856, 1058, 1124, 1139
ApoI RAATTY 2 cut(s) 74, 885
ArsI GACNNNNNNTTYG 2 cut(s) 305, 337
Asp700I GAANNNNTTC 2 cut(s) 718, 990
Asp718I GGTACC 2 cut(s) 962, 1032
AspLEI GCGC 2 cut(s) 190, 259
AspS9I GGNCC 4 cut(s) 102, 334, 360, 1110
AsuC2I CCSGG 5 cut(s) 297, 298, 967, 1007, 1063
AsuHPI GGTGA 5 cut(s) 47, 196, 614, 634, 771
AvaI CYCGRG 3 cut(s) 120, 296, 329
AvaII GGWCC 4 cut(s) 102, 334, 360, 1110
BalI TGGCCA 1 cut(s) 843
BamHI GGATCC 2 cut(s) 224, 250
BanI GGYRCC 2 cut(s) 962, 1032
BbvI GCAGC 5 cut(s) 664, 868, 1070, 1136, 1151
BccI CCATC 5 cut(s) 383, 613, 779, 894, 905
BceAI ACGGC 3 cut(s) 78, 198, 785
BcgI CGANNNNNNTGC 3 cut(s) 35, 151, 185
BciT130I CCWGG 3 cut(s) 364, 573, 840
BciVI GTATCC 1 cut(s) 543
BcnI CCSGG 5 cut(s) 297, 298, 967, 1007, 1063
BcoDI GTCTC 6 cut(s) 173, 198, 374, 528, 683, 808
BfaI CTAG 1 cut(s) 723
BfmI CTRYAG 1 cut(s) 1082
BfoI RGCGCY 1 cut(s) 191
BfuI GTATCC 1 cut(s) 543
BglI GCCNNNNNGGC 1 cut(s) 853
BisI GCNGC 8 cut(s) 186, 215, 678, 811, 857, 1059, 1125, 1140
BlpI GCTNAGC 1 cut(s) 557
BlsI GCNGC 8 cut(s) 187, 216, 679, 812, 858, 1060, 1126, 1141
Bme1390I CCNGG 8 cut(s) 297, 298, 364, 573, 840, 967, 1007, 1063
Bme18I GGWCC 4 cut(s) 102, 334, 360, 1110
BmeT110I CYCGRG 3 cut(s) 120, 296, 329
BmgT120I GGNCC 4 cut(s) 102, 334, 360, 1110
BmiI GGNNCC 9 cut(s) 226, 252, 336, 361, 837, 926, 964, 1034, 1112
BmrFI CCNGG 8 cut(s) 297, 298, 364, 573, 840, 967, 1007, 1063
BpmI CTGGAG 2 cut(s) 594, 691
Bpu1102I GCTNAGC 1 cut(s) 557
BpuEI CTTGAG 1 cut(s) 790
BpuMI CCSGG 5 cut(s) 297, 298, 967, 1007, 1063
BsaJI CCNNGG 8 cut(s) 240, 295, 296, 297, 330, 811, 1006, 1062
BsaWI WCCGGW 2 cut(s) 99, 530
BsaXI ACNNNNNCTCC 2 cut(s) 567, 597
Bsc4I CCNNNNNNNGG 4 cut(s) 221, 344, 1006, 1042
Bse118I RCCGGY 1 cut(s) 235
Bse1I ACTGG 6 cut(s) 604, 674, 757, 857, 995, 1250
Bse3DI GCAATG 1 cut(s) 315
BseAI TCCGGA 2 cut(s) 99, 530
BseBI CCWGG 3 cut(s) 364, 573, 840
BseDI CCNNGG 8 cut(s) 240, 295, 296, 297, 330, 811, 1006, 1062
BseGI GGATG 3 cut(s) 394, 905, 1051
BseLI CCNNNNNNNGG 4 cut(s) 221, 344, 1006, 1042
BseMI GCAATG 1 cut(s) 315
BseMII CTCAG 3 cut(s) 168, 578, 944
BseNI ACTGG 6 cut(s) 604, 674, 757, 857, 995, 1250
BseRI GAGGAG 2 cut(s) 78, 299
BseXI GCAGC 5 cut(s) 664, 868, 1070, 1136, 1151
BseYI CCCAGC 2 cut(s) 540, 1189
BsgI GTGCAG 1 cut(s) 633
Bsh1236I CGCG 2 cut(s) 257, 813
BshFI GGCC 2 cut(s) 239, 843
BshNI GGYRCC 2 cut(s) 962, 1032
BsiHKCI CYCGRG 3 cut(s) 120, 296, 329
BsiSI CCGG 7 cut(s) 100, 236, 297, 531, 966, 1006, 1062
BslFI GGGAC 2 cut(s) 373, 957
BslI CCNNNNNNNGG 4 cut(s) 221, 344, 1006, 1042
BsmAI GTCTC 6 cut(s) 173, 198, 374, 528, 683, 808
BsmBI CGTCTC 3 cut(s) 173, 374, 808
BsmFI GGGAC 2 cut(s) 373, 957
BsmI GAATGC 1 cut(s) 1017
BsnI GGCC 2 cut(s) 239, 843
BsoBI CYCGRG 3 cut(s) 120, 296, 329
Bsp13I TCCGGA 2 cut(s) 99, 530
Bsp143I GATC 3 cut(s) 224, 250, 1037
Bsp1720I GCTNAGC 1 cut(s) 557
BspANI GGCC 2 cut(s) 239, 843
BspCNI CTCAG 3 cut(s) 169, 577, 945
BspEI TCCGGA 2 cut(s) 99, 530
BspFNI CGCG 2 cut(s) 257, 813
BspLI GGNNCC 9 cut(s) 226, 252, 336, 361, 837, 926, 964, 1034, 1112
BspMAI CTGCAG 1 cut(s) 1086
BspPI GGATC 4 cut(s) 219, 232, 245, 258
BspT107I GGYRCC 2 cut(s) 962, 1032
BsrDI GCAATG 1 cut(s) 315
BsrFI RCCGGY 1 cut(s) 235
BsrI ACTGG 6 cut(s) 604, 674, 757, 857, 995, 1250
BssAI RCCGGY 1 cut(s) 235
BssECI CCNNGG 8 cut(s) 240, 295, 296, 297, 330, 811, 1006, 1062
BssMI GATC 3 cut(s) 224, 250, 1037
BssT1I CCWWGG 1 cut(s) 240
Bst2UI CCWGG 3 cut(s) 364, 573, 840
Bst4CI ACNGT 3 cut(s) 347, 694, 718
Bst6I CTCTTC 1 cut(s) 602
BstC8I GCNNGC 3 cut(s) 237, 504, 845
BstDEI CTNAG 4 cut(s) 177, 557, 564, 953
BstDSI CCRYGG 1 cut(s) 811
BstF5I GGATG 3 cut(s) 394, 905, 1051
BstFNI CGCG 2 cut(s) 257, 813
BstH2I RGCGCY 1 cut(s) 191
BstHHI GCGC 2 cut(s) 190, 259
BstKTI GATC 3 cut(s) 227, 253, 1040
BstMAI GTCTC 6 cut(s) 173, 198, 374, 528, 683, 808
BstMBI GATC 3 cut(s) 224, 250, 1037
BstMWI GCNNNNNNNGC 3 cut(s) 844, 853, 1058
BstNI CCWGG 3 cut(s) 364, 573, 840
BstSCI CCNGG 8 cut(s) 295, 296, 362, 571, 838, 965, 1005, 1061
BstSFI CTRYAG 1 cut(s) 1082
BstUI CGCG 2 cut(s) 257, 813
BstV1I GCAGC 5 cut(s) 664, 868, 1070, 1136, 1151
BstX2I RGATCY 2 cut(s) 224, 250
BstYI RGATCY 2 cut(s) 224, 250
BsuI GTATCC 1 cut(s) 543
BsuRI GGCC 2 cut(s) 239, 843
BtgI CCRYGG 1 cut(s) 811
BtsCI GGATG 3 cut(s) 394, 905, 1051
BtsIMutI CAGTG 1 cut(s) 750
Cac8I GCNNGC 3 cut(s) 237, 504, 845
CfoI GCGC 2 cut(s) 190, 259
Cfr10I RCCGGY 1 cut(s) 235
Cfr13I GGNCC 4 cut(s) 102, 334, 360, 1110
Cfr42I CCGCGG 1 cut(s) 814
Cfr9I CCCGGG 1 cut(s) 296
Csp6I GTAC 5 cut(s) 230, 326, 963, 1033, 1243
CviAII CATG 2 cut(s) 895, 1107
CviQI GTAC 5 cut(s) 230, 326, 963, 1033, 1243
DdeI CTNAG 4 cut(s) 177, 557, 564, 953
DpnI GATC 3 cut(s) 226, 252, 1039
DpnII GATC 3 cut(s) 224, 250, 1037
DrdI GACNNNNNNGTC 1 cut(s) 299
DseDI GACNNNNNNGTC 1 cut(s) 299
EaeI YGGCCR 2 cut(s) 237, 841
Eam1104I CTCTTC 1 cut(s) 602
EarI CTCTTC 1 cut(s) 602
EciI GGCGGA 2 cut(s) 260, 408
Eco130I CCWWGG 1 cut(s) 240
Eco47I GGWCC 4 cut(s) 102, 334, 360, 1110
Eco57I CTGAAG 1 cut(s) 450
Eco88I CYCGRG 3 cut(s) 120, 296, 329
EcoO109I RGGNCCY 1 cut(s) 334
EcoRI GAATTC 2 cut(s) 74, 885
EcoRII CCWGG 3 cut(s) 362, 571, 838
EcoT14I CCWWGG 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 240
Esp3I CGTCTC 3 cut(s) 173, 374, 808
FaeI CATG 2 cut(s) 898, 1110
FalI AAGNNNNNCTT 2 cut(s) 267, 299
FaqI GGGAC 2 cut(s) 373, 957
FatI CATG 2 cut(s) 894, 1106
FauI CCCGC 1 cut(s) 262
Fnu4HI GCNGC 8 cut(s) 186, 215, 678, 811, 857, 1059, 1125, 1140
FokI GGATG 3 cut(s) 401, 912, 1058
Fsp4HI GCNGC 8 cut(s) 186, 215, 678, 811, 857, 1059, 1125, 1140
FspBI CTAG 1 cut(s) 723
GlaI GCGC 2 cut(s) 189, 258
GluI GCNGC 8 cut(s) 186, 215, 678, 811, 857, 1059, 1125, 1140
GsaI CCCAGC 2 cut(s) 544, 1193
GsuI CTGGAG 2 cut(s) 594, 691
HaeII RGCGCY 1 cut(s) 191
HaeIII GGCC 2 cut(s) 239, 843
HapII CCGG 7 cut(s) 100, 236, 297, 531, 966, 1006, 1062
HhaI GCGC 2 cut(s) 190, 259
Hin1II CATG 2 cut(s) 898, 1110
Hin6I GCGC 2 cut(s) 188, 257
HinP1I GCGC 2 cut(s) 188, 257
HincII GTYRAC 1 cut(s) 972
HindII GTYRAC 1 cut(s) 972
HindIII AAGCTT 1 cut(s) 466
HinfI GANTC 5 cut(s) 143, 418, 453, 527, 772
HpaI GTTAAC 1 cut(s) 972
HpaII CCGG 7 cut(s) 100, 236, 297, 531, 966, 1006, 1062
HphI GGTGA 5 cut(s) 47, 196, 614, 634, 771
Hpy166II GTNNAC 1 cut(s) 972
Hpy188I TCNGA 6 cut(s) 142, 178, 224, 265, 526, 954
Hpy188III TCNNGA 5 cut(s) 71, 100, 531, 686, 1022
Hpy8I GTNNAC 1 cut(s) 972
Hpy99I CGWCG 1 cut(s) 34
HpyAV CCTTC 4 cut(s) 293, 379, 472, 626
HpyCH4III ACNGT 3 cut(s) 347, 694, 718
HpyF10VI GCNNNNNNNGC 3 cut(s) 844, 853, 1058
HpyF3I CTNAG 4 cut(s) 177, 557, 564, 953
Hsp92II CATG 2 cut(s) 898, 1110
HspAI GCGC 2 cut(s) 188, 257
Kpn2I TCCGGA 2 cut(s) 99, 530
KpnI GGTACC 2 cut(s) 966, 1036
KroI GCCGGC 1 cut(s) 235
KroNI GCCGGC 1 cut(s) 237
KspAI GTTAAC 1 cut(s) 972
KspI CCGCGG 1 cut(s) 814
Kzo9I GATC 3 cut(s) 224, 250, 1037
LmnI GCTCC 2 cut(s) 835, 930
Lsp1109I GCAGC 5 cut(s) 664, 868, 1070, 1136, 1151
MaeI CTAG 1 cut(s) 723
MaeIII GTNAC 4 cut(s) 622, 646, 743, 1115
MalI GATC 3 cut(s) 226, 252, 1039
MboI GATC 3 cut(s) 224, 250, 1037
MboII GAAGA 8 cut(s) 120, 123, 138, 443, 449, 619, 894, 998
MfeI CAATTG 1 cut(s) 873
MflI RGATCY 2 cut(s) 224, 250
MlsI TGGCCA 1 cut(s) 843
MluNI TGGCCA 1 cut(s) 843
MmeI TCCRAC 2 cut(s) 467, 475
Mox20I TGGCCA 1 cut(s) 843
MroI TCCGGA 2 cut(s) 99, 530
MroNI GCCGGC 1 cut(s) 235
MroXI GAANNNNTTC 2 cut(s) 718, 990
MscI TGGCCA 1 cut(s) 843
MseI TTAA 5 cut(s) 444, 708, 762, 971, 1218
Msp20I TGGCCA 1 cut(s) 843
MspA1I CMGCKG 5 cut(s) 217, 428, 540, 813, 1127
MspI CCGG 7 cut(s) 100, 236, 297, 531, 966, 1006, 1062
MspR9I CCNGG 8 cut(s) 297, 298, 364, 573, 840, 967, 1007, 1063
MunI CAATTG 1 cut(s) 873
Mva1269I GAATGC 1 cut(s) 1017
MvaI CCWGG 3 cut(s) 364, 573, 840
MvnI CGCG 2 cut(s) 257, 813
MwoI GCNNNNNNNGC 3 cut(s) 844, 853, 1058
NaeI GCCGGC 1 cut(s) 237
NciI CCSGG 5 cut(s) 297, 298, 967, 1007, 1063
NdeII GATC 3 cut(s) 224, 250, 1037
NgoMIV GCCGGC 1 cut(s) 235
NlaIII CATG 2 cut(s) 898, 1110
NlaIV GGNNCC 9 cut(s) 226, 252, 336, 361, 837, 926, 964, 1034, 1112
NmuCI GTSAC 3 cut(s) 622, 646, 1115
PaeR7I CTCGAG 1 cut(s) 120
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PctI GAATGC 1 cut(s) 1017
PdiI GCCGGC 1 cut(s) 237
PdmI GAANNNNTTC 2 cut(s) 718, 990
PfeI GAWTC 5 cut(s) 143, 418, 453, 527, 772
PflFI GACNNNGTC 1 cut(s) 1202
PfoI TCCNGGA 1 cut(s) 571
PkrI GCNGC 8 cut(s) 187, 216, 679, 812, 858, 1060, 1126, 1141
PpuMI RGGWCCY 1 cut(s) 334
Psp5II RGGWCCY 1 cut(s) 334
Psp6I CCWGG 3 cut(s) 362, 571, 838
PspFI CCCAGC 2 cut(s) 540, 1189
PspGI CCWGG 3 cut(s) 362, 571, 838
PspN4I GGNNCC 9 cut(s) 226, 252, 336, 361, 837, 926, 964, 1034, 1112
PspPI GGNCC 4 cut(s) 102, 334, 360, 1110
PspPPI RGGWCCY 1 cut(s) 334
PspXI VCTCGAGB 1 cut(s) 120
PstI CTGCAG 1 cut(s) 1086
PsuI RGATCY 2 cut(s) 224, 250
PsyI GACNNNGTC 1 cut(s) 1202
PvuII CAGCTG 2 cut(s) 428, 540
RsaI GTAC 5 cut(s) 231, 327, 964, 1034, 1244
RsaNI GTAC 5 cut(s) 230, 326, 963, 1033, 1243
SacII CCGCGG 1 cut(s) 814
SaqAI TTAA 5 cut(s) 444, 708, 762, 971, 1218
SatI GCNGC 8 cut(s) 186, 215, 678, 811, 857, 1059, 1125, 1140
Sau3AI GATC 3 cut(s) 224, 250, 1037
Sau96I GGNCC 4 cut(s) 102, 334, 360, 1110
ScrFI CCNGG 8 cut(s) 297, 298, 364, 573, 840, 967, 1007, 1063
SfcI CTRYAG 1 cut(s) 1082
Sfr274I CTCGAG 1 cut(s) 120
Sfr303I CCGCGG 1 cut(s) 814
SgrBI CCGCGG 1 cut(s) 814
SinI GGWCC 4 cut(s) 102, 334, 360, 1110
SlaI CTCGAG 1 cut(s) 120
SmaI CCCGGG 1 cut(s) 298
SmlI CTYRAG 2 cut(s) 120, 805
SmoI CTYRAG 2 cut(s) 120, 805
SspI AATATT 1 cut(s) 1135
SspMI CTAG 1 cut(s) 723
StyD4I CCNGG 8 cut(s) 295, 296, 362, 571, 838, 965, 1005, 1061
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 3 cut(s) 347, 694, 718
TaqI TCGA 5 cut(s) 72, 121, 291, 312, 416
TatI WGTACW 1 cut(s) 1242
TauI GCSGC 3 cut(s) 188, 217, 813
TfiI GAWTC 5 cut(s) 143, 418, 453, 527, 772
Tru1I TTAA 5 cut(s) 444, 708, 762, 971, 1218
Tru9I TTAA 5 cut(s) 444, 708, 762, 971, 1218
TscAI CASTG 1 cut(s) 757
TseFI GTSAC 3 cut(s) 622, 646, 1115
TseI GCWGC 5 cut(s) 677, 856, 1058, 1124, 1139
Tsp45I GTSAC 3 cut(s) 622, 646, 1115
TspDTI ATGAA 2 cut(s) 17, 450
TspGWI ACGGA 3 cut(s) 47, 217, 411
TspMI CCCGGG 1 cut(s) 296
TspRI CASTG 1 cut(s) 757
Tth111I GACNNNGTC 1 cut(s) 1202
VpaK11BI GGWCC 4 cut(s) 102, 334, 360, 1110
XapI RAATTY 2 cut(s) 74, 885
XhoI CTCGAG 1 cut(s) 120
XmaI CCCGGG 1 cut(s) 296
XmnI GAANNNNTTC 2 cut(s) 718, 990
XspI CTAG 1 cut(s) 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.