AT5G23300

Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
7847587 .. 7850404
2818 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G23300.1

Sequence Viewer

Length: 1383 bp
ATGGCCGGAAGGGCTGCGACGTCGTCGGCGAAATGGGCGAGAGAGTTTTTGTTCAGAAGGGTTTCGTCTAATCCTCTTGGAGCTACCCGTAACTGTTCTTCGGTTCCTGGAGCTTCTTCTGCACCGAAAGTCCCTCATTTTTCCAAGAGAGGAAGGATATTGACAGGAGCTACCATTGGTCTGGCCATAGCTGGAGGAGCTTATGTTAGTACTGCAGATGAAGCAACCTTCTGTGGGTGGCTATTCAACGCAACAAAGGTTGTGAATCCTTTCTTTGCTCTTCTGGATGCTGAGTTTGCGCATAAGCTGGCTGTTTCAGCTGCAGCTCGCGGGTGGGTACCTAGAGAAAAGAGGCCTGATCCAGCAATCTTGGGACTTGAAGTTTGGGGAAGGAAATTCTCAAACCCAATTGGGCTTGCTGCTGGATTTGACAAAAACGCTGAGGCTACTGAGGGACTGCTAGGGATGGGATTTGGCTTTGTTGAGGTAGGCTCTGTAACTCCTGTTCCACAAGAAGGCAATCCGAAACCACGTATCTTCAGACTAAGCCAAGAAGGAGCTATTATCAATAGGTGTGGATTTAATAGCGAAGGGATTGTTGTCGTTGCAAAGCGGTTGGGTGCTCAACATGGTAAAAGAATGTTGGCTGAAACATCAGCTACTTCGTCATCTCCAAGTGATGATGTAAAACCAGGGGGAAAATCTGGACCTGGTATTCTTGGGGTCAACCTTGGAAAGAACAAGACGAGTGAGGATGCTGCTGCTGACTATGTCCAAGGAGTTCATAACTTATCCCAGTATGCTGATTACTTGGTGATCAATGTTTCATCACCCAATACTGCAGGACTGCGCATGCTTCAAGGAAGGAAACAGTTGAAGGACCTTGTAAAGAAGGTTCAAGCTGCTCGGGATGAGATGCAATGGGGTGATGAAGGTCCTCCTCCTCTTCTTGTGAAGATTGCTCCTGATCTGTCCAGAGGAGAGCTTGAAGATATTGCAGCGGTGGCTCTTGCTCTGCACTTGGATGGGCTGATCATATCAAATACAACAGTCTCAAGGCCTGATGCTGTAAGCAACAACCCCGTGGCAACAGAAACAGGTGGTTTGAGCGGGAAACCGCTCTTTGCTCTCTCCACCAACATGTTGAGAGATATGTACACTTTGACACGAGGAAAGATTCCATTGATAGGCTGTGGCGGGGTTAGTAGTGGTGAGGATGCTTACAAGAAAATAAGAGCTGGAGCTACTCTTGTTCAGCTGTACACGGGATTTGCCTATGGAGGACCTGCCCTCATCCCACAAATAAAGGAGGAACTGGTGAAATGCTTAGAAAGGGATGGCTTCAAGTCGATCCATGAAGCAATTGGTGCTGATCACAGATGA

Protein Analysis

460

Amino Acids

48.55

Weight (kDa)

9.29

Isoelectric Point (pI)

29.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHO_dh PF01180 125 - 443 6.5e-89 Dihydroorotate dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 23
Acc16I TGCGCA 2 cut(s) 300, 851
Acc36I ACCTGC 1 cut(s) 1294
Acc65I GGTACC 1 cut(s) 337
AccB1I GGYRCC 1 cut(s) 337
AccBSI CCGCTC 2 cut(s) 1110, 1120
AccII CGCG 1 cut(s) 330
AciI CCGC 6 cut(s) 330, 613, 1001, 1110, 1118, 1197
AclWI GGATC 2 cut(s) 353, 1345
AcoI YGGCCR 2 cut(s) 3, 183
AcsI RAATTY 1 cut(s) 395
AcuI CTGAAG 1 cut(s) 523
AcyI GRCGYC 1 cut(s) 20
AfaI GTAC 4 cut(s) 211, 339, 1157, 1262
AfiI CCNNNNNNNGG 3 cut(s) 234, 515, 1187
AflIII ACRYGT 1 cut(s) 1140
AgsI TTSAA 7 cut(s) 247, 380, 860, 877, 899, 989, 1345
AjnI CCWGG 3 cut(s) 106, 691, 709
Alw21I GWGCWC 1 cut(s) 625
Alw26I GTCTC 1 cut(s) 1057
AlwI GGATC 2 cut(s) 353, 1345
Ama87I CYCGRG 1 cut(s) 906
AoxI GGCC 4 cut(s) 3, 183, 353, 1058
ApeKI GCWGC 8 cut(s) 14, 320, 323, 419, 758, 761, 902, 998
ApoI RAATTY 1 cut(s) 395
ArsI GACNNNNNNTTYG 2 cut(s) 366, 398
Asp700I GAANNNNTTC 2 cut(s) 61, 269
Asp718I GGTACC 1 cut(s) 337
AspLEI GCGC 2 cut(s) 301, 852
AspS9I GGNCC 4 cut(s) 707, 880, 935, 1283
AsuHPI GGTGA 5 cut(s) 822, 826, 938, 1223, 1330
AvaI CYCGRG 1 cut(s) 906
AvaII GGWCC 4 cut(s) 707, 880, 935, 1283
BalI TGGCCA 1 cut(s) 185
BanI GGYRCC 1 cut(s) 337
BarI GAAGNNNNNNTAC 2 cut(s) 82, 114
BauI CACGAG 1 cut(s) 1167
Bbv12I GWGCWC 1 cut(s) 625
BbvCI CCTCAGC 1 cut(s) 441
BbvI GCAGC 7 cut(s) 307, 335, 406, 745, 748, 889, 1010
BccI CCATC 3 cut(s) 460, 1019, 1331
BciT130I CCWGG 3 cut(s) 108, 693, 711
BclI TGATCA 3 cut(s) 816, 1032, 1372
BcoDI GTCTC 1 cut(s) 1057
BfaI CTAG 2 cut(s) 342, 461
BfmI CTRYAG 3 cut(s) 213, 321, 840
BfuAI ACCTGC 1 cut(s) 1294
BglI GCCNNNNNGGC 1 cut(s) 11
BisI GCNGC 8 cut(s) 15, 321, 324, 420, 759, 762, 903, 999
BlsI GCNGC 8 cut(s) 16, 322, 325, 421, 760, 763, 904, 1000
BmcAI AGTACT 1 cut(s) 211
Bme1390I CCNGG 3 cut(s) 108, 693, 711
Bme18I GGWCC 4 cut(s) 707, 880, 935, 1283
BmeT110I CYCGRG 1 cut(s) 906
BmgT120I GGNCC 4 cut(s) 707, 880, 935, 1283
BmiI GGNNCC 2 cut(s) 105, 339
BmrFI CCNGG 3 cut(s) 108, 693, 711
BmrI ACTGGG 1 cut(s) 790
BmsI GCATC 5 cut(s) 277, 745, 906, 1054, 1207
BmuI ACTGGG 1 cut(s) 790
BplI GAGNNNNNCTC 2 cut(s) 476, 508
BpmI CTGGAG 3 cut(s) 129, 213, 1260
Bpu10I CCTNAGC 1 cut(s) 441
BpuEI CTTGAG 1 cut(s) 1039
BsaAI YACGTR 1 cut(s) 533
BsaHI GRCGYC 1 cut(s) 20
BsaJI CCNNGG 4 cut(s) 692, 730, 775, 1083
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bsc4I CCNNNNNNNGG 3 cut(s) 234, 515, 1187
Bse1I ACTGG 2 cut(s) 796, 1320
Bse3DI GCAATG 1 cut(s) 926
BseBI CCWGG 3 cut(s) 108, 693, 711
BseDI CCNNGG 4 cut(s) 692, 730, 775, 1083
BseGI GGATG 8 cut(s) 292, 471, 760, 916, 1030, 1222, 1293, 1342
BseLI CCNNNNNNNGG 3 cut(s) 234, 515, 1187
BseMI GCAATG 1 cut(s) 926
BseMII CTCAG 3 cut(s) 282, 432, 441
BseNI ACTGG 2 cut(s) 796, 1320
BseRI GAGGAG 4 cut(s) 210, 930, 933, 993
BseXI GCAGC 7 cut(s) 307, 335, 406, 745, 748, 889, 1010
BsgI GTGCAG 2 cut(s) 105, 1001
Bsh1236I CGCG 1 cut(s) 330
BshFI GGCC 4 cut(s) 5, 185, 355, 1060
BshNI GGYRCC 1 cut(s) 337
BsiHKAI GWGCWC 1 cut(s) 625
BsiHKCI CYCGRG 1 cut(s) 906
BsiSI CCGG 1 cut(s) 6
BslFI GGGAC 3 cut(s) 116, 387, 468
BslI CCNNNNNNNGG 3 cut(s) 234, 515, 1187
BsmAI GTCTC 1 cut(s) 1057
BsmFI GGGAC 3 cut(s) 116, 387, 468
BsnI GGCC 4 cut(s) 5, 185, 355, 1060
BsoBI CYCGRG 1 cut(s) 906
Bsp1286I GDGCHC 1 cut(s) 625
Bsp1407I TGTACA 2 cut(s) 1155, 1260
Bsp143I GATC 6 cut(s) 358, 816, 967, 1032, 1350, 1372
BspACI CCGC 6 cut(s) 330, 613, 1001, 1110, 1118, 1197
BspANI GGCC 4 cut(s) 5, 185, 355, 1060
BspCNI CTCAG 3 cut(s) 283, 433, 442
BspFNI CGCG 1 cut(s) 330
BspLI GGNNCC 2 cut(s) 105, 339
BspMAI CTGCAG 3 cut(s) 217, 325, 844
BspMI ACCTGC 1 cut(s) 1294
BspPI GGATC 2 cut(s) 353, 1345
BspQI GCTCTTC 1 cut(s) 285
BspT107I GGYRCC 1 cut(s) 337
BsrBI CCGCTC 2 cut(s) 1110, 1120
BsrDI GCAATG 1 cut(s) 926
BsrGI TGTACA 2 cut(s) 1155, 1260
BsrI ACTGG 2 cut(s) 796, 1320
BssECI CCNNGG 4 cut(s) 692, 730, 775, 1083
BssMI GATC 6 cut(s) 358, 816, 967, 1032, 1350, 1372
BssNI GRCGYC 1 cut(s) 20
BssSI CACGAG 1 cut(s) 1167
BssT1I CCWWGG 2 cut(s) 730, 775
Bst2BI CACGAG 1 cut(s) 1167
Bst2UI CCWGG 3 cut(s) 108, 693, 711
Bst4CI ACNGT 3 cut(s) 95, 873, 1051
Bst6I CTCTTC 2 cut(s) 285, 951
BstACI GRCGYC 1 cut(s) 20
BstAPI GCANNNNNTGC 1 cut(s) 1367
BstAUI TGTACA 2 cut(s) 1155, 1260
BstBAI YACGTR 1 cut(s) 533
BstC8I GCNNGC 4 cut(s) 309, 328, 417, 854
BstDEI CTNAG 5 cut(s) 291, 441, 450, 545, 1327
BstDSI CCRYGG 1 cut(s) 1083
BstF5I GGATG 8 cut(s) 292, 471, 760, 916, 1030, 1222, 1293, 1342
BstFNI CGCG 1 cut(s) 330
BstHHI GCGC 2 cut(s) 301, 852
BstKTI GATC 6 cut(s) 361, 819, 970, 1035, 1353, 1375
BstMAI GTCTC 1 cut(s) 1057
BstMBI GATC 6 cut(s) 358, 816, 967, 1032, 1350, 1372
BstMWI GCNNNNNNNGC 9 cut(s) 11, 35, 119, 197, 221, 296, 317, 1004, 1367
BstNI CCWGG 3 cut(s) 108, 693, 711
BstNSI RCATGY 2 cut(s) 856, 1144
BstSCI CCNGG 3 cut(s) 106, 691, 709
BstSFI CTRYAG 3 cut(s) 213, 321, 840
BstUI CGCG 1 cut(s) 330
BstV1I GCAGC 7 cut(s) 307, 335, 406, 745, 748, 889, 1010
BstXI CCANNNNNNTGG 1 cut(s) 181
BsuRI GGCC 4 cut(s) 5, 185, 355, 1060
BtgI CCRYGG 1 cut(s) 1083
BtsCI GGATG 8 cut(s) 292, 471, 760, 916, 1030, 1222, 1293, 1342
BveI ACCTGC 1 cut(s) 1294
Cac8I GCNNGC 4 cut(s) 309, 328, 417, 854
CfoI GCGC 2 cut(s) 301, 852
Cfr13I GGNCC 4 cut(s) 707, 880, 935, 1283
CsiI ACCWGGT 1 cut(s) 709
Csp6I GTAC 4 cut(s) 210, 338, 1156, 1261
CspCI CAANNNNNGTGG 2 cut(s) 556, 591
CviAII CATG 4 cut(s) 629, 853, 1141, 1355
CviQI GTAC 4 cut(s) 210, 338, 1156, 1261
DdeI CTNAG 5 cut(s) 291, 441, 450, 545, 1327
DpnI GATC 6 cut(s) 360, 818, 969, 1034, 1352, 1374
DpnII GATC 6 cut(s) 358, 816, 967, 1032, 1350, 1372
EaeI YGGCCR 2 cut(s) 3, 183
Eam1104I CTCTTC 2 cut(s) 285, 951
EarI CTCTTC 2 cut(s) 285, 951
Eco130I CCWWGG 2 cut(s) 730, 775
Eco147I AGGCCT 2 cut(s) 355, 1060
Eco47I GGWCC 4 cut(s) 707, 880, 935, 1283
Eco57I CTGAAG 1 cut(s) 523
Eco88I CYCGRG 1 cut(s) 906
EcoO109I RGGNCCY 3 cut(s) 880, 935, 1283
EcoRII CCWGG 3 cut(s) 106, 691, 709
EcoT14I CCWWGG 2 cut(s) 730, 775
ErhI CCWWGG 2 cut(s) 730, 775
FaeI CATG 4 cut(s) 632, 856, 1144, 1358
FaqI GGGAC 3 cut(s) 116, 387, 468
FatI CATG 4 cut(s) 628, 852, 1140, 1354
FauI CCCGC 3 cut(s) 323, 1103, 1190
FbaI TGATCA 3 cut(s) 816, 1032, 1372
Fnu4HI GCNGC 8 cut(s) 15, 321, 324, 420, 759, 762, 903, 999
FokI GGATG 8 cut(s) 299, 478, 767, 923, 1037, 1229, 1280, 1349
Fsp4HI GCNGC 8 cut(s) 15, 321, 324, 420, 759, 762, 903, 999
FspBI CTAG 2 cut(s) 342, 461
FspI TGCGCA 2 cut(s) 300, 851
GlaI GCGC 2 cut(s) 300, 851
GluI GCNGC 8 cut(s) 15, 321, 324, 420, 759, 762, 903, 999
GsuI CTGGAG 3 cut(s) 129, 213, 1260
HaeIII GGCC 4 cut(s) 5, 185, 355, 1060
HapII CCGG 1 cut(s) 6
HhaI GCGC 2 cut(s) 301, 852
Hin1I GRCGYC 1 cut(s) 20
Hin1II CATG 4 cut(s) 632, 856, 1144, 1358
Hin6I GCGC 2 cut(s) 299, 850
HinP1I GCGC 2 cut(s) 299, 850
HincII GTYRAC 1 cut(s) 727
HindII GTYRAC 1 cut(s) 727
HinfI GANTC 2 cut(s) 265, 1177
HpaII CCGG 1 cut(s) 6
HphI GGTGA 5 cut(s) 822, 826, 938, 1223, 1330
Hpy166II GTNNAC 3 cut(s) 727, 1158, 1263
Hpy188I TCNGA 3 cut(s) 56, 525, 542
Hpy188III TCNNGA 5 cut(s) 284, 705, 908, 965, 975
Hpy8I GTNNAC 3 cut(s) 727, 1158, 1263
Hpy99I CGWCG 3 cut(s) 22, 25, 28
HpyCH4III ACNGT 3 cut(s) 95, 873, 1051
HpyCH4IV ACGT 2 cut(s) 20, 532
HpyCH4V TGCA 8 cut(s) 122, 215, 323, 608, 842, 919, 998, 1018
HpyF10VI GCNNNNNNNGC 9 cut(s) 11, 35, 119, 197, 221, 296, 317, 1004, 1367
HpyF3I CTNAG 5 cut(s) 291, 441, 450, 545, 1327
HpySE526I ACGT 2 cut(s) 20, 532
Hsp92I GRCGYC 1 cut(s) 20
Hsp92II CATG 4 cut(s) 632, 856, 1144, 1358
HspAI GCGC 2 cut(s) 299, 850
KpnI GGTACC 1 cut(s) 341
Ksp22I TGATCA 3 cut(s) 816, 1032, 1372
Kzo9I GATC 6 cut(s) 358, 816, 967, 1032, 1350, 1372
LguI GCTCTTC 1 cut(s) 285
LmnI GCTCC 7 cut(s) 80, 110, 167, 197, 557, 967, 1241
Lsp1109I GCAGC 7 cut(s) 307, 335, 406, 745, 748, 889, 1010
LweI GCATC 5 cut(s) 277, 745, 906, 1054, 1207
MabI ACCWGGT 1 cut(s) 709
MaeI CTAG 2 cut(s) 342, 461
MaeII ACGT 2 cut(s) 20, 532
MaeIII GTNAC 2 cut(s) 89, 496
MalI GATC 6 cut(s) 360, 818, 969, 1034, 1352, 1374
MbiI CCGCTC 2 cut(s) 1110, 1120
MboI GATC 6 cut(s) 358, 816, 967, 1032, 1350, 1372
MboII GAAGA 7 cut(s) 90, 108, 272, 529, 938, 967, 1001
MfeI CAATTG 2 cut(s) 408, 1362
MhlI GDGCHC 1 cut(s) 625
MlsI TGGCCA 1 cut(s) 185
MluCI AATT 3 cut(s) 395, 408, 1362
MluNI TGGCCA 1 cut(s) 185
Mox20I TGGCCA 1 cut(s) 185
MroXI GAANNNNTTC 2 cut(s) 61, 269
MscI TGGCCA 1 cut(s) 185
MseI TTAA 1 cut(s) 582
MslI CAYNNNNRTG 2 cut(s) 1023, 1139
Msp20I TGGCCA 1 cut(s) 185
MspA1I CMGCKG 3 cut(s) 320, 1001, 1258
MspI CCGG 1 cut(s) 6
MspR9I CCNGG 3 cut(s) 108, 693, 711
MunI CAATTG 2 cut(s) 408, 1362
MvaI CCWGG 3 cut(s) 108, 693, 711
MvnI CGCG 1 cut(s) 330
MwoI GCNNNNNNNGC 9 cut(s) 11, 35, 119, 197, 221, 296, 317, 1004, 1367
NdeII GATC 6 cut(s) 358, 816, 967, 1032, 1350, 1372
NlaIII CATG 4 cut(s) 632, 856, 1144, 1358
NlaIV GGNNCC 2 cut(s) 105, 339
NsbI TGCGCA 2 cut(s) 300, 851
NspI RCATGY 2 cut(s) 856, 1144
PaeI GCATGC 1 cut(s) 856
PceI AGGCCT 2 cut(s) 355, 1060
PciI ACATGT 1 cut(s) 1140
PciSI GCTCTTC 1 cut(s) 285
PcsI WCGNNNNNNNCGW 1 cut(s) 26
PdmI GAANNNNTTC 2 cut(s) 61, 269
PfeI GAWTC 2 cut(s) 265, 1177
PflFI GACNNNGTC 2 cut(s) 22, 770
PfoI TCCNGGA 1 cut(s) 106
PkrI GCNGC 8 cut(s) 16, 322, 325, 421, 760, 763, 904, 1000
Ppu21I YACGTR 1 cut(s) 533
PpuMI RGGWCCY 3 cut(s) 880, 935, 1283
PscI ACATGT 1 cut(s) 1140
Psp5II RGGWCCY 3 cut(s) 880, 935, 1283
Psp6I CCWGG 3 cut(s) 106, 691, 709
PspGI CCWGG 3 cut(s) 106, 691, 709
PspN4I GGNNCC 2 cut(s) 105, 339
PspPI GGNCC 4 cut(s) 707, 880, 935, 1283
PspPPI RGGWCCY 3 cut(s) 880, 935, 1283
PsrI GAACNNNNNNTAC 4 cut(s) 489, 521, 879, 911
PstI CTGCAG 3 cut(s) 217, 325, 844
PsyI GACNNNGTC 2 cut(s) 22, 770
PvuII CAGCTG 2 cut(s) 320, 1258
RsaI GTAC 4 cut(s) 211, 339, 1157, 1262
RsaNI GTAC 4 cut(s) 210, 338, 1156, 1261
RseI CAYNNNNRTG 2 cut(s) 1023, 1139
SapI GCTCTTC 1 cut(s) 285
SaqAI TTAA 1 cut(s) 582
SatI GCNGC 8 cut(s) 15, 321, 324, 420, 759, 762, 903, 999
Sau3AI GATC 6 cut(s) 358, 816, 967, 1032, 1350, 1372
Sau96I GGNCC 4 cut(s) 707, 880, 935, 1283
ScaI AGTACT 1 cut(s) 211
ScrFI CCNGG 3 cut(s) 108, 693, 711
SduI GDGCHC 1 cut(s) 625
SexAI ACCWGGT 1 cut(s) 709
SfaNI GCATC 5 cut(s) 277, 745, 906, 1054, 1207
SfcI CTRYAG 3 cut(s) 213, 321, 840
SinI GGWCC 4 cut(s) 707, 880, 935, 1283
SmiMI CAYNNNNRTG 2 cut(s) 1023, 1139
SmlI CTYRAG 1 cut(s) 1054
SmoI CTYRAG 1 cut(s) 1054
SphI GCATGC 1 cut(s) 856
Sse9I AATT 3 cut(s) 395, 408, 1362
SseBI AGGCCT 2 cut(s) 355, 1060
SsiI CCGC 6 cut(s) 330, 613, 1001, 1110, 1118, 1197
SspMI CTAG 2 cut(s) 342, 461
StuI AGGCCT 2 cut(s) 355, 1060
StyD4I CCNGG 3 cut(s) 106, 691, 709
StyI CCWWGG 2 cut(s) 730, 775
TaaI ACNGT 3 cut(s) 95, 873, 1051
TaiI ACGT 2 cut(s) 23, 535
TaqI TCGA 1 cut(s) 1349
TasI AATT 3 cut(s) 395, 408, 1362
TatI WGTACW 3 cut(s) 209, 1155, 1260
TfiI GAWTC 2 cut(s) 265, 1177
Tru1I TTAA 1 cut(s) 582
Tru9I TTAA 1 cut(s) 582
TseI GCWGC 8 cut(s) 14, 320, 323, 419, 758, 761, 902, 998
TspDTI ATGAA 5 cut(s) 234, 773, 816, 945, 1371
Tth111I GACNNNGTC 2 cut(s) 22, 770
VpaK11BI GGWCC 4 cut(s) 707, 880, 935, 1283
XapI RAATTY 1 cut(s) 395
XceI RCATGY 2 cut(s) 856, 1144
XcmI CCANNNNNNNNNTGG 1 cut(s) 1361
XmnI GAANNNNTTC 2 cut(s) 61, 269
XspI CTAG 2 cut(s) 342, 461
ZraI GACGTC 1 cut(s) 21
ZrmI AGTACT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.