FvH4_3g07800

Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
4588811 .. 4594434
5624 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g07800.t1

Sequence Viewer

Length: 1383 bp
ATGGCGGCAAGGGCCTCAAGAAAACTACTCAGAGACTTTTTGCTGAGAAGAACAGCATGCACAGCTCCAATTGGGATTGGAGCTGCCAGGCATTCTTCCTCTGCTGCCCCAAAACCTCCCAAGATTCCAAAGATCCCTCATTTTTCCAAGAGGGGGCTATTTACTGCAGCCACATTGGGGTTGGTTATAGCTGGAGGAGCTTATGCAAGCACAGTTGATGAAGCAACTTTCTGTGGATGGCTATTCTCAGCTACCAAACTTGTCAATCCAATCTTTGCTCTTCTGGATCCAGAGGTTGCTCATAGACTGGGAGTCTCAGCCGCAGCACGTGGTTGGGTTCCTAGGGAGAAGAGACCAGATCCACCAAATTTAGGCCTAGAAGTTTGGGGAAGGAAGTTCTCAAACCCCATAGGTCTTGCTGCTGGCTTTGATAAGAATGCTGAGGCTGTTGATGGCTTACTTGGTTTAGGATTTGGCTTTGTAGAGATTGGTTCTGTAACCCCTATTCCACAGGAGGGCAATCCAAAGCCTCGTGTCTTCAGATTACGTGATGAAGGGGCTATCATCAATCGCTATGGCTTTAATAGTGAAGGAATTATTGCTGTTGCAAAGCGGTTGGGAATCCAGCATGGTAAGAGGATGTTGGATGAAACTTCAAGTACTTCATCTCCATCGGCTGATGAAGCCAAAGGTGGAGGAAAATCTGGCCCTGGCATACTGGGCGTGAATCTTGGAAAAAATAAGACAAGTGAAGATGCTGCTTCAGATTATGTACAAGGGGTTCATTCCTTGTCCCAGTATGCTGATTACTTGGTGATTAATGTTTCATCACCCAACACCCCAGGGTTACGTATGCTTCAAGGAAGAAAGGAGTTAAAGGACCTTGTGAAGAAGGTACAAGCTGCTCGTGATGAAATGCAATGGGGGGAAGAGGGCCCTCCTCCATTGCTGGTGAAAATTGCTCCGGATTTGTCTAAAGAAGACCTTGAAGATATTGCTGCAGTGGCACGTACCCTTCACTTGGACGGGTTGATTATATCAAACACAACTGTTTCAAGACCAGATACTGTGAGTAAAAACTCAGTGGCTTCTGAAGCTGGTGGCTTGAGTGGGAAACCACTCTTTGATATGTCTACCAGCCTATTAAAGGAAATGTACATCTTGACTAGGGGGAAGATTCCTTTAATAGGGTGTGGAGGCATTTTCAGTGGCGAGGATGCTTATCGAAAAATACGAGCTGGAGCAACTCTTGTTCAGCTTTATACAGGCTTTGCCTATGGGGGGCCTGCTCTCATTCCCCAGATAAAGGCTGAATTGTCTGAATGCTTAGAAAGAGATGGCTTCAAAACTGTTATTGAAGCAGTTGGTGCAGATTGCAGATGA

Protein Analysis

461

Amino Acids

48.87

Weight (kDa)

9.18

Isoelectric Point (pI)

30.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHO_dh PF01180 126 - 443 1.4e-88 Dihydroorotate dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1133
AccIII TCCGGA 1 cut(s) 964
AciI CCGC 3 cut(s) 5, 321, 613
AclWI GGATC 4 cut(s) 127, 281, 294, 353
AcsI RAATTY 1 cut(s) 367
AcuI CTGAAG 3 cut(s) 523, 747, 1113
AcvI CACGTG 1 cut(s) 329
AfaI GTAC 5 cut(s) 661, 774, 897, 1012, 1157
AfiI CCNNNNNNNGG 9 cut(s) 153, 177, 371, 515, 1021, 1147, 1187, 1281, 1306
AgsI TTSAA 6 cut(s) 657, 860, 989, 1056, 1345, 1358
AhdI GACNNNNNGTC 1 cut(s) 311
AjnI CCWGG 3 cut(s) 86, 709, 841
AluBI AGCT 9 cut(s) 65, 83, 191, 200, 251, 902, 1097, 1238, 1258
AluI AGCT 9 cut(s) 65, 83, 191, 200, 251, 902, 1097, 1238, 1258
Alw26I GTCTC 3 cut(s) 27, 319, 346
AlwI GGATC 4 cut(s) 127, 281, 294, 353
AlwNI CAGNNNCTG 1 cut(s) 1067
Aor13HI TCCGGA 1 cut(s) 964
AoxI GGCC 5 cut(s) 12, 373, 706, 934, 1283
ApaI GGGCCC 1 cut(s) 938
ApeKI GCWGC 8 cut(s) 83, 104, 167, 323, 419, 758, 902, 998
ApoI RAATTY 1 cut(s) 367
AseI ATTAAT 1 cut(s) 819
AspA2I CCTAGG 1 cut(s) 341
AspS9I GGNCC 6 cut(s) 12, 707, 880, 934, 935, 1283
AsuHPI GGTGA 3 cut(s) 822, 826, 964
AvaII GGWCC 1 cut(s) 880
AvrII CCTAGG 1 cut(s) 341
BaeGI GKGCMC 1 cut(s) 938
BamHI GGATCC 1 cut(s) 286
BanII GRGCYC 1 cut(s) 938
BauI CACGAG 2 cut(s) 531, 906
BbrPI CACGTG 1 cut(s) 329
BbsI GAAGAC 2 cut(s) 529, 987
BbvCI CCTCAGC 1 cut(s) 441
BbvI GCAGC 8 cut(s) 70, 91, 179, 335, 406, 745, 889, 985
BccI CCATC 4 cut(s) 231, 446, 679, 1331
BciT130I CCWGG 3 cut(s) 88, 711, 843
BcoDI GTCTC 3 cut(s) 27, 319, 346
BfaI CTAG 3 cut(s) 342, 377, 1167
BfmI CTRYAG 2 cut(s) 165, 999
BlnI CCTAGG 1 cut(s) 341
BmcAI AGTACT 1 cut(s) 661
Bme1390I CCNGG 3 cut(s) 88, 711, 843
Bme18I GGWCC 1 cut(s) 880
BmeRI GACNNNNNGTC 1 cut(s) 311
BmgT120I GGNCC 6 cut(s) 12, 707, 880, 934, 935, 1283
BmiI GGNNCC 4 cut(s) 288, 339, 936, 1284
BmrFI CCNGG 3 cut(s) 88, 711, 843
BmrI ACTGGG 3 cut(s) 317, 728, 790
BmsI GCATC 2 cut(s) 745, 1207
BmuI ACTGGG 3 cut(s) 317, 728, 790
BpiI GAAGAC 2 cut(s) 529, 987
BpmI CTGGAG 2 cut(s) 213, 1260
Bpu10I CCTNAGC 1 cut(s) 441
BpuEI CTTGAG 1 cut(s) 1126
BsaAI YACGTR 4 cut(s) 329, 548, 851, 1010
BsaBI GATNNNNATC 1 cut(s) 1221
BsaI GGTCTC 1 cut(s) 346
BsaJI CCNNGG 4 cut(s) 341, 709, 841, 842
BsaWI WCCGGW 1 cut(s) 964
BsaXI ACNNNNNCTCC 2 cut(s) 652, 682
Bsc4I CCNNNNNNNGG 9 cut(s) 153, 177, 371, 515, 1021, 1147, 1187, 1281, 1306
Bse1I ACTGG 3 cut(s) 312, 723, 796
Bse3DI GCAATG 2 cut(s) 926, 944
Bse8I GATNNNNATC 1 cut(s) 1221
BseAI TCCGGA 1 cut(s) 964
BseBI CCWGG 3 cut(s) 88, 711, 843
BseDI CCNNGG 4 cut(s) 341, 709, 841, 842
BseGI GGATG 4 cut(s) 242, 645, 652, 1222
BseJI GATNNNNATC 1 cut(s) 1221
BseLI CCNNNNNNNGG 9 cut(s) 153, 177, 371, 515, 1021, 1147, 1187, 1281, 1306
BseMI GCAATG 2 cut(s) 926, 944
BseMII CTCAG 6 cut(s) 35, 43, 261, 330, 432, 1095
BseNI ACTGG 3 cut(s) 312, 723, 796
BseRI GAGGAG 2 cut(s) 210, 930
BseSI GKGCMC 1 cut(s) 938
BseXI GCAGC 8 cut(s) 70, 91, 179, 335, 406, 745, 889, 985
BshFI GGCC 5 cut(s) 14, 375, 708, 936, 1285
BsiSI CCGG 1 cut(s) 965
BslFI GGGAC 1 cut(s) 778
BslI CCNNNNNNNGG 9 cut(s) 153, 177, 371, 515, 1021, 1147, 1187, 1281, 1306
BsmAI GTCTC 3 cut(s) 27, 319, 346
BsmFI GGGAC 1 cut(s) 778
BsmI GAATGC 3 cut(s) 91, 442, 1328
BsnI GGCC 5 cut(s) 14, 375, 708, 936, 1285
Bso31I GGTCTC 1 cut(s) 346
Bsp120I GGGCCC 1 cut(s) 934
Bsp1286I GDGCHC 1 cut(s) 938
Bsp13I TCCGGA 1 cut(s) 964
Bsp1407I TGTACA 2 cut(s) 772, 1155
Bsp143I GATC 3 cut(s) 132, 286, 358
BspACI CCGC 3 cut(s) 5, 321, 613
BspANI GGCC 5 cut(s) 14, 375, 708, 936, 1285
BspCNI CTCAG 6 cut(s) 36, 42, 260, 329, 433, 1094
BspEI TCCGGA 1 cut(s) 964
BspLI GGNNCC 4 cut(s) 288, 339, 936, 1284
BspMAI CTGCAG 2 cut(s) 169, 1003
BspPI GGATC 4 cut(s) 127, 281, 294, 353
BspQI GCTCTTC 1 cut(s) 285
BspTNI GGTCTC 1 cut(s) 346
BsrDI GCAATG 2 cut(s) 926, 944
BsrGI TGTACA 2 cut(s) 772, 1155
BsrI ACTGG 3 cut(s) 312, 723, 796
BssECI CCNNGG 4 cut(s) 341, 709, 841, 842
BssMI GATC 3 cut(s) 132, 286, 358
BssSI CACGAG 2 cut(s) 531, 906
BssT1I CCWWGG 1 cut(s) 341
Bst2BI CACGAG 2 cut(s) 531, 906
Bst2UI CCWGG 3 cut(s) 88, 711, 843
Bst4CI ACNGT 4 cut(s) 214, 1051, 1069, 1351
Bst6I CTCTTC 3 cut(s) 285, 344, 924
BstAPI GCANNNNNTGC 1 cut(s) 1367
BstAUI TGTACA 2 cut(s) 772, 1155
BstBAI YACGTR 4 cut(s) 329, 548, 851, 1010
BstC8I GCNNGC 4 cut(s) 58, 208, 424, 1287
BstDEI CTNAG 7 cut(s) 29, 44, 247, 316, 441, 1081, 1327
BstENI CCTNNNNNAGG 2 cut(s) 1145, 1185
BstF5I GGATG 4 cut(s) 242, 645, 652, 1222
BstKTI GATC 3 cut(s) 135, 289, 361
BstMAI GTCTC 3 cut(s) 27, 319, 346
BstMBI GATC 3 cut(s) 132, 286, 358
BstMWI GCNNNNNNNGC 8 cut(s) 11, 62, 197, 683, 720, 1004, 1094, 1367
BstNI CCWGG 3 cut(s) 88, 711, 843
BstNSI RCATGY 1 cut(s) 60
BstSCI CCNGG 3 cut(s) 86, 709, 841
BstSFI CTRYAG 2 cut(s) 165, 999
BstSLI GKGCMC 1 cut(s) 938
BstSNI TACGTA 1 cut(s) 851
BstV1I GCAGC 8 cut(s) 70, 91, 179, 335, 406, 745, 889, 985
BstV2I GAAGAC 2 cut(s) 529, 987
BstX2I RGATCY 3 cut(s) 132, 286, 358
BstYI RGATCY 3 cut(s) 132, 286, 358
BsuRI GGCC 5 cut(s) 14, 375, 708, 936, 1285
BtsCI GGATG 4 cut(s) 242, 645, 652, 1222
BtsI GCAGTG 1 cut(s) 1008
BtsIMutI CAGTG 3 cut(s) 1008, 1089, 1213
Cac8I GCNNGC 4 cut(s) 58, 208, 424, 1287
CaiI CAGNNNCTG 1 cut(s) 1067
Cfr13I GGNCC 6 cut(s) 12, 707, 880, 934, 935, 1283
Csp6I GTAC 5 cut(s) 660, 773, 896, 1011, 1156
CviAII CATG 2 cut(s) 57, 629
CviQI GTAC 5 cut(s) 660, 773, 896, 1011, 1156
DdeI CTNAG 7 cut(s) 29, 44, 247, 316, 441, 1081, 1327
DpnI GATC 3 cut(s) 134, 288, 360
DpnII GATC 3 cut(s) 132, 286, 358
DriI GACNNNNNGTC 1 cut(s) 311
Eam1104I CTCTTC 3 cut(s) 285, 344, 924
Eam1105I GACNNNNNGTC 1 cut(s) 311
EarI CTCTTC 3 cut(s) 285, 344, 924
Eco105I TACGTA 1 cut(s) 851
Eco130I CCWWGG 1 cut(s) 341
Eco147I AGGCCT 1 cut(s) 375
Eco24I GRGCYC 1 cut(s) 938
Eco31I GGTCTC 1 cut(s) 346
Eco47I GGWCC 1 cut(s) 880
Eco57I CTGAAG 3 cut(s) 523, 747, 1113
Eco72I CACGTG 1 cut(s) 329
EcoNI CCTNNNNNAGG 2 cut(s) 1145, 1185
EcoO109I RGGNCCY 5 cut(s) 12, 880, 934, 935, 1283
EcoRII CCWGG 3 cut(s) 86, 709, 841
EcoT14I CCWWGG 1 cut(s) 341
EcoT38I GRGCYC 1 cut(s) 938
ErhI CCWWGG 1 cut(s) 341
FaeI CATG 2 cut(s) 60, 632
FalI AAGNNNNNCTT 2 cut(s) 969, 1001
FaqI GGGAC 1 cut(s) 778
FatI CATG 2 cut(s) 56, 628
FblI GTMKAC 1 cut(s) 1133
FokI GGATG 4 cut(s) 249, 652, 659, 1229
FriOI GRGCYC 1 cut(s) 938
FspBI CTAG 3 cut(s) 342, 377, 1167
GsuI CTGGAG 2 cut(s) 213, 1260
HaeIII GGCC 5 cut(s) 14, 375, 708, 936, 1285
HapII CCGG 1 cut(s) 965
Hin1II CATG 2 cut(s) 60, 632
HinfI GANTC 5 cut(s) 124, 312, 621, 727, 1177
HpaII CCGG 1 cut(s) 965
HphI GGTGA 3 cut(s) 822, 826, 964
Hpy166II GTNNAC 1 cut(s) 1134
Hpy188I TCNGA 5 cut(s) 32, 542, 766, 1093, 1321
Hpy188III TCNNGA 7 cut(s) 18, 284, 290, 908, 965, 1056, 1162
Hpy8I GTNNAC 1 cut(s) 1134
HpyAV CCTTC 5 cut(s) 384, 548, 584, 886, 1025
HpyCH4III ACNGT 4 cut(s) 214, 1051, 1069, 1351
HpyCH4IV ACGT 4 cut(s) 328, 547, 850, 1009
HpyCH4V TGCA 8 cut(s) 60, 167, 206, 608, 919, 1001, 1370, 1377
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 62, 197, 683, 720, 1004, 1094, 1367
HpyF3I CTNAG 7 cut(s) 29, 44, 247, 316, 441, 1081, 1327
HpySE526I ACGT 4 cut(s) 328, 547, 850, 1009
Hsp92II CATG 2 cut(s) 60, 632
Kpn2I TCCGGA 1 cut(s) 964
Kzo9I GATC 3 cut(s) 132, 286, 358
LguI GCTCTTC 1 cut(s) 285
LmnI GCTCC 5 cut(s) 70, 80, 197, 967, 1241
Lsp1109I GCAGC 8 cut(s) 70, 91, 179, 335, 406, 745, 889, 985
LweI GCATC 2 cut(s) 745, 1207
MaeI CTAG 3 cut(s) 342, 377, 1167
MaeII ACGT 4 cut(s) 328, 547, 850, 1009
MaeIII GTNAC 2 cut(s) 496, 846
MalI GATC 3 cut(s) 134, 288, 360
MboI GATC 3 cut(s) 132, 286, 358
MfeI CAATTG 1 cut(s) 69
MflI RGATCY 3 cut(s) 132, 286, 358
MhlI GDGCHC 1 cut(s) 938
MluCI AATT 5 cut(s) 69, 367, 594, 957, 1313
MlyI GAGTC 1 cut(s) 321
MmeI TCCRAC 1 cut(s) 624
MroI TCCGGA 1 cut(s) 964
MseI TTAA 5 cut(s) 582, 819, 875, 1145, 1184
MspI CCGG 1 cut(s) 965
MspR9I CCNGG 3 cut(s) 88, 711, 843
MunI CAATTG 1 cut(s) 69
Mva1269I GAATGC 3 cut(s) 91, 442, 1328
MvaI CCWGG 3 cut(s) 88, 711, 843
MwoI GCNNNNNNNGC 8 cut(s) 11, 62, 197, 683, 720, 1004, 1094, 1367
NdeII GATC 3 cut(s) 132, 286, 358
NlaIII CATG 2 cut(s) 60, 632
NlaIV GGNNCC 4 cut(s) 288, 339, 936, 1284
NspI RCATGY 1 cut(s) 60
PaeI GCATGC 1 cut(s) 60
PasI CCCWGGG 1 cut(s) 842
PceI AGGCCT 1 cut(s) 375
PciSI GCTCTTC 1 cut(s) 285
PcsI WCGNNNNNNNCGW 1 cut(s) 1231
PctI GAATGC 3 cut(s) 91, 442, 1328
PfeI GAWTC 4 cut(s) 124, 621, 727, 1177
PleI GAGTC 1 cut(s) 320
PmaCI CACGTG 1 cut(s) 329
PmlI CACGTG 1 cut(s) 329
PpsI GAGTC 1 cut(s) 320
Ppu21I YACGTR 4 cut(s) 329, 548, 851, 1010
PpuMI RGGWCCY 1 cut(s) 880
PshBI ATTAAT 1 cut(s) 819
Psp5II RGGWCCY 1 cut(s) 880
Psp6I CCWGG 3 cut(s) 86, 709, 841
PspCI CACGTG 1 cut(s) 329
PspGI CCWGG 3 cut(s) 86, 709, 841
PspN4I GGNNCC 4 cut(s) 288, 339, 936, 1284
PspOMI GGGCCC 1 cut(s) 934
PspPI GGNCC 6 cut(s) 12, 707, 880, 934, 935, 1283
PspPPI RGGWCCY 1 cut(s) 880
PsrI GAACNNNNNNTAC 2 cut(s) 765, 797
PstI CTGCAG 2 cut(s) 169, 1003
PstNI CAGNNNCTG 1 cut(s) 1067
PsuI RGATCY 3 cut(s) 132, 286, 358
RsaI GTAC 5 cut(s) 661, 774, 897, 1012, 1157
RsaNI GTAC 5 cut(s) 660, 773, 896, 1011, 1156
SapI GCTCTTC 1 cut(s) 285
SaqAI TTAA 5 cut(s) 582, 819, 875, 1145, 1184
Sau3AI GATC 3 cut(s) 132, 286, 358
Sau96I GGNCC 6 cut(s) 12, 707, 880, 934, 935, 1283
ScaI AGTACT 1 cut(s) 661
SchI GAGTC 1 cut(s) 321
ScrFI CCNGG 3 cut(s) 88, 711, 843
SduI GDGCHC 1 cut(s) 938
SfaNI GCATC 2 cut(s) 745, 1207
SfcI CTRYAG 2 cut(s) 165, 999
SinI GGWCC 1 cut(s) 880
SmlI CTYRAG 2 cut(s) 16, 1105
SmoI CTYRAG 2 cut(s) 16, 1105
SnaBI TACGTA 1 cut(s) 851
SphI GCATGC 1 cut(s) 60
Sse9I AATT 5 cut(s) 69, 367, 594, 957, 1313
SseBI AGGCCT 1 cut(s) 375
SsiI CCGC 3 cut(s) 5, 321, 613
SspMI CTAG 3 cut(s) 342, 377, 1167
StuI AGGCCT 1 cut(s) 375
StyD4I CCNGG 3 cut(s) 86, 709, 841
StyI CCWWGG 1 cut(s) 341
TaaI ACNGT 4 cut(s) 214, 1051, 1069, 1351
TaiI ACGT 4 cut(s) 331, 550, 853, 1012
TaqI TCGA 1 cut(s) 1225
TasI AATT 5 cut(s) 69, 367, 594, 957, 1313
TatI WGTACW 3 cut(s) 659, 772, 1155
TauI GCSGC 2 cut(s) 8, 323
TfiI GAWTC 4 cut(s) 124, 621, 727, 1177
Tru1I TTAA 5 cut(s) 582, 819, 875, 1145, 1184
Tru9I TTAA 5 cut(s) 582, 819, 875, 1145, 1184
TscAI CASTG 3 cut(s) 1008, 1089, 1213
TseI GCWGC 8 cut(s) 83, 104, 167, 323, 419, 758, 902, 998
TspDTI ATGAA 8 cut(s) 234, 567, 654, 663, 696, 773, 816, 927
TspRI CASTG 3 cut(s) 1008, 1089, 1213
VpaK11BI GGWCC 1 cut(s) 880
VspI ATTAAT 1 cut(s) 819
XagI CCTNNNNNAGG 2 cut(s) 1145, 1185
XapI RAATTY 1 cut(s) 367
XceI RCATGY 1 cut(s) 60
XcmI CCANNNNNNNNNTGG 1 cut(s) 178
XmaJI CCTAGG 1 cut(s) 341
XmiI GTMKAC 1 cut(s) 1133
XspI CTAG 3 cut(s) 342, 377, 1167
ZrmI AGTACT 1 cut(s) 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.