Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004775

Physical Location & Seq

Genomic Coordinates Reverse (-)

60682733 .. 60692050

Gene Structure 9318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0452300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2346 bp

ATGGCAGCATTTATCAAGCTCGAGGATTCCCCAATGTTTCAGAAGCAGGTATGTAATCTAGAACAGACAGCTGATGAGTTGAAAGAGCGATGCCAAAAACTATTCAAAGGGTGTAAGAAGTTTATGGCGGCTCTTGGAGAAGCATGTAATGGTGACACCACTTTTGCAGATTCATTGGAAGCATTTGGTGGTGATCTGGATGATCCTATAAGTGTTGCAATAGGAGGTCCAGTACTATCCAAATTCATTTCTGCATTTCGAGAGCTTGCTACATATAAAGAGCTTCTTCGCACCCAAGTAGAGCATGTGTTAGTCAATCGGTTGATGCACTTTATGTCAGTTGATCTGCAAGATGCAAAGGAGTCCCGACGCCGCTTTGACAAGGCAATACATGTTTATGATCAGTCACGGGAAAAGTTTGTATCCTTAAAGAAGAATACACGGGGAGACATTGTTTCTGAACTAGAGGAGGATCTACAAAATTCAAAATCAGCATTCGAGAAAGGCCGCTTCAACCTAGTAAATTCCCTAATGAATATTGAAGCAAAAAAGAAGTATGAATTTTTGGAATCTATTAGTGCAATCATGGATGGTCATCTAAGATACTTTAAACTGGGATATGAGTTATTGAGCCAAATGGAGCCTTATATTCACCAGGTGTTGACATATGCACAACAATCTAAAGAACAGGCTACTGTTGAACAAGATAAACTTCACAAAAGGATTCAGGAATTTAGGACACAAGCTGAGATGGATAGTATACGAGCTTCCAGTAACTTTGAGGCTTCTGCAGTGGTTGAAGGACATCGTGCCTTTGGTTTGGCTTCATACAAAAACGTAGAACCAATCACCTTTGAAAATGGGAAGCCACAGACAATCAAGGAAGGATATCTACTGAAACGATCGTCAAATTTGAGGGGAGACTGGAAGAGAAGGTTTTTTGTACTGAACAGTCAAGGGGCTTTGTTTTATTACAGAATCAAGGGTACCAAACCCATGGGATCTCAAGCACATCACTTCACACGTTCAACTGAACATAATAGCGGTGTTTTCGGGAGATTCCGCTCAAAAAATAGGGCATCGTCACTTAATGAAAACATTCTGGGCTGCCGAACTGTTGATCTGTGCACCTCAACAATTAAGATGGATGCAGAAGATACAGACCTTCGACTTTGCTTCAGAATAATATCCCCATCGAAAACGTACACATTGCAGGCTGAAAATGAGGCCGATAGGATGGATTGGATGAACAAAATAACAGGAGCTATTACATCGCTGCTGAATTTTCGGCTTCTTGAACAGCCACATCCGGGAAATGCGAATCTCGAGAGTTGTGAATTCAGTGTTGGTGATGTTTGTCGAGTAGCTAGCTGTGAAAGCTTACATAACATACAATTCAATAGAGTTGATTGTGTTTCTACTGCTCTTAGGGGAATCCCTGGAAATGATCTTTGTGCAGAGTGCAGTAGTCCTGAGCCTGATTGGGCATCTCTTAATCTTGGGATACTGTTATGCATTGAATGTTCTGGTGCTCATCGGAATCTTGGTGTACATATTTCAAAGGTGAGATCTATAACATTAGATGTCAAAGTTTGGGAACCAACAATTGTGGACTTATTTCGCAACTTGGGTAATGCTTACTGTAATTCTTTGTGGGAGGGAAAGCTTCTACTCAAAAATGAAAGATTGGATGGCCCAAATGCCATTAGGGCTTCAATTTCAAAACCATGTCCCCAAGATGCAATTCAGCATAAGGAAATTTACATTCAAGCAAAGTATGTAGAGAAGGTGATGGTCATTAGAGATGTGGCTGTACCTGTCCTTGCAGCAAGTATATGGGAAGCAGTCAAGACTAGTAACTTACAAGAAGTCTATCGGCTTATTGTGATATCAGATATGAATATTGTCGACACCACCTATGATGATGTGGTTGGCGACAATTTATATCACCATGTTGATGCACAAGACTCAGAGTTGAGTTTTCCCCCAATAGAGAGCAAACAGCACGATCCAGCAGCATGTGAGAGAATCAAGACTTCCAATGATCAAGGGAACTGCCTTCAAGGTTGTTCATTATTGCATCTGGCTTGTCACTCTGGCAATGCAATGATGCTTGAATTGTTGCTGCAATTTGGTGCCAACATAAATAGGTGTGATTTCCATGGAAGGACTCCTTTACACCACTGTATCTGCAGCGGGAATAATTCGCTGGCGAAGTTTCTACTTAGAAGAGGTGCACGCCCATCTATTCAAGATGGAGGAGGGCAAAGCGTACTGGAAAGAGCAATGGAGATGGGAGCGATTACGGATGAGGATTTATTCATAAAACTTTCTGAACATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004152 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006220 GO:0006221 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009165 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016491 GO:0016627 GO:0016635 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0055086 GO:0055114 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

DHO_dh

Protein Analysis

781

Amino Acids

87.95

Weight (kDa)

6.27

Isoelectric Point (pI)

43.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAR_3	PF16746	7 - 238	1.2e-37	BAR domain of APPL family
BAR	PF03114	18 - 217	7.5e-13	BAR domain
PH	PF00169	293 - 423	2.2e-13	PH domain
ArfGap	PF01412	475 - 598	3.5e-30	Putative GTPase activating protein for Arf
Ank_2	PF12796	681 - 752	6.7e-13	Ankyrin repeats (3 copies)
Ank_5	PF13857	685 - 728	7.9e-06	Ankyrin repeats (many copies)
Ank	PF00023	689 - 719	3.5e-06	Ankyrin repeat
Ank_4	PF13637	693 - 742	3e-07	Ankyrin repeats (many copies)
Ank	PF00023	721 - 752	8.2e-06	Ankyrin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23300
fragaria_vesca	FvH4_3g07800 FvH4_3g07800 FvH4_3g07800
malus_domestica	MD05G1301200.v1.1 MD10G1280100.v1.1
prunus_persica	Prupe.4G061300_v2.0.a1 Prupe.6G003700_v2.0.a1 Prupe.6G003700_v2.0.a1 Prupe.6G003700_v2.0.a1
pyrus_communis	pycom05g27900 pycom10g23390
rosa_chinensis	RchiOBHm_Chr5g0010781 RchiOBHm_Chr5g0050031 RchiOBHm_Chr5g0064321
rosa_laevigata	RLG00000031779
rosa_multiflora	Rmu_sc0000109.1_g000020
rosa_roxburghii	Rroxscaffold_1G00065600
rosa_rugosa	Rorug04G0424400 Rorug04G0424500 Rorug04G0452200 Rorug04G0452300 Rorug04G0452400 Rorug06G0421900
rosa_samantha	Rh5AG084600 Rh5BG340700 Rh5CG092100 Rh5DG079500 Rh5DG353400
rosa_wichuraiana	Rw0G000560 Rw0G022270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	37
Acc65I	GGTACC	1 cut(s)	986
AccB1I	GGYRCC	2 cut(s)	986, 2135
AccBSI	CCGCTC	1 cut(s)	1065
AccI	GTMKAC	2 cut(s)	760, 1908
AciI	CCGC	6 cut(s)	128, 373, 508, 1044, 1063, 2196
AclWI	GGATC	4 cut(s)	197, 480, 1009, 2003
AcsI	RAATTY	9 cut(s)	242, 481, 523, 560, 731, 910, 1282, 1337, 1758
AcuI	CTGAAG	1 cut(s)	1162
AcyI	GRCGYC	1 cut(s)	370
AdeI	CACNNNGTG	1 cut(s)	658
AfaI	GTAC	7 cut(s)	234, 945, 988, 1205, 1551, 1815, 2274
AfiI	CCNNNNNNNGG	1 cut(s)	1310
AflIII	ACRYGT	2 cut(s)	391, 1022
AhlI	ACTAGT	1 cut(s)	1853
AjnI	CCWGG	2 cut(s)	654, 1438
AjuI	GAANNNNNNNTTGG	4 cut(s)	1329, 1361, 1728, 1760
Alw21I	GWGCWC	3 cut(s)	1130, 1534, 2239
Alw26I	GTCTC	2 cut(s)	441, 915
Alw44I	GTGCAC	2 cut(s)	1126, 2235
AlwI	GGATC	4 cut(s)	197, 480, 1009, 2003
Ama87I	CYCGRG	2 cut(s)	20, 1325
AoxI	GGCC	3 cut(s)	505, 1227, 1693
ApaLI	GTGCAC	2 cut(s)	1126, 2235
ApeKI	GCWGC	7 cut(s)	5, 1107, 1276, 1826, 2015, 2125, 2193
ApoI	RAATTY	9 cut(s)	242, 481, 523, 560, 731, 910, 1282, 1337, 1758
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
Asp700I	GAANNNNTTC	1 cut(s)	1098
Asp718I	GGTACC	1 cut(s)	986
AspS9I	GGNCC	2 cut(s)	227, 1694
AsuC2I	CCSGG	1 cut(s)	1311
AsuHPI	GGTGA	8 cut(s)	164, 203, 644, 841, 1361, 1576, 1801, 1940
AsuNHI	GCTAGC	1 cut(s)	1367
AvaI	CYCGRG	2 cut(s)	20, 1325
AvaII	GGWCC	1 cut(s)	227
BaeGI	GKGCMC	2 cut(s)	1130, 2239
BaeI	ACNNNNGTAYC	2 cut(s)	2170, 2203
BanI	GGYRCC	2 cut(s)	986, 2135
BarI	GAAGNNNNNNTAC	4 cut(s)	751, 783, 876, 908
Bbv12I	GWGCWC	3 cut(s)	1130, 1534, 2239
BbvI	GCAGC	7 cut(s)	17, 1094, 1263, 1838, 2027, 2112, 2205
BciT130I	CCWGG	2 cut(s)	656, 1440
BciVI	GTATCC	2 cut(s)	433, 1497
BclI	TGATCA	2 cut(s)	400, 2044
BcnI	CCSGG	1 cut(s)	1311
BcoDI	GTCTC	2 cut(s)	441, 915
BcuI	ACTAGT	1 cut(s)	1853
BfaI	CTAG	5 cut(s)	59, 464, 518, 1368, 1854
BfmI	CTRYAG	2 cut(s)	789, 2191
BfuAI	ACCTGC	1 cut(s)	37
BfuI	GTATCC	2 cut(s)	433, 1497
BglI	GCCNNNNNGGC	1 cut(s)	1709
BglII	AGATCT	1 cut(s)	1568
BmcAI	AGTACT	1 cut(s)	234
Bme1390I	CCNGG	3 cut(s)	656, 1311, 1440
Bme18I	GGWCC	1 cut(s)	227
BmeT110I	CYCGRG	2 cut(s)	20, 1325
BmgT120I	GGNCC	2 cut(s)	227, 1694
BmiI	GGNNCC	4 cut(s)	642, 988, 1599, 2137
BmrFI	CCNGG	3 cut(s)	656, 1311, 1440
BmrI	ACTGGG	1 cut(s)	623
BmtI	GCTAGC	1 cut(s)	1371
BmuI	ACTGGG	1 cut(s)	623
Bpu10I	CCTNAGC	1 cut(s)	1473
BpuEI	CTTGAG	1 cut(s)	990
BpuMI	CCSGG	1 cut(s)	1311
BsaBI	GATNNNNATC	1 cut(s)	594
BsaHI	GRCGYC	1 cut(s)	370
BsaJI	CCNNGG	3 cut(s)	996, 1438, 2161
BsaXI	ACNNNNNCTCC	4 cut(s)	216, 246, 438, 468
Bsc4I	CCNNNNNNNGG	1 cut(s)	1310
Bse1I	ACTGG	5 cut(s)	230, 618, 771, 929, 2280
Bse3DI	GCAATG	4 cut(s)	1208, 2107, 2112, 2292
Bse8I	GATNNNNATC	1 cut(s)	594
BseBI	CCWGG	2 cut(s)	656, 1440
BseDI	CCNNGG	3 cut(s)	996, 1438, 2161
BseGI	GGATG	8 cut(s)	205, 595, 1153, 1242, 1251, 1306, 1696, 2314
BseJI	GATNNNNATC	1 cut(s)	594
BseLI	CCNNNNNNNGG	1 cut(s)	1310
BseMI	GCAATG	4 cut(s)	1208, 2107, 2112, 2292
BseMII	CTCAG	3 cut(s)	738, 1464, 1983
BseNI	ACTGG	5 cut(s)	230, 618, 771, 929, 2280
BseRI	GAGGAG	2 cut(s)	482, 2274
BseSI	GKGCMC	2 cut(s)	1130, 2239
BseXI	GCAGC	7 cut(s)	17, 1094, 1263, 1838, 2027, 2112, 2205
BsgI	GTGCAG	2 cut(s)	1476, 1483
Bsh1285I	CGRYCG	1 cut(s)	905
BshFI	GGCC	3 cut(s)	507, 1229, 1695
BshNI	GGYRCC	2 cut(s)	986, 2135
BsiEI	CGRYCG	1 cut(s)	905
BsiHKAI	GWGCWC	3 cut(s)	1130, 1534, 2239
BsiHKCI	CYCGRG	2 cut(s)	20, 1325
BsiSI	CCGG	1 cut(s)	1310
BslFI	GGGAC	2 cut(s)	349, 1716
BslI	CCNNNNNNNGG	1 cut(s)	1310
BsmAI	GTCTC	2 cut(s)	441, 915
BsmFI	GGGAC	2 cut(s)	349, 1716
BsmI	GAATGC	1 cut(s)	494
BsnI	GGCC	3 cut(s)	507, 1229, 1695
BsoBI	CYCGRG	2 cut(s)	20, 1325
Bsp1286I	GDGCHC	3 cut(s)	1130, 1534, 2239
Bsp1407I	TGTACA	1 cut(s)	1549
Bsp19I	CCATGG	2 cut(s)	996, 2161
BspACI	CCGC	6 cut(s)	128, 373, 508, 1044, 1063, 2196
BspANI	GGCC	3 cut(s)	507, 1229, 1695
BspCNI	CTCAG	3 cut(s)	739, 1465, 1982
BspLI	GGNNCC	4 cut(s)	642, 988, 1599, 2137
BspMAI	CTGCAG	2 cut(s)	793, 2195
BspMI	ACCTGC	1 cut(s)	37
BspOI	GCTAGC	1 cut(s)	1371
BspPI	GGATC	4 cut(s)	197, 480, 1009, 2003
BspT107I	GGYRCC	2 cut(s)	986, 2135
BsrBI	CCGCTC	1 cut(s)	1065
BsrDI	GCAATG	4 cut(s)	1208, 2107, 2112, 2292
BsrGI	TGTACA	1 cut(s)	1549
BsrI	ACTGG	5 cut(s)	230, 618, 771, 929, 2280
BssECI	CCNNGG	3 cut(s)	996, 1438, 2161
BssNAI	GTATAC	1 cut(s)	761
BssNI	GRCGYC	1 cut(s)	370
BssT1I	CCWWGG	2 cut(s)	996, 2161
Bst1107I	GTATAC	1 cut(s)	761
Bst2UI	CCWGG	2 cut(s)	656, 1440
Bst4CI	ACNGT	6 cut(s)	697, 953, 1117, 1509, 1643, 2186
Bst6I	CTCTTC	2 cut(s)	923, 2224
BstACI	GRCGYC	1 cut(s)	370
BstAUI	TGTACA	1 cut(s)	1549
BstC8I	GCNNGC	5 cut(s)	267, 1215, 1369, 2211, 2239
BstDEI	CTNAG	6 cut(s)	599, 747, 1427, 1473, 1969, 2225
BstDSI	CCRYGG	2 cut(s)	996, 2161
BstF5I	GGATG	8 cut(s)	205, 595, 1153, 1242, 1251, 1306, 1696, 2314
BstMAI	GTCTC	2 cut(s)	441, 915
BstMCI	CGRYCG	1 cut(s)	905
BstMWI	GCNNNNNNNGC	2 cut(s)	1377, 1709
BstNI	CCWGG	2 cut(s)	656, 1440
BstNSI	RCATGY	4 cut(s)	147, 308, 395, 2022
BstSCI	CCNGG	3 cut(s)	654, 1309, 1438
BstSFI	CTRYAG	2 cut(s)	789, 2191
BstSLI	GKGCMC	2 cut(s)	1130, 2239
BstV1I	GCAGC	7 cut(s)	17, 1094, 1263, 1838, 2027, 2112, 2205
BstX2I	RGATCY	3 cut(s)	472, 1001, 1568
BstXI	CCANNNNNNTGG	1 cut(s)	997
BstYI	RGATCY	3 cut(s)	472, 1001, 1568
BstZ17I	GTATAC	1 cut(s)	761
BsuI	GTATCC	2 cut(s)	433, 1497
BsuRI	GGCC	3 cut(s)	507, 1229, 1695
BtgI	CCRYGG	2 cut(s)	996, 2161
BtgZI	GCGATG	2 cut(s)	103, 1257
BtsCI	GGATG	8 cut(s)	205, 595, 1153, 1242, 1251, 1306, 1696, 2314
BtsI	GCAGTG	1 cut(s)	798
BtsIMutI	CAGTG	3 cut(s)	798, 1348, 2182
BveI	ACCTGC	1 cut(s)	37
Cac8I	GCNNGC	5 cut(s)	267, 1215, 1369, 2211, 2239
Cfr13I	GGNCC	2 cut(s)	227, 1694
CseI	GACGC	1 cut(s)	378
CsiI	ACCWGGT	1 cut(s)	654
Csp6I	GTAC	7 cut(s)	233, 944, 987, 1204, 1550, 1814, 2273
CspCI	CAANNNNNGTGG	2 cut(s)	1590, 1625
CviQI	GTAC	7 cut(s)	233, 944, 987, 1204, 1550, 1814, 2273
DdeI	CTNAG	6 cut(s)	599, 747, 1427, 1473, 1969, 2225
DraI	TTTAAA	1 cut(s)	610
DraIII	CACNNNGTG	1 cut(s)	658
Eam1104I	CTCTTC	2 cut(s)	923, 2224
EarI	CTCTTC	2 cut(s)	923, 2224
Eco130I	CCWWGG	2 cut(s)	996, 2161
Eco32I	GATATC	2 cut(s)	890, 1890
Eco47I	GGWCC	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	1162
Eco88I	CYCGRG	2 cut(s)	20, 1325
EcoRI	GAATTC	1 cut(s)	1337
EcoRII	CCWGG	2 cut(s)	654, 1438
EcoRV	GATATC	2 cut(s)	890, 1890
EcoT14I	CCWWGG	2 cut(s)	996, 2161
EcoT22I	ATGCAT	1 cut(s)	1517
ErhI	CCWWGG	2 cut(s)	996, 2161
FalI	AAGNNNNNCTT	6 cut(s)	270, 302, 696, 728, 2158, 2190
FaqI	GGGAC	2 cut(s)	349, 1716
FauI	CCCGC	1 cut(s)	2189
FauNDI	CATATG	1 cut(s)	667
FbaI	TGATCA	2 cut(s)	400, 2044
FblI	GTMKAC	2 cut(s)	760, 1908
FokI	GGATG	8 cut(s)	212, 602, 1160, 1249, 1258, 1293, 1703, 2321
FspBI	CTAG	5 cut(s)	59, 464, 518, 1368, 1854
HaeIII	GGCC	3 cut(s)	507, 1229, 1695
HapII	CCGG	1 cut(s)	1310
HgaI	GACGC	1 cut(s)	378
Hin1I	GRCGYC	1 cut(s)	370
HincII	GTYRAC	2 cut(s)	663, 1909
HindII	GTYRAC	2 cut(s)	663, 1909
HindIII	AAGCTT	2 cut(s)	1378, 1664
HpaII	CCGG	1 cut(s)	1310
HphI	GGTGA	8 cut(s)	164, 203, 644, 841, 1361, 1576, 1801, 1940
Hpy166II	GTNNAC	8 cut(s)	663, 761, 1128, 1206, 1550, 1612, 1909, 2237
Hpy188I	TCNGA	7 cut(s)	42, 460, 1181, 1539, 1894, 1972, 2335
Hpy8I	GTNNAC	8 cut(s)	663, 761, 1128, 1206, 1550, 1612, 1909, 2237
Hpy99I	CGWCG	1 cut(s)	372
HpyAV	CCTTC	7 cut(s)	794, 878, 927, 1175, 1780, 2069, 2160
HpyCH4III	ACNGT	6 cut(s)	697, 953, 1117, 1509, 1643, 2186
HpyCH4IV	ACGT	3 cut(s)	837, 1024, 1202
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1377, 1709
HpyF3I	CTNAG	6 cut(s)	599, 747, 1427, 1473, 1969, 2225
HpySE526I	ACGT	3 cut(s)	837, 1024, 1202
Hsp92I	GRCGYC	1 cut(s)	370
KpnI	GGTACC	1 cut(s)	990
Ksp22I	TGATCA	2 cut(s)	400, 2044
LmnI	GCTCC	3 cut(s)	640, 1262, 2297
Lsp1109I	GCAGC	7 cut(s)	17, 1094, 1263, 1838, 2027, 2112, 2205
MabI	ACCWGGT	1 cut(s)	654
MaeI	CTAG	5 cut(s)	59, 464, 518, 1368, 1854
MaeII	ACGT	3 cut(s)	837, 1024, 1202
MaeIII	GTNAC	6 cut(s)	152, 405, 773, 1083, 1856, 2090
MbiI	CCGCTC	1 cut(s)	1065
MboII	GAAGA	5 cut(s)	278, 445, 940, 1166, 2241
MfeI	CAATTG	1 cut(s)	1605
MflI	RGATCY	3 cut(s)	472, 1001, 1568
MhlI	GDGCHC	3 cut(s)	1130, 1534, 2239
MlyI	GAGTC	3 cut(s)	371, 1961, 2164
Mph1103I	ATGCAT	1 cut(s)	1517
MroXI	GAANNNNTTC	1 cut(s)	1098
MseI	TTAA	5 cut(s)	428, 609, 1089, 1140, 1494
MslI	CAYNNNNRTG	2 cut(s)	396, 1956
MspA1I	CMGCKG	2 cut(s)	71, 2196
MspI	CCGG	1 cut(s)	1310
MspR9I	CCNGG	3 cut(s)	656, 1311, 1440
MunI	CAATTG	1 cut(s)	1605
Mva1269I	GAATGC	1 cut(s)	494
MvaI	CCWGG	2 cut(s)	656, 1440
MwoI	GCNNNNNNNGC	2 cut(s)	1377, 1709
NciI	CCSGG	1 cut(s)	1311
NcoI	CCATGG	2 cut(s)	996, 2161
NdeI	CATATG	1 cut(s)	667
NheI	GCTAGC	1 cut(s)	1367
NlaIV	GGNNCC	4 cut(s)	642, 988, 1599, 2137
NmuCI	GTSAC	4 cut(s)	152, 405, 1083, 2090
NsiI	ATGCAT	1 cut(s)	1517
NspI	RCATGY	4 cut(s)	147, 308, 395, 2022
PaeR7I	CTCGAG	2 cut(s)	20, 1325
PciI	ACATGT	1 cut(s)	391
PctI	GAATGC	1 cut(s)	494
PdmI	GAANNNNTTC	1 cut(s)	1098
PfoI	TCCNGGA	1 cut(s)	1309
Ple19I	CGATCG	1 cut(s)	905
PleI	GAGTC	3 cut(s)	370, 1961, 2164
PpsI	GAGTC	3 cut(s)	370, 1961, 2164
PscI	ACATGT	1 cut(s)	391
Psp6I	CCWGG	2 cut(s)	654, 1438
PspGI	CCWGG	2 cut(s)	654, 1438
PspN4I	GGNNCC	4 cut(s)	642, 988, 1599, 2137
PspPI	GGNCC	2 cut(s)	227, 1694
PspXI	VCTCGAGB	1 cut(s)	20
PstI	CTGCAG	2 cut(s)	793, 2195
PsuI	RGATCY	3 cut(s)	472, 1001, 1568
PvuI	CGATCG	1 cut(s)	905
PvuII	CAGCTG	1 cut(s)	71
RsaI	GTAC	7 cut(s)	234, 945, 988, 1205, 1551, 1815, 2274
RsaNI	GTAC	7 cut(s)	233, 944, 987, 1204, 1550, 1814, 2273
RseI	CAYNNNNRTG	2 cut(s)	396, 1956
SalI	GTCGAC	1 cut(s)	1907
SaqAI	TTAA	5 cut(s)	428, 609, 1089, 1140, 1494
Sau96I	GGNCC	2 cut(s)	227, 1694
ScaI	AGTACT	1 cut(s)	234
SchI	GAGTC	3 cut(s)	371, 1961, 2164
ScrFI	CCNGG	3 cut(s)	656, 1311, 1440
SduI	GDGCHC	3 cut(s)	1130, 1534, 2239
SexAI	ACCWGGT	1 cut(s)	654
SfcI	CTRYAG	2 cut(s)	789, 2191
Sfr274I	CTCGAG	2 cut(s)	20, 1325
SinI	GGWCC	1 cut(s)	227
SlaI	CTCGAG	2 cut(s)	20, 1325
SmiMI	CAYNNNNRTG	2 cut(s)	396, 1956
SmlI	CTYRAG	3 cut(s)	20, 1005, 1325
SmoI	CTYRAG	3 cut(s)	20, 1005, 1325
SpeI	ACTAGT	1 cut(s)	1853
SsiI	CCGC	6 cut(s)	128, 373, 508, 1044, 1063, 2196
SspI	AATATT	2 cut(s)	538, 1903
SspMI	CTAG	5 cut(s)	59, 464, 518, 1368, 1854
StyD4I	CCNGG	3 cut(s)	654, 1309, 1438
StyI	CCWWGG	2 cut(s)	996, 2161
TaaI	ACNGT	6 cut(s)	697, 953, 1117, 1509, 1643, 2186
TaiI	ACGT	3 cut(s)	840, 1027, 1205
TaqI	TCGA	8 cut(s)	21, 259, 498, 1168, 1196, 1326, 1360, 1908
TatI	WGTACW	3 cut(s)	232, 943, 1549
TauI	GCSGC	3 cut(s)	131, 375, 510
Tru1I	TTAA	5 cut(s)	428, 609, 1089, 1140, 1494
Tru9I	TTAA	5 cut(s)	428, 609, 1089, 1140, 1494
TscAI	CASTG	3 cut(s)	798, 1348, 2189
TseFI	GTSAC	4 cut(s)	152, 405, 1083, 2090
TseI	GCWGC	7 cut(s)	5, 1107, 1276, 1826, 2015, 2125, 2193
Tsp45I	GTSAC	4 cut(s)	152, 405, 1083, 2090
TspGWI	ACGGA	1 cut(s)	2321
TspRI	CASTG	3 cut(s)	798, 1348, 2189
VneI	GTGCAC	2 cut(s)	1126, 2235
VpaK11BI	GGWCC	1 cut(s)	227
XapI	RAATTY	9 cut(s)	242, 481, 523, 560, 731, 910, 1282, 1337, 1758
XbaI	TCTAGA	1 cut(s)	58
XceI	RCATGY	4 cut(s)	147, 308, 395, 2022
XhoI	CTCGAG	2 cut(s)	20, 1325
XmiI	GTMKAC	2 cut(s)	760, 1908
XmnI	GAANNNNTTC	1 cut(s)	1098
XspI	CTAG	5 cut(s)	59, 464, 518, 1368, 1854
ZrmI	AGTACT	1 cut(s)	234
Zsp2I	ATGCAT	1 cut(s)	1517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.