Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004775

Physical Location & Seq

Genomic Coordinates Reverse (-)

70251903 .. 70254464

Gene Structure 2562 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34034

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGAAGAGGTGATTAATGTTTCATCACCCAACACCCCCGGGCTACGTATGCTTCAAGGAAGAAAGCAATTAAAGGTCCTTGTGAAGAAGGTACAAGCTGCTCGTGATGAAATGCAATGGGGTGAAGAGGGCCCTCCTCCATTGCTCGTGAAAATTGCTCCAGATTTGTCTAAAGAAGATCTCGAAGATATTGCTGTAGTATGTGGCCTTGCCCTTTGCTTGGACGGATTGAATCTAAATAAGACTGGGATTTGTTTGTGTAGGATGATGATGGTTGCTAGAAATTGCTTGATGTGGCAGGGTTGCTTCATTTCTTCTGAGGTTGCTGCATTGGCTTTGAGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004152 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006220 GO:0006221 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009165 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016491 GO:0016627 GO:0016635 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0055086 GO:0055114 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

DHO_dh

Protein Analysis

115

Amino Acids

12.65

Weight (kDa)

5.51

Isoelectric Point (pI)

39.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHO_dh	PF01180	4 - 83	3.3e-14	Dihydroorotate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23300
fragaria_vesca	FvH4_3g07800 FvH4_3g07800 FvH4_3g07800
malus_domestica	MD05G1301200.v1.1 MD10G1280100.v1.1
prunus_persica	Prupe.4G061300_v2.0.a1 Prupe.6G003700_v2.0.a1 Prupe.6G003700_v2.0.a1 Prupe.6G003700_v2.0.a1
pyrus_communis	pycom05g27900 pycom10g23390
rosa_chinensis	RchiOBHm_Chr5g0010781 RchiOBHm_Chr5g0050031 RchiOBHm_Chr5g0064321
rosa_laevigata	RLG00000031779
rosa_multiflora	Rmu_sc0000109.1_g000020
rosa_roxburghii	Rroxscaffold_1G00065600
rosa_rugosa	Rorug04G0424400 Rorug04G0424500 Rorug04G0452200 Rorug04G0452300 Rorug04G0452400 Rorug06G0421900
rosa_samantha	Rh5AG084600 Rh5BG340700 Rh5CG092100 Rh5DG079500 Rh5DG353400
rosa_wichuraiana	Rw0G000560 Rw0G022270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	93
AfiI	CCNNNNNNNGG	1 cut(s)	220
AgsI	TTSAA	2 cut(s)	56, 232
AluBI	AGCT	1 cut(s)	98
AluI	AGCT	1 cut(s)	98
Ama87I	CYCGRG	1 cut(s)	38
AoxI	GGCC	2 cut(s)	130, 205
ApaI	GGGCCC	1 cut(s)	134
ApeKI	GCWGC	2 cut(s)	98, 326
AseI	ATTAAT	1 cut(s)	15
AspS9I	GGNCC	3 cut(s)	76, 130, 131
AsuC2I	CCSGG	2 cut(s)	39, 40
AsuHPI	GGTGA	3 cut(s)	18, 22, 134
AvaI	CYCGRG	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	76
BaeGI	GKGCMC	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	134
BauI	CACGAG	2 cut(s)	102, 146
BbvI	GCAGC	2 cut(s)	85, 313
BccI	CCATC	1 cut(s)	265
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BcnI	CCSGG	2 cut(s)	39, 40
BfaI	CTAG	1 cut(s)	279
BfmI	CTRYAG	1 cut(s)	195
BglII	AGATCT	1 cut(s)	178
BisI	GCNGC	2 cut(s)	99, 327
BlsI	GCNGC	2 cut(s)	100, 328
Bme1390I	CCNGG	2 cut(s)	39, 40
Bme18I	GGWCC	1 cut(s)	76
BmeT110I	CYCGRG	1 cut(s)	38
BmgT120I	GGNCC	3 cut(s)	76, 130, 131
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	2 cut(s)	39, 40
BmrI	ACTGGG	1 cut(s)	255
BmuI	ACTGGG	1 cut(s)	255
BpmI	CTGGAG	1 cut(s)	144
BpuMI	CCSGG	2 cut(s)	39, 40
BsaAI	YACGTR	1 cut(s)	47
BsaJI	CCNNGG	2 cut(s)	37, 38
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
Bse1I	ACTGG	1 cut(s)	250
Bse3DI	GCAATG	2 cut(s)	122, 140
BseDI	CCNNGG	2 cut(s)	37, 38
BseGI	GGATG	1 cut(s)	270
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseMI	GCAATG	2 cut(s)	122, 140
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	250
BseRI	GAGGAG	1 cut(s)	126
BseSI	GKGCMC	1 cut(s)	134
BseXI	GCAGC	2 cut(s)	85, 313
BshFI	GGCC	2 cut(s)	132, 207
BsiHKCI	CYCGRG	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	39
BslI	CCNNNNNNNGG	1 cut(s)	220
BsnI	GGCC	2 cut(s)	132, 207
BsoBI	CYCGRG	1 cut(s)	38
Bsp120I	GGGCCC	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp143I	GATC	1 cut(s)	178
BspANI	GGCC	2 cut(s)	132, 207
BspCNI	CTCAG	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	132
BsrDI	GCAATG	2 cut(s)	122, 140
BsrI	ACTGG	1 cut(s)	250
BssECI	CCNNGG	2 cut(s)	37, 38
BssMI	GATC	1 cut(s)	178
BssSI	CACGAG	2 cut(s)	102, 146
Bst2BI	CACGAG	2 cut(s)	102, 146
Bst6I	CTCTTC	1 cut(s)	120
BstBAI	YACGTR	1 cut(s)	47
BstDEI	CTNAG	1 cut(s)	318
BstF5I	GGATG	1 cut(s)	270
BstKTI	GATC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	178
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 332
BstSCI	CCNGG	2 cut(s)	37, 38
BstSFI	CTRYAG	1 cut(s)	195
BstSLI	GKGCMC	1 cut(s)	134
BstSNI	TACGTA	1 cut(s)	47
BstV1I	GCAGC	2 cut(s)	85, 313
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BsuRI	GGCC	2 cut(s)	132, 207
BtsCI	GGATG	1 cut(s)	270
Cfr13I	GGNCC	3 cut(s)	76, 130, 131
Cfr9I	CCCGGG	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	92
CviJI	RGCY	5 cut(s)	43, 98, 132, 207, 335
CviKI_1	RGCY	5 cut(s)	43, 98, 132, 207, 335
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	1 cut(s)	318
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Eco105I	TACGTA	1 cut(s)	47
Eco24I	GRGCYC	1 cut(s)	134
Eco47I	GGWCC	1 cut(s)	76
Eco88I	CYCGRG	1 cut(s)	38
EcoO109I	RGGNCCY	3 cut(s)	76, 130, 131
EcoT38I	GRGCYC	1 cut(s)	134
FaiI	YATR	2 cut(s)	50, 202
Fnu4HI	GCNGC	2 cut(s)	99, 327
FokI	GGATG	1 cut(s)	277
FriOI	GRGCYC	1 cut(s)	134
Fsp4HI	GCNGC	2 cut(s)	99, 327
FspBI	CTAG	1 cut(s)	279
GluI	GCNGC	2 cut(s)	99, 327
GsuI	CTGGAG	1 cut(s)	144
HaeIII	GGCC	2 cut(s)	132, 207
HapII	CCGG	1 cut(s)	39
HinfI	GANTC	1 cut(s)	232
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	3 cut(s)	18, 22, 134
Hpy188I	TCNGA	1 cut(s)	319
Hpy188III	TCNNGA	4 cut(s)	104, 148, 161, 182
HpyAV	CCTTC	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	46
HpyCH4V	TGCA	2 cut(s)	115, 329
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 332
HpyF3I	CTNAG	1 cut(s)	318
HpySE526I	ACGT	1 cut(s)	46
Kzo9I	GATC	1 cut(s)	178
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	4 cut(s)	52, 174, 231, 284
Lsp1109I	GCAGC	2 cut(s)	85, 313
MaeI	CTAG	1 cut(s)	279
MaeII	ACGT	1 cut(s)	46
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MboII	GAAGA	7 cut(s)	17, 72, 97, 137, 188, 197, 306
MflI	RGATCY	1 cut(s)	178
MhlI	GDGCHC	1 cut(s)	134
MluCI	AATT	3 cut(s)	68, 153, 283
MnlI	CCTC	5 cut(s)	121, 144, 147, 313, 333
MseI	TTAA	2 cut(s)	15, 71
MspI	CCGG	1 cut(s)	39
MspR9I	CCNGG	2 cut(s)	39, 40
MwoI	GCNNNNNNNGC	2 cut(s)	49, 332
NciI	CCSGG	2 cut(s)	39, 40
NdeII	GATC	1 cut(s)	178
NlaIV	GGNNCC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	232
PkrI	GCNGC	2 cut(s)	100, 328
Ppu21I	YACGTR	1 cut(s)	47
PpuMI	RGGWCCY	1 cut(s)	76
PshBI	ATTAAT	1 cut(s)	15
Psp5II	RGGWCCY	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	132
PspOMI	GGGCCC	1 cut(s)	130
PspPI	GGNCC	3 cut(s)	76, 130, 131
PspPPI	RGGWCCY	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
SaqAI	TTAA	2 cut(s)	15, 71
SatI	GCNGC	2 cut(s)	99, 327
Sau3AI	GATC	1 cut(s)	178
Sau96I	GGNCC	3 cut(s)	76, 130, 131
ScrFI	CCNGG	2 cut(s)	39, 40
SduI	GDGCHC	1 cut(s)	134
SetI	ASST	6 cut(s)	12, 49, 78, 93, 100, 324
SfcI	CTRYAG	1 cut(s)	195
SinI	GGWCC	1 cut(s)	76
SmaI	CCCGGG	1 cut(s)	40
SnaBI	TACGTA	1 cut(s)	47
Sse9I	AATT	3 cut(s)	68, 153, 283
SspMI	CTAG	1 cut(s)	279
StyD4I	CCNGG	2 cut(s)	37, 38
TaiI	ACGT	1 cut(s)	49
TaqI	TCGA	1 cut(s)	183
TasI	AATT	3 cut(s)	68, 153, 283
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	2 cut(s)	15, 71
Tru9I	TTAA	2 cut(s)	15, 71
TseI	GCWGC	2 cut(s)	98, 326
TspDTI	ATGAA	3 cut(s)	12, 123, 298
TspGWI	ACGGA	1 cut(s)	240
TspMI	CCCGGG	1 cut(s)	38
VpaK11BI	GGWCC	1 cut(s)	76
VspI	ATTAAT	1 cut(s)	15
XmaI	CCCGGG	1 cut(s)	38
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.