Prupe.6G003700_v2.0.a1

Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
402075 .. 407321
5247 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G003700.4

Sequence Viewer

Length: 1386 bp
ATGGCAGCAAGGGCTTCAAGAAAATTATTAAGAGACTTTTTGTTCAGAAGGGCATGCACAACTCCTATTGCAGGTGCACGACACTGTTCTTCTGCTGCAGAAACTGCTCCAAAGATTCCTCATTTTTCGAAGAAAGGGAGGTTGTTGACGGGAACCACCTTAGGCTTAGTTATAGGCGGAGGAGCTTATGTGAGCACTGTGGATGAAGCAACTTTCTGTGGCTGGCTATTCTCAGCTACAAAACTTGTGAATCCATTCTTCGCTCTTCTGGATCCAGAGGTTGCTCACAGACTGGGTGTCTCAGCCGCAGCACGAGGTTGGGTTCCTAGAGAGAAGAGACCAGATCCATCAAATTTAGGGCTAGACGTTTGGGGAAGGAAGTTTTCCAACCCTGTAGGTCTTGCTGCTGGATTTGATAAGAATGCTGAGGCTGTTGATGGTTTACTTGGTTTAGGCTTTGGCTTTGTAGAGATTGGCTCTGTAACCCCCGTTCCCCAAGAGGGCAATCCAAAGCCTCGTATCTTCAGATTGCGTGAGGAAGGAGCTATCATCAATCGATGTGGCTTTAATAGTGAAGGAATTGTTGCTGTTGCAAAGCGGTTGGGTGCTCAGCATGGTAAGAGGAAGTTGGATGAAACTACAAGCTCTTCATCTTCTTCAGGTGAAGAAGTCAAACCTGGAGGCAAAGCTGGCCCTGGAATACTAGGGGTGAATCTTGGGAAGAATAAGACAAGTGAAGATGCTTCTGCAGATTATGTACAAGGGGTTCATACATTGTCCCAGTATGCTGATTACTTGGTGATTAATGTTTCATCACCCAACACCCCTGGGTTACGTATGCTTCAGGGAAGAAAGCAGTTAAAGGACCTTGTGAAAAGGGTTCAAGCTGCTCGTGATGAAATGCAATGGGGTGAAGAGGGCTCTCCTCCATTGCTCGTGAAAATTGCTCCAGATTTGTCTAAAGAAGACCTTGAAGATATTGCTGCAGTTGCCCTTGCCCTTCGCTTGGATGGATTGATTATATCAAATACAACTGTTTCAAGATCAGATCCTGTTACTACAAACCCAGCGGCTTCTGAAGCTGGTGGCTTGAGTGGAAAGCCACTCTTTAATATCTCTACCAGTCTCTTAAAGGAGATGTACATTTTGACGAGGGGAAAGATTCCTCTAATAGGGTGTGGGGGCATTAGCAGTGGTGAGGATGCTTACAAAAAGATACGAGCTGGAGCAAGTCTTGTTCAGCTTTATACAGCATTTGCCTATGGGGGACCTGCTCTCATCCCCCAGATAAAGGCTGAATTGTCTGAGTGCTTAGAAAGGGATGGTTTCAAGTCCGTTAGTGAAGCAGTTGGTGCAGATTGCAGAGTGGCAACGCCAAAAGTATAA

Protein Analysis

462

Amino Acids

48.75

Weight (kDa)

9.17

Isoelectric Point (pI)

34.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 62
Acc36I ACCTGC 2 cut(s) 62, 1279
AciI CCGC 4 cut(s) 177, 306, 598, 1070
AclWI GGATC 4 cut(s) 266, 279, 338, 1043
AcsI RAATTY 1 cut(s) 352
AcuI CTGAAG 4 cut(s) 508, 642, 827, 1098
AfaI GTAC 2 cut(s) 759, 1142
AfiI CCNNNNNNNGG 5 cut(s) 71, 500, 1006, 1172, 1291
AgsI TTSAA 5 cut(s) 18, 884, 974, 1041, 1330
AhdI GACNNNNNGTC 1 cut(s) 296
AjnI CCWGG 3 cut(s) 676, 694, 826
AluBI AGCT 9 cut(s) 185, 236, 545, 645, 689, 887, 1082, 1223, 1243
AluI AGCT 9 cut(s) 185, 236, 545, 645, 689, 887, 1082, 1223, 1243
Alw21I GWGCWC 3 cut(s) 79, 197, 610
Alw26I GTCTC 4 cut(s) 27, 304, 331, 1130
Alw44I GTGCAC 1 cut(s) 75
AlwI GGATC 4 cut(s) 266, 279, 338, 1043
AlwNI CAGNNNCTG 2 cut(s) 104, 1052
AoxI GGCC 1 cut(s) 691
ApaLI GTGCAC 1 cut(s) 75
ApeKI GCWGC 6 cut(s) 5, 95, 308, 404, 887, 983
ApoI RAATTY 1 cut(s) 352
AseI ATTAAT 1 cut(s) 804
Asp700I GAANNNNTTC 1 cut(s) 254
AspS9I GGNCC 3 cut(s) 692, 865, 1268
AsuHPI GGTGA 6 cut(s) 674, 721, 807, 811, 923, 1208
AsuII TTCGAA 1 cut(s) 128
AvaII GGWCC 2 cut(s) 865, 1268
AxyI CCTNAGG 1 cut(s) 160
BaeGI GKGCMC 1 cut(s) 79
BamHI GGATCC 1 cut(s) 271
BanII GRGCYC 1 cut(s) 923
BauI CACGAG 3 cut(s) 312, 891, 935
BbsI GAAGAC 1 cut(s) 972
Bbv12I GWGCWC 3 cut(s) 79, 197, 610
BbvCI CCTCAGC 1 cut(s) 426
BbvI GCAGC 6 cut(s) 17, 82, 320, 391, 874, 970
BccI CCATC 4 cut(s) 355, 431, 1004, 1316
BciT130I CCWGG 3 cut(s) 678, 696, 828
BcoDI GTCTC 4 cut(s) 27, 304, 331, 1130
BfaI CTAG 3 cut(s) 327, 362, 704
BfmI CTRYAG 4 cut(s) 96, 393, 747, 984
BfuAI ACCTGC 2 cut(s) 62, 1279
BisI GCNGC 8 cut(s) 6, 96, 306, 309, 405, 888, 984, 1071
BlpI GCTNAGC 1 cut(s) 609
BlsI GCNGC 8 cut(s) 7, 97, 307, 310, 406, 889, 985, 1072
Bme1390I CCNGG 3 cut(s) 678, 696, 828
Bme18I GGWCC 2 cut(s) 865, 1268
BmeRI GACNNNNNGTC 1 cut(s) 296
BmgT120I GGNCC 3 cut(s) 692, 865, 1268
BmiI GGNNCC 4 cut(s) 154, 273, 324, 1269
BmrFI CCNGG 3 cut(s) 678, 696, 828
BmrI ACTGGG 2 cut(s) 302, 775
BmsI GCATC 2 cut(s) 730, 1192
BmuI ACTGGG 2 cut(s) 302, 775
BpiI GAAGAC 1 cut(s) 972
BplI GAGNNNNNCTC 2 cut(s) 461, 493
BpmI CTGGAG 3 cut(s) 699, 933, 1245
Bpu10I CCTNAGC 1 cut(s) 426
Bpu1102I GCTNAGC 1 cut(s) 609
Bpu14I TTCGAA 1 cut(s) 128
BpuEI CTTGAG 1 cut(s) 1111
Bsa29I ATCGAT 1 cut(s) 556
BsaAI YACGTR 1 cut(s) 836
BsaI GGTCTC 1 cut(s) 331
BsaJI CCNNGG 3 cut(s) 694, 826, 827
BsaXI ACNNNNNCTCC 2 cut(s) 174, 204
Bsc4I CCNNNNNNNGG 5 cut(s) 71, 500, 1006, 1172, 1291
Bse1I ACTGG 3 cut(s) 297, 781, 1122
Bse21I CCTNAGG 1 cut(s) 160
Bse3DI GCAATG 2 cut(s) 911, 929
BseBI CCWGG 3 cut(s) 678, 696, 828
BseCI ATCGAT 1 cut(s) 556
BseDI CCNNGG 3 cut(s) 694, 826, 827
BseGI GGATG 6 cut(s) 208, 637, 1015, 1207, 1278, 1327
BseLI CCNNNNNNNGG 5 cut(s) 71, 500, 1006, 1172, 1291
BseMI GCAATG 2 cut(s) 911, 929
BseMII CTCAG 5 cut(s) 246, 315, 417, 623, 1296
BseNI ACTGG 3 cut(s) 297, 781, 1122
BseRI GAGGAG 2 cut(s) 195, 915
BseSI GKGCMC 1 cut(s) 79
BseXI GCAGC 6 cut(s) 17, 82, 320, 391, 874, 970
BseYI CCCAGC 1 cut(s) 1066
BsgI GTGCAG 1 cut(s) 1374
BshFI GGCC 1 cut(s) 693
BshVI ATCGAT 1 cut(s) 556
BsiHKAI GWGCWC 3 cut(s) 79, 197, 610
BslFI GGGAC 2 cut(s) 763, 1281
BslI CCNNNNNNNGG 5 cut(s) 71, 500, 1006, 1172, 1291
BsmAI GTCTC 4 cut(s) 27, 304, 331, 1130
BsmFI GGGAC 2 cut(s) 763, 1281
BsmI GAATGC 1 cut(s) 427
BsnI GGCC 1 cut(s) 693
Bso31I GGTCTC 1 cut(s) 331
Bsp119I TTCGAA 1 cut(s) 128
Bsp1286I GDGCHC 4 cut(s) 79, 197, 610, 923
Bsp1407I TGTACA 2 cut(s) 757, 1140
Bsp143I GATC 4 cut(s) 271, 343, 1043, 1048
Bsp1720I GCTNAGC 1 cut(s) 609
BspACI CCGC 4 cut(s) 177, 306, 598, 1070
BspANI GGCC 1 cut(s) 693
BspCNI CTCAG 5 cut(s) 245, 314, 418, 622, 1297
BspDI ATCGAT 1 cut(s) 556
BspLI GGNNCC 4 cut(s) 154, 273, 324, 1269
BspMAI CTGCAG 3 cut(s) 100, 751, 988
BspMI ACCTGC 2 cut(s) 62, 1279
BspPI GGATC 4 cut(s) 266, 279, 338, 1043
BspQI GCTCTTC 2 cut(s) 270, 652
BspT104I TTCGAA 1 cut(s) 128
BspTNI GGTCTC 1 cut(s) 331
BsrDI GCAATG 2 cut(s) 911, 929
BsrGI TGTACA 2 cut(s) 757, 1140
BsrI ACTGG 3 cut(s) 297, 781, 1122
BssECI CCNNGG 3 cut(s) 694, 826, 827
BssMI GATC 4 cut(s) 271, 343, 1043, 1048
BssSI CACGAG 3 cut(s) 312, 891, 935
Bst2BI CACGAG 3 cut(s) 312, 891, 935
Bst2UI CCWGG 3 cut(s) 678, 696, 828
Bst4CI ACNGT 3 cut(s) 86, 199, 1036
Bst6I CTCTTC 4 cut(s) 270, 329, 652, 909
BstAPI GCANNNNNTGC 2 cut(s) 104, 1352
BstAUI TGTACA 2 cut(s) 757, 1140
BstBAI YACGTR 1 cut(s) 836
BstBI TTCGAA 1 cut(s) 128
BstC8I GCNNGC 3 cut(s) 55, 224, 691
BstDEI CTNAG 8 cut(s) 160, 166, 232, 301, 426, 609, 1305, 1312
BstENI CCTNNNNNAGG 2 cut(s) 69, 1170
BstF5I GGATG 6 cut(s) 208, 637, 1015, 1207, 1278, 1327
BstKTI GATC 4 cut(s) 274, 346, 1046, 1051
BstMAI GTCTC 4 cut(s) 27, 304, 331, 1130
BstMBI GATC 4 cut(s) 271, 343, 1043, 1048
BstMWI GCNNNNNNNGC 6 cut(s) 11, 104, 690, 989, 1079, 1352
BstNI CCWGG 3 cut(s) 678, 696, 828
BstNSI RCATGY 1 cut(s) 57
BstSCI CCNGG 3 cut(s) 676, 694, 826
BstSFI CTRYAG 4 cut(s) 96, 393, 747, 984
BstSLI GKGCMC 1 cut(s) 79
BstSNI TACGTA 1 cut(s) 836
BstV1I GCAGC 6 cut(s) 17, 82, 320, 391, 874, 970
BstV2I GAAGAC 1 cut(s) 972
BstX2I RGATCY 3 cut(s) 271, 343, 1048
BstYI RGATCY 3 cut(s) 271, 343, 1048
Bsu15I ATCGAT 1 cut(s) 556
Bsu36I CCTNAGG 1 cut(s) 160
BsuRI GGCC 1 cut(s) 693
BsuTUI ATCGAT 1 cut(s) 556
BtsCI GGATG 6 cut(s) 208, 637, 1015, 1207, 1278, 1327
BtsI GCAGTG 1 cut(s) 1198
BtsIMutI CAGTG 3 cut(s) 82, 195, 1198
BveI ACCTGC 2 cut(s) 62, 1279
Cac8I GCNNGC 3 cut(s) 55, 224, 691
CaiI CAGNNNCTG 2 cut(s) 104, 1052
Cfr13I GGNCC 3 cut(s) 692, 865, 1268
ClaI ATCGAT 1 cut(s) 556
Csp6I GTAC 2 cut(s) 758, 1141
CspCI CAANNNNNGTGG 2 cut(s) 541, 576
CviAII CATG 2 cut(s) 54, 614
CviQI GTAC 2 cut(s) 758, 1141
DdeI CTNAG 8 cut(s) 160, 166, 232, 301, 426, 609, 1305, 1312
DpnI GATC 4 cut(s) 273, 345, 1045, 1050
DpnII GATC 4 cut(s) 271, 343, 1043, 1048
DriI GACNNNNNGTC 1 cut(s) 296
Eam1104I CTCTTC 4 cut(s) 270, 329, 652, 909
Eam1105I GACNNNNNGTC 1 cut(s) 296
EarI CTCTTC 4 cut(s) 270, 329, 652, 909
EciI GGCGGA 1 cut(s) 192
Eco105I TACGTA 1 cut(s) 836
Eco24I GRGCYC 1 cut(s) 923
Eco31I GGTCTC 1 cut(s) 331
Eco47I GGWCC 2 cut(s) 865, 1268
Eco57I CTGAAG 4 cut(s) 508, 642, 827, 1098
Eco81I CCTNAGG 1 cut(s) 160
EcoNI CCTNNNNNAGG 2 cut(s) 69, 1170
EcoO109I RGGNCCY 2 cut(s) 865, 1268
EcoRII CCWGG 3 cut(s) 676, 694, 826
EcoT38I GRGCYC 1 cut(s) 923
FaeI CATG 2 cut(s) 57, 617
FalI AAGNNNNNCTT 4 cut(s) 954, 986, 1091, 1123
FaqI GGGAC 2 cut(s) 763, 1281
FatI CATG 2 cut(s) 53, 613
Fnu4HI GCNGC 8 cut(s) 6, 96, 306, 309, 405, 888, 984, 1071
FokI GGATG 6 cut(s) 215, 644, 1022, 1214, 1265, 1334
FriOI GRGCYC 1 cut(s) 923
Fsp4HI GCNGC 8 cut(s) 6, 96, 306, 309, 405, 888, 984, 1071
FspBI CTAG 3 cut(s) 327, 362, 704
GluI GCNGC 8 cut(s) 6, 96, 306, 309, 405, 888, 984, 1071
GsaI CCCAGC 1 cut(s) 1070
GsuI CTGGAG 3 cut(s) 699, 933, 1245
HaeIII GGCC 1 cut(s) 693
Hin1II CATG 2 cut(s) 57, 617
HincII GTYRAC 1 cut(s) 147
HindII GTYRAC 1 cut(s) 147
HinfI GANTC 4 cut(s) 115, 250, 712, 1162
HphI GGTGA 6 cut(s) 674, 721, 807, 811, 923, 1208
Hpy166II GTNNAC 3 cut(s) 77, 147, 443
Hpy188I TCNGA 5 cut(s) 47, 527, 1048, 1078, 1306
Hpy188III TCNNGA 7 cut(s) 18, 269, 275, 893, 937, 950, 1041
Hpy8I GTNNAC 3 cut(s) 77, 147, 443
HpyAV CCTTC 5 cut(s) 42, 369, 533, 569, 1010
HpyCH4III ACNGT 3 cut(s) 86, 199, 1036
HpyCH4IV ACGT 2 cut(s) 366, 835
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 104, 690, 989, 1079, 1352
HpyF3I CTNAG 8 cut(s) 160, 166, 232, 301, 426, 609, 1305, 1312
HpySE526I ACGT 2 cut(s) 366, 835
Hsp92II CATG 2 cut(s) 57, 617
Kzo9I GATC 4 cut(s) 271, 343, 1043, 1048
LguI GCTCTTC 2 cut(s) 270, 652
LmnI GCTCC 5 cut(s) 112, 182, 542, 952, 1226
Lsp1109I GCAGC 6 cut(s) 17, 82, 320, 391, 874, 970
LweI GCATC 2 cut(s) 730, 1192
MaeI CTAG 3 cut(s) 327, 362, 704
MaeII ACGT 2 cut(s) 366, 835
MaeIII GTNAC 3 cut(s) 481, 831, 1054
MalI GATC 4 cut(s) 273, 345, 1045, 1050
MboI GATC 4 cut(s) 271, 343, 1043, 1048
MflI RGATCY 3 cut(s) 271, 343, 1048
MhlI GDGCHC 4 cut(s) 79, 197, 610, 923
MluCI AATT 5 cut(s) 23, 352, 579, 942, 1298
MmeI TCCRAC 2 cut(s) 411, 609
MroXI GAANNNNTTC 1 cut(s) 254
MseI TTAA 6 cut(s) 29, 567, 804, 860, 1110, 1130
MspA1I CMGCKG 1 cut(s) 1070
MspR9I CCNGG 3 cut(s) 678, 696, 828
Mva1269I GAATGC 1 cut(s) 427
MvaI CCWGG 3 cut(s) 678, 696, 828
MwoI GCNNNNNNNGC 6 cut(s) 11, 104, 690, 989, 1079, 1352
NdeII GATC 4 cut(s) 271, 343, 1043, 1048
NlaIII CATG 2 cut(s) 57, 617
NlaIV GGNNCC 4 cut(s) 154, 273, 324, 1269
NspI RCATGY 1 cut(s) 57
NspV TTCGAA 1 cut(s) 128
PaeI GCATGC 1 cut(s) 57
PaqCI CACCTGC 1 cut(s) 62
PasI CCCWGGG 1 cut(s) 827
PciSI GCTCTTC 2 cut(s) 270, 652
PctI GAATGC 1 cut(s) 427
PdmI GAANNNNTTC 1 cut(s) 254
PfeI GAWTC 4 cut(s) 115, 250, 712, 1162
PkrI GCNGC 8 cut(s) 7, 97, 307, 310, 406, 889, 985, 1072
Ppu21I YACGTR 1 cut(s) 836
PpuMI RGGWCCY 2 cut(s) 865, 1268
PshBI ATTAAT 1 cut(s) 804
Psp5II RGGWCCY 2 cut(s) 865, 1268
Psp6I CCWGG 3 cut(s) 676, 694, 826
PspFI CCCAGC 1 cut(s) 1066
PspGI CCWGG 3 cut(s) 676, 694, 826
PspN4I GGNNCC 4 cut(s) 154, 273, 324, 1269
PspPI GGNCC 3 cut(s) 692, 865, 1268
PspPPI RGGWCCY 2 cut(s) 865, 1268
PsrI GAACNNNNNNTAC 4 cut(s) 474, 506, 750, 782
PstI CTGCAG 3 cut(s) 100, 751, 988
PstNI CAGNNNCTG 2 cut(s) 104, 1052
PsuI RGATCY 3 cut(s) 271, 343, 1048
RsaI GTAC 2 cut(s) 759, 1142
RsaNI GTAC 2 cut(s) 758, 1141
SapI GCTCTTC 2 cut(s) 270, 652
SaqAI TTAA 6 cut(s) 29, 567, 804, 860, 1110, 1130
SatI GCNGC 8 cut(s) 6, 96, 306, 309, 405, 888, 984, 1071
Sau3AI GATC 4 cut(s) 271, 343, 1043, 1048
Sau96I GGNCC 3 cut(s) 692, 865, 1268
ScrFI CCNGG 3 cut(s) 678, 696, 828
SduI GDGCHC 4 cut(s) 79, 197, 610, 923
SfaNI GCATC 2 cut(s) 730, 1192
SfcI CTRYAG 4 cut(s) 96, 393, 747, 984
SfuI TTCGAA 1 cut(s) 128
SinI GGWCC 2 cut(s) 865, 1268
SmlI CTYRAG 1 cut(s) 1090
SmoI CTYRAG 1 cut(s) 1090
SnaBI TACGTA 1 cut(s) 836
SphI GCATGC 1 cut(s) 57
Sse9I AATT 5 cut(s) 23, 352, 579, 942, 1298
SsiI CCGC 4 cut(s) 177, 306, 598, 1070
SspMI CTAG 3 cut(s) 327, 362, 704
StyD4I CCNGG 3 cut(s) 676, 694, 826
TaaI ACNGT 3 cut(s) 86, 199, 1036
TaiI ACGT 2 cut(s) 369, 838
TaqI TCGA 2 cut(s) 128, 556
TasI AATT 5 cut(s) 23, 352, 579, 942, 1298
TatI WGTACW 2 cut(s) 757, 1140
TauI GCSGC 2 cut(s) 308, 1073
TfiI GAWTC 4 cut(s) 115, 250, 712, 1162
Tru1I TTAA 6 cut(s) 29, 567, 804, 860, 1110, 1130
Tru9I TTAA 6 cut(s) 29, 567, 804, 860, 1110, 1130
TscAI CASTG 3 cut(s) 89, 202, 1198
TseI GCWGC 6 cut(s) 5, 95, 308, 404, 887, 983
TspDTI ATGAA 6 cut(s) 219, 639, 648, 758, 801, 912
TspGWI ACGGA 1 cut(s) 1324
TspRI CASTG 3 cut(s) 89, 202, 1198
VneI GTGCAC 1 cut(s) 75
VpaK11BI GGWCC 2 cut(s) 865, 1268
VspI ATTAAT 1 cut(s) 804
XagI CCTNNNNNAGG 2 cut(s) 69, 1170
XapI RAATTY 1 cut(s) 352
XceI RCATGY 1 cut(s) 57
XmnI GAANNNNTTC 1 cut(s) 254
XspI CTAG 3 cut(s) 327, 362, 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.