pycom10g23390

Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
25564303 .. 25569226
4924 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g23390.9

Sequence Viewer

Length: 1542 bp
ATGACTAGTCTGCTTAACAATTCTCAAGAAATTAATATCGAATTAATACCGACAAGAAGGCAAACCCACCTGTGCCATTTTACTACCCAATTGCCCCGCTCCTTCAATTTGCCGCCGCAACCCCGCCGTCCGTGCAGCTCTCTTTCCCTTCGGCTGCTCACTCACTACGAACTAGCCATGGCGGCAAGGGCTTCCATAAAATTGCTGAGAGACTTTTTGTTCAAAAGGGCATGCGCAGCTCCTGCTGCAAGTGCCAGACATTGTTCTTCTGCTGCTCAAACTGCTCCAAAGATTCCACATTTTTCGAAGAAAGGGAGGTTGTTGACGGCAGCCACCTTAGGCTTAGTTATCGGTGGCGGAGCTTATGTGAGCACTGTGGATGAAGCAACTTTCTGTGGCTGGCTATTCTCTGCTACAAAAATTGTGAATCCATTCTTCGCTCTTCTGGATGCTGAGACAGCTCACAGATTGGCTGTCTCAGCTGCAGCACGTGGTTGGGTACCTAGAGAGAAGAGACCAGATCCATCAAATTTAGGGCTAGAAGTTTGGGGAAGGAAGTTCTCCAACCCTATAGGTCTTGCTGCTGGCTTTGATAAGAATGCTGAAGCTGTTGATGGTTTGCTTGGTTTAGGCTTTGGATTTGTAGAGATTGGCTCTGTAACCCCTGTTCCACAAGAGGGCAATCCAAAGCCTCGTATCTTCAGATTGCGCGAGGAAGTAGCTATCATCAATCGATGTGGCTTTAATAGCGAGGGAATTGTAGCTGTTGCAAAGCGATTGGGTGCTCAGCACGGTAAGAGAAAGTTGGATGAAACTACAAGCTCATCTTCTTCAGGTGAAGAAGTCAAACCTGGAGGCAAAGCTGGCCCTGGCATACTAGGCGTGAATCTTGGGAAGAATAAGACAAGTGAAGATGCTTCTGCAGATTATAGACAAGGGGTTCATACATTGTCCCAGTACGCTGATTACTTGGTGATCAATGTTTCATCACCCAACACCCCTGGGTTACGTATGCTTCAGGGAAGAAAGCAGTTAAAGGACCTTGTGAAGCAGGTTCAAGGTGCTCGTGATGAAATGCAATGGGGTGAGGAGGGGCCTCCTCCATTGCTTGTGAAAATTGCTCCAGATTTGTCTAAAGAAGACCTTGAAGATATTGCTGCAGTTGCCCTTGCCCTTCGCTTGGACGGATTGATTATATCAAATACAACTGTTTCAAGACCAGAATCTGTTAGTAAACACCCGTTGGCTTCTGAAGCTGGTGGCTTGAGTGGGAAGCCACTTTTCGATATGTCTACCAATGTCATAAAGGAGATGTACATTTTGACAAGGGGAAAGATTCCCTTAATCGGGTGTGGGGGCATCAGCAGTGGCGAGGATGCTTACAAGAAAGTACGAGCCGGTGCAAGTCTTGTTCAGCTTTATACAGCATTTGCTTACGGGGGACCTGCTCTCATCCCCCAGATAAAGGCTGAATTGTCCGAGTGCTTAGAAAGGGATGGTTACAAGTCCATCAGTGAAGCAGTTGGTGCAGATTGCAGATGA

Protein Analysis

514

Amino Acids

55.0

Weight (kDa)

9.2

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 235
Acc36I ACCTGC 2 cut(s) 1042, 1453
Acc65I GGTACC 1 cut(s) 499
AccB1I GGYRCC 1 cut(s) 499
AccBSI CCGCTC 1 cut(s) 99
AccI GTMKAC 1 cut(s) 1292
AccII CGCG 1 cut(s) 711
AciI CCGC 6 cut(s) 97, 113, 116, 124, 182, 357
AclWI GGATC 1 cut(s) 515
AcsI RAATTY 1 cut(s) 529
AcuI CTGAAG 5 cut(s) 624, 685, 816, 1001, 1272
AcvI CACGTG 1 cut(s) 491
AfaI GTAC 4 cut(s) 501, 959, 1316, 1392
AfiI CCNNNNNNNGG 5 cut(s) 677, 1180, 1346, 1347, 1465
AgsI TTSAA 5 cut(s) 106, 223, 1058, 1148, 1215
AhlI ACTAGT 1 cut(s) 5
AjnI CCWGG 3 cut(s) 850, 868, 1000
Alw21I GWGCWC 3 cut(s) 374, 787, 1066
Alw26I GTCTC 4 cut(s) 204, 449, 481, 508
AlwI GGATC 1 cut(s) 515
AlwNI CAGNNNCTG 2 cut(s) 242, 1226
AoxI GGCC 2 cut(s) 865, 1094
ApoI RAATTY 1 cut(s) 529
AseI ATTAAT 2 cut(s) 33, 44
Asp700I GAANNNNTTC 1 cut(s) 431
Asp718I GGTACC 1 cut(s) 499
AspLEI GCGC 2 cut(s) 236, 711
AspS9I GGNCC 4 cut(s) 866, 1039, 1094, 1442
AsuHPI GGTGA 4 cut(s) 848, 981, 985, 1097
AsuII TTCGAA 1 cut(s) 305
AvaII GGWCC 2 cut(s) 1039, 1442
AxyI CCTNAGG 1 cut(s) 337
BanI GGYRCC 1 cut(s) 499
BauI CACGAG 1 cut(s) 1065
BbrPI CACGTG 1 cut(s) 491
BbsI GAAGAC 1 cut(s) 1146
Bbv12I GWGCWC 3 cut(s) 374, 787, 1066
BccI CCATC 4 cut(s) 532, 608, 1490, 1517
BceAI ACGGC 2 cut(s) 111, 342
BciT130I CCWGG 3 cut(s) 852, 870, 1002
BclI TGATCA 1 cut(s) 975
BcoDI GTCTC 4 cut(s) 204, 449, 481, 508
BcuI ACTAGT 1 cut(s) 5
BfaI CTAG 5 cut(s) 6, 173, 504, 539, 878
BfmI CTRYAG 4 cut(s) 483, 570, 921, 1158
BfuAI ACCTGC 2 cut(s) 1042, 1453
BglI GCCNNNNNGGC 1 cut(s) 182
BlpI GCTNAGC 1 cut(s) 786
Bme1390I CCNGG 3 cut(s) 852, 870, 1002
Bme18I GGWCC 2 cut(s) 1039, 1442
BmgT120I GGNCC 4 cut(s) 866, 1039, 1094, 1442
BmiI GGNNCC 3 cut(s) 501, 1095, 1443
BmrFI CCNGG 3 cut(s) 852, 870, 1002
BmrI ACTGGG 1 cut(s) 949
BmsI GCATC 4 cut(s) 439, 904, 1366, 1368
BmuI ACTGGG 1 cut(s) 949
BpiI GAAGAC 1 cut(s) 1146
BplI GAGNNNNNCTC 2 cut(s) 638, 670
BpmI CTGGAG 2 cut(s) 873, 1107
Bpu1102I GCTNAGC 1 cut(s) 786
Bpu14I TTCGAA 1 cut(s) 305
BpuEI CTTGAG 2 cut(s) 9, 1285
Bsa29I ATCGAT 1 cut(s) 733
BsaAI YACGTR 2 cut(s) 491, 1010
BsaI GGTCTC 1 cut(s) 508
BsaJI CCNNGG 4 cut(s) 177, 868, 1000, 1001
BsaXI ACNNNNNCTCC 2 cut(s) 351, 381
Bsc4I CCNNNNNNNGG 5 cut(s) 677, 1180, 1346, 1347, 1465
Bse118I RCCGGY 1 cut(s) 1397
Bse1I ACTGG 1 cut(s) 955
Bse21I CCTNAGG 1 cut(s) 337
Bse3DI GCAATG 2 cut(s) 1085, 1103
BseBI CCWGG 3 cut(s) 852, 870, 1002
BseCI ATCGAT 1 cut(s) 733
BseDI CCNNGG 4 cut(s) 177, 868, 1000, 1001
BseGI GGATG 6 cut(s) 385, 454, 814, 1381, 1452, 1501
BseLI CCNNNNNNNGG 5 cut(s) 677, 1180, 1346, 1347, 1465
BseMI GCAATG 2 cut(s) 1085, 1103
BseMII CTCAG 4 cut(s) 197, 444, 492, 800
BseNI ACTGG 1 cut(s) 955
BseRI GAGGAG 2 cut(s) 1089, 1103
BsgI GTGCAG 1 cut(s) 154
Bsh1236I CGCG 1 cut(s) 711
BshFI GGCC 2 cut(s) 867, 1096
BshNI GGYRCC 1 cut(s) 499
BshVI ATCGAT 1 cut(s) 733
BsiHKAI GWGCWC 3 cut(s) 374, 787, 1066
BsiSI CCGG 1 cut(s) 1398
BslFI GGGAC 2 cut(s) 937, 1455
BslI CCNNNNNNNGG 5 cut(s) 677, 1180, 1346, 1347, 1465
BsmAI GTCTC 4 cut(s) 204, 449, 481, 508
BsmFI GGGAC 2 cut(s) 937, 1455
BsmI GAATGC 1 cut(s) 604
BsnI GGCC 2 cut(s) 867, 1096
Bso31I GGTCTC 1 cut(s) 508
Bsp119I TTCGAA 1 cut(s) 305
Bsp1286I GDGCHC 3 cut(s) 374, 787, 1066
Bsp1407I TGTACA 1 cut(s) 1314
Bsp143I GATC 2 cut(s) 520, 975
Bsp1720I GCTNAGC 1 cut(s) 786
Bsp19I CCATGG 1 cut(s) 177
BspACI CCGC 6 cut(s) 97, 113, 116, 124, 182, 357
BspANI GGCC 2 cut(s) 867, 1096
BspCNI CTCAG 4 cut(s) 198, 445, 491, 799
BspDI ATCGAT 1 cut(s) 733
BspFNI CGCG 1 cut(s) 711
BspLI GGNNCC 3 cut(s) 501, 1095, 1443
BspMAI CTGCAG 3 cut(s) 487, 925, 1162
BspMI ACCTGC 2 cut(s) 1042, 1453
BspPI GGATC 1 cut(s) 515
BspQI GCTCTTC 1 cut(s) 447
BspT104I TTCGAA 1 cut(s) 305
BspT107I GGYRCC 1 cut(s) 499
BspTNI GGTCTC 1 cut(s) 508
BsrBI CCGCTC 1 cut(s) 99
BsrDI GCAATG 2 cut(s) 1085, 1103
BsrFI RCCGGY 1 cut(s) 1397
BsrGI TGTACA 1 cut(s) 1314
BsrI ACTGG 1 cut(s) 955
BssAI RCCGGY 1 cut(s) 1397
BssECI CCNNGG 4 cut(s) 177, 868, 1000, 1001
BssMI GATC 2 cut(s) 520, 975
BssSI CACGAG 1 cut(s) 1065
BssT1I CCWWGG 1 cut(s) 177
Bst2BI CACGAG 1 cut(s) 1065
Bst2UI CCWGG 3 cut(s) 852, 870, 1002
Bst4CI ACNGT 3 cut(s) 376, 794, 1210
Bst6I CTCTTC 2 cut(s) 447, 506
BstAPI GCANNNNNTGC 2 cut(s) 242, 1526
BstAUI TGTACA 1 cut(s) 1314
BstBAI YACGTR 2 cut(s) 491, 1010
BstBI TTCGAA 1 cut(s) 305
BstC8I GCNNGC 4 cut(s) 232, 401, 586, 865
BstDEI CTNAG 7 cut(s) 206, 337, 343, 453, 478, 786, 1486
BstDSI CCRYGG 1 cut(s) 177
BstF5I GGATG 6 cut(s) 385, 454, 814, 1381, 1452, 1501
BstFNI CGCG 1 cut(s) 711
BstHHI GCGC 2 cut(s) 236, 711
BstKTI GATC 2 cut(s) 523, 978
BstMAI GTCTC 4 cut(s) 204, 449, 481, 508
BstMBI GATC 2 cut(s) 520, 975
BstNI CCWGG 3 cut(s) 852, 870, 1002
BstNSI RCATGY 1 cut(s) 234
BstSCI CCNGG 3 cut(s) 850, 868, 1000
BstSFI CTRYAG 4 cut(s) 483, 570, 921, 1158
BstSNI TACGTA 1 cut(s) 1010
BstUI CGCG 1 cut(s) 711
BstV2I GAAGAC 1 cut(s) 1146
BstX2I RGATCY 1 cut(s) 520
BstYI RGATCY 1 cut(s) 520
Bsu15I ATCGAT 1 cut(s) 733
Bsu36I CCTNAGG 1 cut(s) 337
BsuRI GGCC 2 cut(s) 867, 1096
BsuTUI ATCGAT 1 cut(s) 733
BtgI CCRYGG 1 cut(s) 177
BtsCI GGATG 6 cut(s) 385, 454, 814, 1381, 1452, 1501
BtsI GCAGTG 1 cut(s) 1372
BtsIMutI CAGTG 3 cut(s) 372, 1372, 1519
BveI ACCTGC 2 cut(s) 1042, 1453
Cac8I GCNNGC 4 cut(s) 232, 401, 586, 865
CaiI CAGNNNCTG 2 cut(s) 242, 1226
CfoI GCGC 2 cut(s) 236, 711
Cfr10I RCCGGY 1 cut(s) 1397
Cfr13I GGNCC 4 cut(s) 866, 1039, 1094, 1442
ClaI ATCGAT 1 cut(s) 733
Csp6I GTAC 4 cut(s) 500, 958, 1315, 1391
CspCI CAANNNNNGTGG 2 cut(s) 718, 753
CviAII CATG 2 cut(s) 178, 231
CviQI GTAC 4 cut(s) 500, 958, 1315, 1391
DdeI CTNAG 7 cut(s) 206, 337, 343, 453, 478, 786, 1486
DpnI GATC 2 cut(s) 522, 977
DpnII GATC 2 cut(s) 520, 975
Eam1104I CTCTTC 2 cut(s) 447, 506
EarI CTCTTC 2 cut(s) 447, 506
EciI GGCGGA 1 cut(s) 372
Eco105I TACGTA 1 cut(s) 1010
Eco130I CCWWGG 1 cut(s) 177
Eco31I GGTCTC 1 cut(s) 508
Eco47I GGWCC 2 cut(s) 1039, 1442
Eco57I CTGAAG 5 cut(s) 624, 685, 816, 1001, 1272
Eco72I CACGTG 1 cut(s) 491
Eco81I CCTNAGG 1 cut(s) 337
EcoO109I RGGNCCY 3 cut(s) 1039, 1094, 1442
EcoRII CCWGG 3 cut(s) 850, 868, 1000
EcoT14I CCWWGG 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 2 cut(s) 181, 234
FalI AAGNNNNNCTT 6 cut(s) 811, 843, 1128, 1160, 1325, 1357
FaqI GGGAC 2 cut(s) 937, 1455
FatI CATG 2 cut(s) 177, 230
FauI CCCGC 2 cut(s) 104, 131
FbaI TGATCA 1 cut(s) 975
FblI GTMKAC 1 cut(s) 1292
FokI GGATG 6 cut(s) 392, 461, 821, 1388, 1439, 1508
FspBI CTAG 5 cut(s) 6, 173, 504, 539, 878
FspI TGCGCA 1 cut(s) 235
GlaI GCGC 2 cut(s) 235, 710
GsuI CTGGAG 2 cut(s) 873, 1107
HaeIII GGCC 2 cut(s) 867, 1096
HapII CCGG 1 cut(s) 1398
HhaI GCGC 2 cut(s) 236, 711
Hin1II CATG 2 cut(s) 181, 234
Hin6I GCGC 2 cut(s) 234, 709
HinP1I GCGC 2 cut(s) 234, 709
HincII GTYRAC 1 cut(s) 324
HindII GTYRAC 1 cut(s) 324
HinfI GANTC 5 cut(s) 292, 427, 886, 1223, 1336
HpaII CCGG 1 cut(s) 1398
HphI GGTGA 4 cut(s) 848, 981, 985, 1097
Hpy166II GTNNAC 3 cut(s) 324, 1235, 1293
Hpy188I TCNGA 3 cut(s) 704, 1252, 1480
Hpy188III TCNNGA 5 cut(s) 26, 446, 1067, 1124, 1215
Hpy8I GTNNAC 3 cut(s) 324, 1235, 1293
HpyAV CCTTC 5 cut(s) 51, 112, 158, 546, 1184
HpyCH4III ACNGT 3 cut(s) 376, 794, 1210
HpyCH4IV ACGT 2 cut(s) 490, 1009
HpyF3I CTNAG 7 cut(s) 206, 337, 343, 453, 478, 786, 1486
HpySE526I ACGT 2 cut(s) 490, 1009
Hsp92II CATG 2 cut(s) 181, 234
HspAI GCGC 2 cut(s) 234, 709
KpnI GGTACC 1 cut(s) 503
Ksp22I TGATCA 1 cut(s) 975
Kzo9I GATC 2 cut(s) 520, 975
LguI GCTCTTC 1 cut(s) 447
LmnI GCTCC 5 cut(s) 104, 244, 289, 359, 1126
LweI GCATC 4 cut(s) 439, 904, 1366, 1368
MaeI CTAG 5 cut(s) 6, 173, 504, 539, 878
MaeII ACGT 2 cut(s) 490, 1009
MaeIII GTNAC 3 cut(s) 658, 1005, 1499
MalI GATC 2 cut(s) 522, 977
MbiI CCGCTC 1 cut(s) 99
MboI GATC 2 cut(s) 520, 975
MfeI CAATTG 1 cut(s) 89
MflI RGATCY 1 cut(s) 520
MhlI GDGCHC 3 cut(s) 374, 787, 1066
MmeI TCCRAC 2 cut(s) 588, 786
MroXI GAANNNNTTC 1 cut(s) 431
MseI TTAA 6 cut(s) 15, 33, 44, 744, 1034, 1343
MspA1I CMGCKG 1 cut(s) 482
MspI CCGG 1 cut(s) 1398
MspR9I CCNGG 3 cut(s) 852, 870, 1002
MunI CAATTG 1 cut(s) 89
Mva1269I GAATGC 1 cut(s) 604
MvaI CCWGG 3 cut(s) 852, 870, 1002
MvnI CGCG 1 cut(s) 711
NcoI CCATGG 1 cut(s) 177
NdeII GATC 2 cut(s) 520, 975
NlaIII CATG 2 cut(s) 181, 234
NlaIV GGNNCC 3 cut(s) 501, 1095, 1443
NsbI TGCGCA 1 cut(s) 235
NspI RCATGY 1 cut(s) 234
NspV TTCGAA 1 cut(s) 305
PaeI GCATGC 1 cut(s) 234
PasI CCCWGGG 1 cut(s) 1001
PciSI GCTCTTC 1 cut(s) 447
PctI GAATGC 1 cut(s) 604
PdmI GAANNNNTTC 1 cut(s) 431
PfeI GAWTC 5 cut(s) 292, 427, 886, 1223, 1336
PmaCI CACGTG 1 cut(s) 491
PmlI CACGTG 1 cut(s) 491
Ppu21I YACGTR 2 cut(s) 491, 1010
PpuMI RGGWCCY 2 cut(s) 1039, 1442
PshBI ATTAAT 2 cut(s) 33, 44
Psp5II RGGWCCY 2 cut(s) 1039, 1442
Psp6I CCWGG 3 cut(s) 850, 868, 1000
PspCI CACGTG 1 cut(s) 491
PspGI CCWGG 3 cut(s) 850, 868, 1000
PspN4I GGNNCC 3 cut(s) 501, 1095, 1443
PspPI GGNCC 4 cut(s) 866, 1039, 1094, 1442
PspPPI RGGWCCY 2 cut(s) 1039, 1442
PsrI GAACNNNNNNTAC 2 cut(s) 651, 683
PstI CTGCAG 3 cut(s) 487, 925, 1162
PstNI CAGNNNCTG 2 cut(s) 242, 1226
PsuI RGATCY 1 cut(s) 520
PvuII CAGCTG 1 cut(s) 482
RsaI GTAC 4 cut(s) 501, 959, 1316, 1392
RsaNI GTAC 4 cut(s) 500, 958, 1315, 1391
SapI GCTCTTC 1 cut(s) 447
SaqAI TTAA 6 cut(s) 15, 33, 44, 744, 1034, 1343
Sau3AI GATC 2 cut(s) 520, 975
Sau96I GGNCC 4 cut(s) 866, 1039, 1094, 1442
ScrFI CCNGG 3 cut(s) 852, 870, 1002
SduI GDGCHC 3 cut(s) 374, 787, 1066
SfaNI GCATC 4 cut(s) 439, 904, 1366, 1368
SfcI CTRYAG 4 cut(s) 483, 570, 921, 1158
SfuI TTCGAA 1 cut(s) 305
SinI GGWCC 2 cut(s) 1039, 1442
SmlI CTYRAG 2 cut(s) 24, 1264
SmoI CTYRAG 2 cut(s) 24, 1264
SnaBI TACGTA 1 cut(s) 1010
SpeI ACTAGT 1 cut(s) 5
SphI GCATGC 1 cut(s) 234
SsiI CCGC 6 cut(s) 97, 113, 116, 124, 182, 357
SspMI CTAG 5 cut(s) 6, 173, 504, 539, 878
StyD4I CCNGG 3 cut(s) 850, 868, 1000
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 3 cut(s) 376, 794, 1210
TaiI ACGT 2 cut(s) 493, 1012
TaqI TCGA 4 cut(s) 39, 305, 733, 1284
TatI WGTACW 1 cut(s) 1314
TauI GCSGC 3 cut(s) 115, 118, 185
TfiI GAWTC 5 cut(s) 292, 427, 886, 1223, 1336
Tru1I TTAA 6 cut(s) 15, 33, 44, 744, 1034, 1343
Tru9I TTAA 6 cut(s) 15, 33, 44, 744, 1034, 1343
TscAI CASTG 3 cut(s) 379, 1372, 1519
TspDTI ATGAA 5 cut(s) 396, 825, 932, 975, 1086
TspGWI ACGGA 2 cut(s) 120, 1200
TspRI CASTG 3 cut(s) 379, 1372, 1519
VpaK11BI GGWCC 2 cut(s) 1039, 1442
VspI ATTAAT 2 cut(s) 33, 44
XapI RAATTY 1 cut(s) 529
XceI RCATGY 1 cut(s) 234
XmiI GTMKAC 1 cut(s) 1292
XmnI GAANNNNTTC 1 cut(s) 431
XspI CTAG 5 cut(s) 6, 173, 504, 539, 878
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.