Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004775

Physical Location & Seq

Genomic Coordinates Reverse (-)

28773410 .. 28775098

Gene Structure 1689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g27900.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGCTTCAGGGAAGAAAGCAGTTAAGGGACCTTGTGAAGCAGGTTCAAGGTGCTCGTGACGAAATGCAATGGGGTGAGGAGGGTCCTCCTCCATTGCTTGTGAAAATTGCTCCAGATTTGTCTAAAGAGGACCTTGAAGATATTGCTGCAGTTGCCCTTGCCCTTCGCTTGGACGGATTGATTATATCAAATACAACTGTTTCAAGACCAGAATCTGTTCGTAAACACCTGGTGGCTTCTGAAGCTGGTGGCTTGAGTGGGAAGCCACTTTTCGATATGTCTACCAATGTCTTAAAGGAGATGTACATTTTGACGAGGGGAAAGATTCCTTTAATTGGGTGTGGAGGCGTTAGCAGTGGTGAGGATGCTTACAAGAAAGTACGAGCTGGTGCGAGTCTTGTTCAGCTTTATACAGCATTTGCTTACGGGGGACCTGCTCTCATCCCCCAGATAAAGGCTGAATTGTCCGAGTGCTTAGAAAGGGATGGTTACAAGTCCATCAGTGAAGCAGTTGGTGCAGATTGCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004152 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006220 GO:0006221 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009165 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016491 GO:0016627 GO:0016635 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0055086 GO:0055114 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

DHO_dh

Protein Analysis

177

Amino Acids

18.9

Weight (kDa)

5.93

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23300
fragaria_vesca	FvH4_3g07800 FvH4_3g07800 FvH4_3g07800
malus_domestica	MD05G1301200.v1.1 MD10G1280100.v1.1
prunus_persica	Prupe.4G061300_v2.0.a1 Prupe.6G003700_v2.0.a1 Prupe.6G003700_v2.0.a1 Prupe.6G003700_v2.0.a1
pyrus_communis	pycom05g27900 pycom10g23390
rosa_chinensis	RchiOBHm_Chr5g0010781 RchiOBHm_Chr5g0050031 RchiOBHm_Chr5g0064321
rosa_laevigata	RLG00000031779
rosa_multiflora	Rmu_sc0000109.1_g000020
rosa_roxburghii	Rroxscaffold_1G00065600
rosa_rugosa	Rorug04G0424400 Rorug04G0424500 Rorug04G0452200 Rorug04G0452300 Rorug04G0452400 Rorug06G0421900
rosa_samantha	Rh5AG084600 Rh5BG340700 Rh5CG092100 Rh5DG079500 Rh5DG353400
rosa_wichuraiana	Rw0G000560 Rw0G022270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	31, 442
AccI	GTMKAC	1 cut(s)	281
AcuI	CTGAAG	1 cut(s)	261
AdeI	CACNNNGTG	1 cut(s)	232
AfaI	GTAC	2 cut(s)	305, 381
AfiI	CCNNNNNNNGG	3 cut(s)	169, 335, 454
AgsI	TTSAA	3 cut(s)	47, 137, 204
AjnI	CCWGG	1 cut(s)	228
AluBI	AGCT	3 cut(s)	245, 386, 406
AluI	AGCT	3 cut(s)	245, 386, 406
Alw21I	GWGCWC	1 cut(s)	55
AlwNI	CAGNNNCTG	1 cut(s)	215
ApeKI	GCWGC	1 cut(s)	146
Asp700I	GAANNNNTTC	1 cut(s)	216
AspS9I	GGNCC	4 cut(s)	28, 83, 130, 431
AsuHPI	GGTGA	2 cut(s)	86, 371
AvaII	GGWCC	4 cut(s)	28, 83, 130, 431
BauI	CACGAG	1 cut(s)	54
Bbv12I	GWGCWC	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	2 cut(s)	479, 506
BciT130I	CCWGG	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	147
BfuAI	ACCTGC	2 cut(s)	31, 442
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme1390I	CCNGG	1 cut(s)	230
Bme18I	GGWCC	4 cut(s)	28, 83, 130, 431
BmgT120I	GGNCC	4 cut(s)	28, 83, 130, 431
BmiI	GGNNCC	3 cut(s)	29, 84, 432
BmrFI	CCNGG	1 cut(s)	230
BmsI	GCATC	1 cut(s)	355
BpmI	CTGGAG	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	274
Bsc4I	CCNNNNNNNGG	3 cut(s)	169, 335, 454
Bse3DI	GCAATG	2 cut(s)	74, 92
BseBI	CCWGG	1 cut(s)	230
BseGI	GGATG	3 cut(s)	370, 441, 490
BseLI	CCNNNNNNNGG	3 cut(s)	169, 335, 454
BseMI	GCAATG	2 cut(s)	74, 92
BseRI	GAGGAG	2 cut(s)	78, 92
BseXI	GCAGC	1 cut(s)	133
BsiHKAI	GWGCWC	1 cut(s)	55
BslFI	GGGAC	2 cut(s)	41, 444
BslI	CCNNNNNNNGG	3 cut(s)	169, 335, 454
BsmFI	GGGAC	2 cut(s)	41, 444
Bsp1286I	GDGCHC	1 cut(s)	55
Bsp1407I	TGTACA	1 cut(s)	303
BspLI	GGNNCC	3 cut(s)	29, 84, 432
BspMAI	CTGCAG	1 cut(s)	151
BspMI	ACCTGC	2 cut(s)	31, 442
BsrDI	GCAATG	2 cut(s)	74, 92
BsrGI	TGTACA	1 cut(s)	303
BssSI	CACGAG	1 cut(s)	54
Bst2BI	CACGAG	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	230
Bst4CI	ACNGT	1 cut(s)	199
BstAPI	GCANNNNNTGC	1 cut(s)	515
BstAUI	TGTACA	1 cut(s)	303
BstDEI	CTNAG	1 cut(s)	475
BstF5I	GGATG	3 cut(s)	370, 441, 490
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 242, 515
BstNI	CCWGG	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	228
BstSFI	CTRYAG	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	133
BtsCI	GGATG	3 cut(s)	370, 441, 490
BtsI	GCAGTG	1 cut(s)	361
BtsIMutI	CAGTG	2 cut(s)	361, 508
BveI	ACCTGC	2 cut(s)	31, 442
CaiI	CAGNNNCTG	1 cut(s)	215
Cfr13I	GGNCC	4 cut(s)	28, 83, 130, 431
CsiI	ACCWGGT	1 cut(s)	228
Csp6I	GTAC	2 cut(s)	304, 380
CviJI	RGCY	7 cut(s)	236, 245, 252, 265, 386, 406, 458
CviKI_1	RGCY	7 cut(s)	236, 245, 252, 265, 386, 406, 458
CviQI	GTAC	2 cut(s)	304, 380
DdeI	CTNAG	1 cut(s)	475
DraIII	CACNNNGTG	1 cut(s)	232
Eco47I	GGWCC	4 cut(s)	28, 83, 130, 431
Eco57I	CTGAAG	1 cut(s)	261
EcoO109I	RGGNCCY	4 cut(s)	28, 83, 130, 431
EcoRII	CCWGG	1 cut(s)	228
FaiI	YATR	3 cut(s)	185, 278, 411
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FaqI	GGGAC	2 cut(s)	41, 444
FblI	GTMKAC	1 cut(s)	281
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	3 cut(s)	377, 428, 497
Fsp4HI	GCNGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	147
GsuI	CTGGAG	1 cut(s)	96
HinfI	GANTC	3 cut(s)	212, 325, 394
HphI	GGTGA	2 cut(s)	86, 371
Hpy166II	GTNNAC	2 cut(s)	224, 282
Hpy188I	TCNGA	2 cut(s)	241, 469
Hpy188III	TCNNGA	3 cut(s)	56, 113, 204
Hpy8I	GTNNAC	2 cut(s)	224, 282
HpyAV	CCTTC	1 cut(s)	173
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	4 cut(s)	67, 149, 518, 525
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 242, 515
HpyF3I	CTNAG	1 cut(s)	475
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	9 cut(s)	26, 126, 215, 222, 231, 242, 372, 447, 461
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	1 cut(s)	355
MabI	ACCWGGT	1 cut(s)	228
MaeIII	GTNAC	2 cut(s)	56, 488
MboII	GAAGA	2 cut(s)	24, 149
MhlI	GDGCHC	1 cut(s)	55
MluCI	AATT	3 cut(s)	105, 333, 461
MlyI	GAGTC	1 cut(s)	403
MnlI	CCTC	8 cut(s)	70, 73, 96, 99, 121, 309, 338, 355
MroXI	GAANNNNTTC	1 cut(s)	216
MseI	TTAA	3 cut(s)	23, 293, 332
MspR9I	CCNGG	1 cut(s)	230
MvaI	CCWGG	1 cut(s)	230
MwoI	GCNNNNNNNGC	3 cut(s)	152, 242, 515
NlaIV	GGNNCC	3 cut(s)	29, 84, 432
NmuCI	GTSAC	1 cut(s)	56
PdmI	GAANNNNTTC	1 cut(s)	216
PfeI	GAWTC	2 cut(s)	212, 325
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	1 cut(s)	402
PpsI	GAGTC	1 cut(s)	402
PpuMI	RGGWCCY	4 cut(s)	28, 83, 130, 431
Psp5II	RGGWCCY	4 cut(s)	28, 83, 130, 431
Psp6I	CCWGG	1 cut(s)	228
PspGI	CCWGG	1 cut(s)	228
PspN4I	GGNNCC	3 cut(s)	29, 84, 432
PspPI	GGNCC	4 cut(s)	28, 83, 130, 431
PspPPI	RGGWCCY	4 cut(s)	28, 83, 130, 431
PstI	CTGCAG	1 cut(s)	151
PstNI	CAGNNNCTG	1 cut(s)	215
RsaI	GTAC	2 cut(s)	305, 381
RsaNI	GTAC	2 cut(s)	304, 380
SaqAI	TTAA	3 cut(s)	23, 293, 332
SatI	GCNGC	1 cut(s)	147
Sau96I	GGNCC	4 cut(s)	28, 83, 130, 431
SchI	GAGTC	1 cut(s)	403
ScrFI	CCNGG	1 cut(s)	230
SduI	GDGCHC	1 cut(s)	55
SetI	ASST	9 cut(s)	33, 45, 52, 135, 231, 247, 388, 408, 436
SexAI	ACCWGGT	1 cut(s)	228
SfaNI	GCATC	1 cut(s)	355
SfcI	CTRYAG	1 cut(s)	147
SinI	GGWCC	4 cut(s)	28, 83, 130, 431
SmlI	CTYRAG	1 cut(s)	253
SmoI	CTYRAG	1 cut(s)	253
Sse9I	AATT	3 cut(s)	105, 333, 461
StyD4I	CCNGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	199
TaqI	TCGA	1 cut(s)	273
TasI	AATT	3 cut(s)	105, 333, 461
TatI	WGTACW	1 cut(s)	303
TfiI	GAWTC	2 cut(s)	212, 325
Tru1I	TTAA	3 cut(s)	23, 293, 332
Tru9I	TTAA	3 cut(s)	23, 293, 332
TscAI	CASTG	2 cut(s)	361, 508
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	56
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	2 cut(s)	361, 508
VpaK11BI	GGWCC	4 cut(s)	28, 83, 130, 431
XmiI	GTMKAC	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.