Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004775

Physical Location & Seq

Genomic Coordinates Forward (+)

49036121 .. 49041278

Gene Structure 5158 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG353400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAAGAAGTTACAAAGTTCAGAAGAAGGTCCTGGCTGGAGCTATGGAAGAGGTAAAGTCCTTTTATCTTCTGTGATTAATGTTTCATCACTCAACACCCCCGGGCTACGTATGCTTCAAGGAAGAAAGCAGTTAAAGGTCCTTGTGAAGAAGGTACAAGCTGCTCGTGATGAAATGCAATGGGGTGAAGAAGGCCCTCCTCCATTGCTCGTGAAAATTGCTCCAGATTTGTCTAAAGAAGATCTCGAAGATATTGCTGCAATATGTATATATATGCTTGTGGCCCTTGCCCTTCGCTTGGACGGATTGATTATATCAAACACAACTGTTTCAAGAACAGAGTCTGTTAGTAGAAACCCAGTGGCTTCTGAAGCTGGTGGCTTGAGTGGGAAACCACTATTTGATACCTCTACCAGACTCTTAAAGGATATGTACCTGTTGACAAGGGTGGCAGGGTTGCTTCATTTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004152 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006220 GO:0006221 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009165 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016491 GO:0016627 GO:0016635 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0055086 GO:0055114 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

DHO_dh

Protein Analysis

157

Amino Acids

17.15

Weight (kDa)

9.3

Isoelectric Point (pI)

39.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHO_dh	PF01180	25 - 148	3.4e-21	Dihydroorotate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23300
fragaria_vesca	FvH4_3g07800 FvH4_3g07800 FvH4_3g07800
malus_domestica	MD05G1301200.v1.1 MD10G1280100.v1.1
prunus_persica	Prupe.4G061300_v2.0.a1 Prupe.6G003700_v2.0.a1 Prupe.6G003700_v2.0.a1 Prupe.6G003700_v2.0.a1
pyrus_communis	pycom05g27900 pycom10g23390
rosa_chinensis	RchiOBHm_Chr5g0010781 RchiOBHm_Chr5g0050031 RchiOBHm_Chr5g0064321
rosa_laevigata	RLG00000031779
rosa_multiflora	Rmu_sc0000109.1_g000020
rosa_roxburghii	Rroxscaffold_1G00065600
rosa_rugosa	Rorug04G0424400 Rorug04G0424500 Rorug04G0452200 Rorug04G0452300 Rorug04G0452400 Rorug06G0421900
rosa_samantha	Rh5AG084600 Rh5BG340700 Rh5CG092100 Rh5DG079500 Rh5DG353400
rosa_wichuraiana	Rw0G000560 Rw0G022270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	390
AfaI	GTAC	2 cut(s)	156, 434
AfiI	CCNNNNNNNGG	1 cut(s)	298
AgsI	TTSAA	2 cut(s)	119, 333
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	3 cut(s)	42, 161, 374
AluI	AGCT	3 cut(s)	42, 161, 374
AlwNI	CAGNNNCTG	1 cut(s)	344
Ama87I	CYCGRG	1 cut(s)	101
AoxI	GGCC	2 cut(s)	193, 282
ApeKI	GCWGC	2 cut(s)	161, 257
AseI	ATTAAT	1 cut(s)	78
AspS9I	GGNCC	4 cut(s)	29, 139, 194, 283
AsuC2I	CCSGG	2 cut(s)	102, 103
AsuHPI	GGTGA	1 cut(s)	197
AvaI	CYCGRG	1 cut(s)	101
AvaII	GGWCC	2 cut(s)	29, 139
BauI	CACGAG	2 cut(s)	165, 209
BbvI	GCAGC	2 cut(s)	148, 244
BcgI	CGANNNNNNTGC	2 cut(s)	236, 270
BciT130I	CCWGG	1 cut(s)	33
BcnI	CCSGG	2 cut(s)	102, 103
BglII	AGATCT	1 cut(s)	241
BisI	GCNGC	2 cut(s)	162, 258
BlsI	GCNGC	2 cut(s)	163, 259
Bme1390I	CCNGG	3 cut(s)	33, 102, 103
Bme18I	GGWCC	2 cut(s)	29, 139
BmeT110I	CYCGRG	1 cut(s)	101
BmgT120I	GGNCC	4 cut(s)	29, 139, 194, 283
BmrFI	CCNGG	3 cut(s)	33, 102, 103
BmrI	ACTGGG	1 cut(s)	353
BmuI	ACTGGG	1 cut(s)	353
BpmI	CTGGAG	2 cut(s)	58, 207
BpuEI	CTTGAG	1 cut(s)	403
BpuMI	CCSGG	2 cut(s)	102, 103
BsaAI	YACGTR	1 cut(s)	110
BsaJI	CCNNGG	2 cut(s)	100, 101
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse1I	ACTGG	1 cut(s)	359
Bse3DI	GCAATG	2 cut(s)	185, 203
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	2 cut(s)	100, 101
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMI	GCAATG	2 cut(s)	185, 203
BseNI	ACTGG	1 cut(s)	359
BseRI	GAGGAG	1 cut(s)	189
BseXI	GCAGC	2 cut(s)	148, 244
BshFI	GGCC	2 cut(s)	195, 284
BsiHKCI	CYCGRG	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	102
BslI	CCNNNNNNNGG	1 cut(s)	298
BsnI	GGCC	2 cut(s)	195, 284
BsoBI	CYCGRG	1 cut(s)	101
Bsp143I	GATC	1 cut(s)	241
BspANI	GGCC	2 cut(s)	195, 284
BsrDI	GCAATG	2 cut(s)	185, 203
BsrI	ACTGG	1 cut(s)	359
BssECI	CCNNGG	2 cut(s)	100, 101
BssMI	GATC	1 cut(s)	241
BssSI	CACGAG	2 cut(s)	165, 209
Bst2BI	CACGAG	2 cut(s)	165, 209
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	1 cut(s)	328
Bst6I	CTCTTC	1 cut(s)	43
BstBAI	YACGTR	1 cut(s)	110
BstKTI	GATC	1 cut(s)	244
BstMBI	GATC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 371
BstNI	CCWGG	1 cut(s)	33
BstSCI	CCNGG	3 cut(s)	31, 100, 101
BstSNI	TACGTA	1 cut(s)	110
BstV1I	GCAGC	2 cut(s)	148, 244
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BsuRI	GGCC	2 cut(s)	195, 284
BtsIMutI	CAGTG	1 cut(s)	366
CaiI	CAGNNNCTG	1 cut(s)	344
Cfr13I	GGNCC	4 cut(s)	29, 139, 194, 283
Cfr9I	CCCGGG	1 cut(s)	101
Csp6I	GTAC	2 cut(s)	155, 433
CviJI	RGCY	9 cut(s)	36, 42, 106, 161, 195, 284, 365, 374, 381
CviKI_1	RGCY	9 cut(s)	36, 42, 106, 161, 195, 284, 365, 374, 381
CviQI	GTAC	2 cut(s)	155, 433
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
Eco105I	TACGTA	1 cut(s)	110
Eco47I	GGWCC	2 cut(s)	29, 139
Eco57I	CTGAAG	1 cut(s)	390
Eco88I	CYCGRG	1 cut(s)	101
EcoO109I	RGGNCCY	3 cut(s)	29, 139, 194
EcoRII	CCWGG	1 cut(s)	31
FaiI	YATR	9 cut(s)	45, 113, 265, 269, 271, 273, 275, 314, 431
Fnu4HI	GCNGC	2 cut(s)	162, 258
Fsp4HI	GCNGC	2 cut(s)	162, 258
GluI	GCNGC	2 cut(s)	162, 258
GsuI	CTGGAG	2 cut(s)	58, 207
HaeIII	GGCC	2 cut(s)	195, 284
HapII	CCGG	1 cut(s)	102
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HinfI	GANTC	2 cut(s)	341, 417
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	1 cut(s)	441
Hpy188I	TCNGA	3 cut(s)	22, 370, 473
Hpy188III	TCNNGA	5 cut(s)	167, 211, 224, 245, 333
Hpy8I	GTNNAC	1 cut(s)	441
HpyAV	CCTTC	4 cut(s)	20, 145, 185, 302
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	2 cut(s)	178, 260
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 371
HpySE526I	ACGT	1 cut(s)	109
Kzo9I	GATC	1 cut(s)	241
LmnI	GCTCC	2 cut(s)	39, 226
Lsp1109I	GCAGC	2 cut(s)	148, 244
MaeII	ACGT	1 cut(s)	109
MaeIII	GTNAC	1 cut(s)	9
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MflI	RGATCY	1 cut(s)	241
MluCI	AATT	1 cut(s)	216
MlyI	GAGTC	2 cut(s)	350, 411
MnlI	CCTC	4 cut(s)	44, 207, 210, 418
MseI	TTAA	3 cut(s)	78, 134, 422
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	3 cut(s)	33, 102, 103
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	112, 371
NciI	CCSGG	2 cut(s)	102, 103
NdeII	GATC	1 cut(s)	241
PkrI	GCNGC	2 cut(s)	163, 259
PleI	GAGTC	2 cut(s)	349, 411
PpsI	GAGTC	2 cut(s)	349, 411
Ppu21I	YACGTR	1 cut(s)	110
PpuMI	RGGWCCY	2 cut(s)	29, 139
PshBI	ATTAAT	1 cut(s)	78
Psp5II	RGGWCCY	2 cut(s)	29, 139
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspPI	GGNCC	4 cut(s)	29, 139, 194, 283
PspPPI	RGGWCCY	2 cut(s)	29, 139
PstNI	CAGNNNCTG	1 cut(s)	344
PsuI	RGATCY	1 cut(s)	241
RsaI	GTAC	2 cut(s)	156, 434
RsaNI	GTAC	2 cut(s)	155, 433
SaqAI	TTAA	3 cut(s)	78, 134, 422
SatI	GCNGC	2 cut(s)	162, 258
Sau3AI	GATC	1 cut(s)	241
Sau96I	GGNCC	4 cut(s)	29, 139, 194, 283
SchI	GAGTC	2 cut(s)	350, 411
ScrFI	CCNGG	3 cut(s)	33, 102, 103
SinI	GGWCC	2 cut(s)	29, 139
SmaI	CCCGGG	1 cut(s)	103
SmlI	CTYRAG	1 cut(s)	382
SmoI	CTYRAG	1 cut(s)	382
SnaBI	TACGTA	1 cut(s)	110
Sse9I	AATT	1 cut(s)	216
StyD4I	CCNGG	3 cut(s)	31, 100, 101
TaaI	ACNGT	1 cut(s)	328
TaiI	ACGT	1 cut(s)	112
TaqI	TCGA	1 cut(s)	246
TasI	AATT	1 cut(s)	216
Tru1I	TTAA	3 cut(s)	78, 134, 422
Tru9I	TTAA	3 cut(s)	78, 134, 422
TscAI	CASTG	1 cut(s)	366
TseI	GCWGC	2 cut(s)	161, 257
TspDTI	ATGAA	4 cut(s)	17, 75, 186, 452
TspGWI	ACGGA	1 cut(s)	318
TspMI	CCCGGG	1 cut(s)	101
TspRI	CASTG	1 cut(s)	366
VpaK11BI	GGWCC	2 cut(s)	29, 139
VspI	ATTAAT	1 cut(s)	78
XmaI	CCCGGG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.