Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004775

Physical Location & Seq

Genomic Coordinates Forward (+)

48271742 .. 48276505

Gene Structure 4764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG340700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGCTTCAAGGAAGAAAGCAGTTAAAGGTCCTTGTGAAGAAGGTACAAGCTGCTCGTGATGAAATGCAATGGGGTGAAGAAGGCCCTCCTCCATTGCTCGTGAAAATTGCTCCAGATTTGTCTAAAGAAGATCTCGAAGATATTGCTGCAATATGTATATATATGCTTGTGGCCCTTGCCCTTCGCTTGGACGGATTGATTATATCAAACACAACTGTTTCAAGAACAGAGTCTGTTAGTAGAAACCCAGTGGCTTCTGAAGCTGGTGGCTTGAGTGGGAAACCACTATTTGATACCTCTACCAGACTCTTAAAGGATATGTACCTGTTGACAAGGGGGAAGATTCCTTTAGTAGGGTGTGGGGGTATTAATAGGATGATGATGGTTGCTAGAAATTTCTTGATGTGGCAGGGTTGCTTCATTTCTTCTGAGGTTGCTGCATTGGCTTTGAGGTATATTCTGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004152 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006220 GO:0006221 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009165 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016491 GO:0016627 GO:0016635 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0055086 GO:0055114 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

DHO_dh

Protein Analysis

155

Amino Acids

17.09

Weight (kDa)

9.07

Isoelectric Point (pI)

31.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHO_dh	PF01180	3 - 124	1.8e-20	Dihydroorotate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23300
fragaria_vesca	FvH4_3g07800 FvH4_3g07800 FvH4_3g07800
malus_domestica	MD05G1301200.v1.1 MD10G1280100.v1.1
prunus_persica	Prupe.4G061300_v2.0.a1 Prupe.6G003700_v2.0.a1 Prupe.6G003700_v2.0.a1 Prupe.6G003700_v2.0.a1
pyrus_communis	pycom05g27900 pycom10g23390
rosa_chinensis	RchiOBHm_Chr5g0010781 RchiOBHm_Chr5g0050031 RchiOBHm_Chr5g0064321
rosa_laevigata	RLG00000031779
rosa_multiflora	Rmu_sc0000109.1_g000020
rosa_roxburghii	Rroxscaffold_1G00065600
rosa_rugosa	Rorug04G0424400 Rorug04G0424500 Rorug04G0452200 Rorug04G0452300 Rorug04G0452400 Rorug06G0421900
rosa_samantha	Rh5AG084600 Rh5BG340700 Rh5CG092100 Rh5DG079500 Rh5DG353400
rosa_wichuraiana	Rw0G000560 Rw0G022270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	394
AcuI	CTGAAG	1 cut(s)	279
AfaI	GTAC	2 cut(s)	45, 323
AfiI	CCNNNNNNNGG	2 cut(s)	187, 353
AgsI	TTSAA	2 cut(s)	8, 222
AluBI	AGCT	2 cut(s)	50, 263
AluI	AGCT	2 cut(s)	50, 263
AlwNI	CAGNNNCTG	1 cut(s)	233
AoxI	GGCC	2 cut(s)	82, 171
ApeKI	GCWGC	3 cut(s)	50, 146, 437
ApoI	RAATTY	1 cut(s)	394
AseI	ATTAAT	1 cut(s)	369
AspS9I	GGNCC	3 cut(s)	28, 83, 172
AsuHPI	GGTGA	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	28
BauI	CACGAG	2 cut(s)	54, 98
BbvI	GCAGC	3 cut(s)	37, 133, 424
BccI	CCATC	1 cut(s)	376
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BfaI	CTAG	1 cut(s)	390
BglII	AGATCT	1 cut(s)	130
BisI	GCNGC	3 cut(s)	51, 147, 438
BlsI	GCNGC	3 cut(s)	52, 148, 439
Bme18I	GGWCC	1 cut(s)	28
BmgT120I	GGNCC	3 cut(s)	28, 83, 172
BmrI	ACTGGG	1 cut(s)	242
BmuI	ACTGGG	1 cut(s)	242
BpmI	CTGGAG	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	292
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 353
Bse1I	ACTGG	1 cut(s)	248
Bse3DI	GCAATG	2 cut(s)	74, 92
BseGI	GGATG	1 cut(s)	381
BseLI	CCNNNNNNNGG	2 cut(s)	187, 353
BseMI	GCAATG	2 cut(s)	74, 92
BseMII	CTCAG	1 cut(s)	420
BseNI	ACTGG	1 cut(s)	248
BseRI	GAGGAG	1 cut(s)	78
BseXI	GCAGC	3 cut(s)	37, 133, 424
BshFI	GGCC	2 cut(s)	84, 173
BslI	CCNNNNNNNGG	2 cut(s)	187, 353
BsnI	GGCC	2 cut(s)	84, 173
Bsp143I	GATC	1 cut(s)	130
BspANI	GGCC	2 cut(s)	84, 173
BspCNI	CTCAG	1 cut(s)	421
BsrDI	GCAATG	2 cut(s)	74, 92
BsrI	ACTGG	1 cut(s)	248
BssMI	GATC	1 cut(s)	130
BssSI	CACGAG	2 cut(s)	54, 98
Bst2BI	CACGAG	2 cut(s)	54, 98
Bst4CI	ACNGT	1 cut(s)	217
BstDEI	CTNAG	1 cut(s)	429
BstENI	CCTNNNNNAGG	1 cut(s)	351
BstF5I	GGATG	1 cut(s)	381
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 443
BstV1I	GCAGC	3 cut(s)	37, 133, 424
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
BsuRI	GGCC	2 cut(s)	84, 173
BtsCI	GGATG	1 cut(s)	381
BtsIMutI	CAGTG	1 cut(s)	255
CaiI	CAGNNNCTG	1 cut(s)	233
Cfr13I	GGNCC	3 cut(s)	28, 83, 172
Csp6I	GTAC	2 cut(s)	44, 322
CviJI	RGCY	7 cut(s)	50, 84, 173, 254, 263, 270, 446
CviKI_1	RGCY	7 cut(s)	50, 84, 173, 254, 263, 270, 446
CviQI	GTAC	2 cut(s)	44, 322
DdeI	CTNAG	1 cut(s)	429
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	279
EcoNI	CCTNNNNNAGG	1 cut(s)	351
EcoO109I	RGGNCCY	2 cut(s)	28, 83
FaiI	YATR	8 cut(s)	154, 158, 160, 162, 164, 203, 320, 456
Fnu4HI	GCNGC	3 cut(s)	51, 147, 438
FokI	GGATG	1 cut(s)	388
Fsp4HI	GCNGC	3 cut(s)	51, 147, 438
FspBI	CTAG	1 cut(s)	390
GluI	GCNGC	3 cut(s)	51, 147, 438
GsuI	CTGGAG	1 cut(s)	96
HaeIII	GGCC	2 cut(s)	84, 173
HincII	GTYRAC	1 cut(s)	330
HindII	GTYRAC	1 cut(s)	330
HinfI	GANTC	3 cut(s)	230, 306, 343
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	1 cut(s)	330
Hpy188I	TCNGA	2 cut(s)	259, 430
Hpy188III	TCNNGA	6 cut(s)	56, 100, 113, 134, 222, 400
Hpy8I	GTNNAC	1 cut(s)	330
HpyAV	CCTTC	3 cut(s)	34, 74, 191
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4V	TGCA	3 cut(s)	67, 149, 440
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 443
HpyF3I	CTNAG	1 cut(s)	429
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	6 cut(s)	126, 249, 261, 316, 338, 395
Lsp1109I	GCAGC	3 cut(s)	37, 133, 424
MaeI	CTAG	1 cut(s)	390
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	7 cut(s)	24, 49, 89, 140, 149, 352, 417
MflI	RGATCY	1 cut(s)	130
MluCI	AATT	2 cut(s)	105, 394
MlyI	GAGTC	2 cut(s)	239, 300
MnlI	CCTC	5 cut(s)	96, 99, 307, 424, 444
MseI	TTAA	3 cut(s)	23, 311, 369
MwoI	GCNNNNNNNGC	2 cut(s)	260, 443
NdeII	GATC	1 cut(s)	130
PfeI	GAWTC	1 cut(s)	343
PkrI	GCNGC	3 cut(s)	52, 148, 439
PleI	GAGTC	2 cut(s)	238, 300
PpsI	GAGTC	2 cut(s)	238, 300
PpuMI	RGGWCCY	1 cut(s)	28
PshBI	ATTAAT	1 cut(s)	369
Psp5II	RGGWCCY	1 cut(s)	28
PspPI	GGNCC	3 cut(s)	28, 83, 172
PspPPI	RGGWCCY	1 cut(s)	28
PstNI	CAGNNNCTG	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	130
RsaI	GTAC	2 cut(s)	45, 323
RsaNI	GTAC	2 cut(s)	44, 322
SaqAI	TTAA	3 cut(s)	23, 311, 369
SatI	GCNGC	3 cut(s)	51, 147, 438
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	3 cut(s)	28, 83, 172
SchI	GAGTC	2 cut(s)	239, 300
SetI	ASST	8 cut(s)	30, 45, 52, 265, 299, 327, 435, 455
SinI	GGWCC	1 cut(s)	28
SmlI	CTYRAG	1 cut(s)	271
SmoI	CTYRAG	1 cut(s)	271
Sse9I	AATT	2 cut(s)	105, 394
SspMI	CTAG	1 cut(s)	390
TaaI	ACNGT	1 cut(s)	217
TaqI	TCGA	1 cut(s)	135
TasI	AATT	2 cut(s)	105, 394
TfiI	GAWTC	1 cut(s)	343
Tru1I	TTAA	3 cut(s)	23, 311, 369
Tru9I	TTAA	3 cut(s)	23, 311, 369
TscAI	CASTG	1 cut(s)	255
TseI	GCWGC	3 cut(s)	50, 146, 437
TspDTI	ATGAA	2 cut(s)	75, 409
TspGWI	ACGGA	1 cut(s)	207
TspRI	CASTG	1 cut(s)	255
VpaK11BI	GGWCC	1 cut(s)	28
VspI	ATTAAT	1 cut(s)	369
XagI	CCTNNNNNAGG	1 cut(s)	351
XapI	RAATTY	1 cut(s)	394
XspI	CTAG	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.