Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007146

Physical Location & Seq

Genomic Coordinates Reverse (-)

8410184 .. 8412512

Gene Structure 2329 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G24580.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGGAGAAGAAGTAAAACCAGAGGCAAAGGAGGCAGCCTCTGCTCCACAGGCCGTCCCCGCTGAGGAGGAGGAGAAGAAGAAAGATGTAGCGGAGGAGAAGAAAGTGGCGGCTGAGGAGGAGAAACCAAAGGAGGAAGAGGAGCCGCAACCACCACCACCGCCTCCACCCTTCATACTCTACGTCGACTTGCATTGTGTTGGATGCGCTAAGAAGATTGAAAGATCTATTCTAAAAATTAGAGGTGTGGAAGAAGTGGTGATGGATATGAATGAGAACCAAGTGACGATAAAGGGAGTGTTGGATCCGCAAGCAGTGTGCAACAAAATCAAGAAGAAGACTAAAAGAATGGCCAAAGTCCTCTCGCCGCTTCCGGCAGCTGAGGGAGAGCCTCTGCCACCAATCATAACCTCTCAGGTCTCCGGCGGCCTCACCACCGTCGAGCTCAGCGTTAACATGCACTGCCAAGCTTGTGCTGACCAGCTCAAGAAGAAGATTCTCAAAATGAGAGGGGTCCAAACAACTGTGACAGAGCACACCACGGGAAAAGTAATAGTGACTGGGACAATGGACGCTGAGAAGCTTGTGGATTACGTCTACCGTCGGACCAAAAAGCAAGCCCGAATCGTACCCCAACCTGACCCGGAACCTGAAGCCCCCGCGGCCGCGCAGGAAGAAAAGAAGGAGGAGAGCGGTGAAGGCAATGAAAAACCACCAGAGACCGGAGAGGAAAAGGAAGAAGAGAAGAAGAAGGAGGGAGAGGAAAATGGAGAGGAAGGTGGTGGAGAAGAGGCGGCGGCTACGGAGGAAGAGAGACGAGACAATGAAATGACGGCTATGGCCCAAGAAGAAGGGATGAAGAGGATGATGTATTACTATCAACCTTCATACGTCATAGAGAGGATTCCTCCGCCGCAGCTTTTTAGCGACGAGAACCCTAATGCTTGTTGCATTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko04978 map04978

Pfam Domains

Protein Families

HMA

Protein Analysis

319

Amino Acids

35.35

Weight (kDa)

4.88

Isoelectric Point (pI)

66.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	62 - 112	6.8e-08	Heavy-metal-associated domain
HMA	PF00403	147 - 193	1.2e-08	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24580 AT5G24580 AT5G24580 AT5G24580 AT5G24580
fragaria_vesca	FvH4_7g33060
malus_domestica	MD01G1229700.v1.1 MD07G1301700.v1.1
prunus_persica	Prupe.2G320300_v2.0.a1
pyrus_communis	pycom01g23780 pycom07g27450
rosa_chinensis	RchiOBHm_Chr1g0330391 RchiOBHm_Chr1g0383071
rosa_laevigata	RLG00000026135
rosa_multiflora	Rmu_sc0000634.1_g000006 Rmu_sc0008563.1_g000016 Rmu_sc0033623.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277640
rosa_rugosa	Rorug01G0438100
rosa_samantha	Rh1AG463800 Rh1BG421000 Rh1CG434500 Rh1DG453600
rosa_wichuraiana	Rw1G008460 Rw1G040840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	693
AccI	GTMKAC	2 cut(s)	186, 597
AccII	CGCG	2 cut(s)	662, 668
AclWI	GGATC	2 cut(s)	299, 312
AcoI	YGGCCR	2 cut(s)	351, 663
AcuI	CTGAAG	1 cut(s)	672
AfaI	GTAC	1 cut(s)	630
AfiI	CCNNNNNNNGG	2 cut(s)	64, 722
AgsI	TTSAA	1 cut(s)	221
AluBI	AGCT	6 cut(s)	380, 445, 470, 484, 583, 919
AluI	AGCT	6 cut(s)	380, 445, 470, 484, 583, 919
Alw21I	GWGCWC	2 cut(s)	447, 537
Alw26I	GTCTC	4 cut(s)	424, 713, 808, 813
AlwI	GGATC	2 cut(s)	299, 312
AlwNI	CAGNNNCTG	1 cut(s)	41
AoxI	GGCC	5 cut(s)	51, 351, 427, 663, 840
ApeKI	GCWGC	3 cut(s)	35, 377, 916
AspLEI	GCGC	2 cut(s)	209, 670
AspS9I	GGNCC	3 cut(s)	514, 606, 841
AsuC2I	CCSGG	1 cut(s)	644
AsuHPI	GGTGA	3 cut(s)	271, 424, 707
AvaII	GGWCC	2 cut(s)	514, 606
BalI	TGGCCA	1 cut(s)	353
BamHI	GGATCC	1 cut(s)	304
BanII	GRGCYC	1 cut(s)	447
BbsI	GAAGAC	1 cut(s)	344
Bbv12I	GWGCWC	2 cut(s)	447, 537
BbvCI	CCTCAGC	3 cut(s)	63, 114, 381
BbvI	GCAGC	3 cut(s)	47, 389, 928
BccI	CCATC	1 cut(s)	256
BceAI	ACGGC	2 cut(s)	38, 849
BcnI	CCSGG	1 cut(s)	644
BcoDI	GTCTC	4 cut(s)	424, 713, 808, 813
BglI	GCCNNNNNGGC	1 cut(s)	662
BglII	AGATCT	1 cut(s)	224
BlpI	GCTNAGC	1 cut(s)	446
Bme1390I	CCNGG	1 cut(s)	644
Bme18I	GGWCC	2 cut(s)	514, 606
BmgT120I	GGNCC	3 cut(s)	514, 606, 841
BmiI	GGNNCC	4 cut(s)	144, 306, 515, 648
BmrFI	CCNGG	1 cut(s)	644
BmrI	ACTGGG	1 cut(s)	570
BmsI	GCATC	1 cut(s)	194
BmuI	ACTGGG	1 cut(s)	570
BpiI	GAAGAC	1 cut(s)	344
BplI	GAGNNNNNCTC	4 cut(s)	23, 55, 892, 924
Bpu10I	CCTNAGC	3 cut(s)	63, 114, 381
Bpu1102I	GCTNAGC	1 cut(s)	446
BpuEI	CTTGAG	1 cut(s)	470
BpuMI	CCSGG	1 cut(s)	644
BsaI	GGTCTC	2 cut(s)	424, 713
BsaJI	CCNNGG	2 cut(s)	540, 660
BsaWI	WCCGGW	1 cut(s)	722
BsaXI	ACNNNNNCTCC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 722
Bse1I	ACTGG	1 cut(s)	565
Bse3DI	GCAATG	1 cut(s)	709
BseDI	CCNNGG	2 cut(s)	540, 660
BseGI	GGATG	3 cut(s)	209, 861, 870
BseLI	CCNNNNNNNGG	2 cut(s)	64, 722
BseMI	GCAATG	1 cut(s)	709
BseMII	CTCAG	6 cut(s)	54, 105, 372, 428, 460, 567
BseNI	ACTGG	1 cut(s)	565
BseRI	GAGGAG	8 cut(s)	80, 83, 86, 110, 131, 134, 155, 701
BseX3I	CGGCCG	1 cut(s)	663
BseXI	GCAGC	3 cut(s)	47, 389, 928
Bsh1236I	CGCG	2 cut(s)	662, 668
Bsh1285I	CGRYCG	1 cut(s)	666
BshFI	GGCC	5 cut(s)	53, 353, 429, 665, 842
BsiEI	CGRYCG	1 cut(s)	666
BsiHKAI	GWGCWC	2 cut(s)	447, 537
BsiSI	CCGG	4 cut(s)	374, 423, 644, 723
BslFI	GGGAC	2 cut(s)	41, 577
BslI	CCNNNNNNNGG	2 cut(s)	64, 722
BsmAI	GTCTC	4 cut(s)	424, 713, 808, 813
BsmBI	CGTCTC	1 cut(s)	808
BsmFI	GGGAC	2 cut(s)	41, 577
BsnI	GGCC	5 cut(s)	53, 353, 429, 665, 842
Bso31I	GGTCTC	2 cut(s)	424, 713
Bsp1286I	GDGCHC	2 cut(s)	447, 537
Bsp143I	GATC	2 cut(s)	224, 304
Bsp1720I	GCTNAGC	1 cut(s)	446
BspANI	GGCC	5 cut(s)	53, 353, 429, 665, 842
BspCNI	CTCAG	6 cut(s)	55, 106, 373, 427, 459, 568
BspFNI	CGCG	2 cut(s)	662, 668
BspLI	GGNNCC	4 cut(s)	144, 306, 515, 648
BspPI	GGATC	2 cut(s)	299, 312
BspTNI	GGTCTC	2 cut(s)	424, 713
BsrBI	CCGCTC	1 cut(s)	693
BsrDI	GCAATG	1 cut(s)	709
BsrI	ACTGG	1 cut(s)	565
BssECI	CCNNGG	2 cut(s)	540, 660
BssMI	GATC	2 cut(s)	224, 304
Bst4CI	ACNGT	3 cut(s)	439, 526, 602
Bst6I	CTCTTC	5 cut(s)	132, 735, 783, 804, 854
BstAPI	GCANNNNNTGC	1 cut(s)	41
BstC8I	GCNNGC	2 cut(s)	312, 618
BstDEI	CTNAG	7 cut(s)	63, 114, 210, 381, 414, 446, 576
BstDSI	CCRYGG	2 cut(s)	540, 660
BstF5I	GGATG	3 cut(s)	209, 861, 870
BstFNI	CGCG	2 cut(s)	662, 668
BstHHI	GCGC	2 cut(s)	209, 670
BstKTI	GATC	2 cut(s)	227, 307
BstMAI	GTCTC	4 cut(s)	424, 713, 808, 813
BstMBI	GATC	2 cut(s)	224, 304
BstMCI	CGRYCG	1 cut(s)	666
BstMWI	GCNNNNNNNGC	6 cut(s)	32, 41, 50, 59, 662, 699
BstNSI	RCATGY	1 cut(s)	460
BstSCI	CCNGG	1 cut(s)	642
BstUI	CGCG	2 cut(s)	662, 668
BstV1I	GCAGC	3 cut(s)	47, 389, 928
BstV2I	GAAGAC	1 cut(s)	344
BstX2I	RGATCY	2 cut(s)	224, 304
BstYI	RGATCY	2 cut(s)	224, 304
BstZI	CGGCCG	1 cut(s)	663
BsuRI	GGCC	5 cut(s)	53, 353, 429, 665, 842
BtgI	CCRYGG	2 cut(s)	540, 660
BtsCI	GGATG	3 cut(s)	209, 861, 870
BtsI	GCAGTG	2 cut(s)	321, 460
BtsIMutI	CAGTG	2 cut(s)	321, 460
Cac8I	GCNNGC	2 cut(s)	312, 618
CaiI	CAGNNNCTG	1 cut(s)	41
CciNI	GCGGCCGC	1 cut(s)	663
CfoI	GCGC	2 cut(s)	209, 670
Cfr13I	GGNCC	3 cut(s)	514, 606, 841
Cfr42I	CCGCGG	1 cut(s)	663
CseI	GACGC	1 cut(s)	581
Csp6I	GTAC	1 cut(s)	629
CviAII	CATG	1 cut(s)	457
CviQI	GTAC	1 cut(s)	629
DdeI	CTNAG	7 cut(s)	63, 114, 210, 381, 414, 446, 576
DpnI	GATC	2 cut(s)	226, 306
DpnII	GATC	2 cut(s)	224, 304
EaeI	YGGCCR	2 cut(s)	351, 663
EagI	CGGCCG	1 cut(s)	663
Eam1104I	CTCTTC	5 cut(s)	132, 735, 783, 804, 854
EarI	CTCTTC	5 cut(s)	132, 735, 783, 804, 854
EciI	GGCGGA	1 cut(s)	900
Ecl136II	GAGCTC	1 cut(s)	445
EclXI	CGGCCG	1 cut(s)	663
Eco24I	GRGCYC	1 cut(s)	447
Eco31I	GGTCTC	2 cut(s)	424, 713
Eco47I	GGWCC	2 cut(s)	514, 606
Eco52I	CGGCCG	1 cut(s)	663
Eco53kI	GAGCTC	1 cut(s)	445
Eco57I	CTGAAG	1 cut(s)	672
EcoICRI	GAGCTC	1 cut(s)	445
EcoT38I	GRGCYC	1 cut(s)	447
Esp3I	CGTCTC	1 cut(s)	808
FaeI	CATG	1 cut(s)	460
FaiI	YATR	7 cut(s)	176, 269, 407, 458, 839, 889, 896
FaqI	GGGAC	2 cut(s)	41, 577
FatI	CATG	1 cut(s)	456
FauI	CCCGC	2 cut(s)	67, 667
FblI	GTMKAC	2 cut(s)	186, 597
FokI	GGATG	3 cut(s)	216, 868, 877
FriOI	GRGCYC	1 cut(s)	447
GlaI	GCGC	2 cut(s)	208, 669
HaeIII	GGCC	5 cut(s)	53, 353, 429, 665, 842
HapII	CCGG	4 cut(s)	374, 423, 644, 723
HgaI	GACGC	1 cut(s)	581
HhaI	GCGC	2 cut(s)	209, 670
Hin1II	CATG	1 cut(s)	460
Hin6I	GCGC	2 cut(s)	207, 668
HinP1I	GCGC	2 cut(s)	207, 668
HincII	GTYRAC	2 cut(s)	187, 454
HindII	GTYRAC	2 cut(s)	187, 454
HindIII	AAGCTT	2 cut(s)	468, 581
HinfI	GANTC	3 cut(s)	496, 624, 904
HpaI	GTTAAC	1 cut(s)	454
HpaII	CCGG	4 cut(s)	374, 423, 644, 723
HphI	GGTGA	3 cut(s)	271, 424, 707
Hpy166II	GTNNAC	3 cut(s)	187, 454, 598
Hpy188I	TCNGA	1 cut(s)	606
Hpy188III	TCNNGA	2 cut(s)	331, 487
Hpy8I	GTNNAC	3 cut(s)	187, 454, 598
Hpy99I	CGWCG	4 cut(s)	188, 443, 606, 932
HpyAV	CCTTC	7 cut(s)	181, 676, 692, 745, 770, 845, 894
HpyCH4III	ACNGT	3 cut(s)	439, 526, 602
HpyCH4IV	ACGT	3 cut(s)	183, 594, 891
HpyCH4V	TGCA	4 cut(s)	193, 321, 460, 951
HpyF10VI	GCNNNNNNNGC	6 cut(s)	32, 41, 50, 59, 662, 699
HpyF3I	CTNAG	7 cut(s)	63, 114, 210, 381, 414, 446, 576
HpySE526I	ACGT	3 cut(s)	183, 594, 891
Hsp92II	CATG	1 cut(s)	460
HspAI	GCGC	2 cut(s)	207, 668
KspAI	GTTAAC	1 cut(s)	454
KspI	CCGCGG	1 cut(s)	663
Kzo9I	GATC	2 cut(s)	224, 304
LmnI	GCTCC	2 cut(s)	49, 142
Lsp1109I	GCAGC	3 cut(s)	47, 389, 928
LweI	GCATC	1 cut(s)	194
MaeII	ACGT	3 cut(s)	183, 594, 891
MaeIII	GTNAC	3 cut(s)	283, 526, 556
MalI	GATC	2 cut(s)	226, 306
MbiI	CCGCTC	1 cut(s)	693
MboI	GATC	2 cut(s)	224, 304
MflI	RGATCY	2 cut(s)	224, 304
MhlI	GDGCHC	2 cut(s)	447, 537
MlsI	TGGCCA	1 cut(s)	353
MluCI	AATT	1 cut(s)	237
MluNI	TGGCCA	1 cut(s)	353
MmeI	TCCRAC	3 cut(s)	181, 282, 584
Mox20I	TGGCCA	1 cut(s)	353
MscI	TGGCCA	1 cut(s)	353
MseI	TTAA	2 cut(s)	453, 958
Msp20I	TGGCCA	1 cut(s)	353
MspA1I	CMGCKG	3 cut(s)	62, 380, 662
MspI	CCGG	4 cut(s)	374, 423, 644, 723
MspR9I	CCNGG	1 cut(s)	644
MvnI	CGCG	2 cut(s)	662, 668
MwoI	GCNNNNNNNGC	6 cut(s)	32, 41, 50, 59, 662, 699
NciI	CCSGG	1 cut(s)	644
NdeII	GATC	2 cut(s)	224, 304
NlaIII	CATG	1 cut(s)	460
NlaIV	GGNNCC	4 cut(s)	144, 306, 515, 648
NmuCI	GTSAC	3 cut(s)	283, 526, 556
NotI	GCGGCCGC	1 cut(s)	663
NspI	RCATGY	1 cut(s)	460
PcsI	WCGNNNNNNNCGW	1 cut(s)	447
PfeI	GAWTC	3 cut(s)	496, 624, 904
Psp124BI	GAGCTC	1 cut(s)	447
PspN4I	GGNNCC	4 cut(s)	144, 306, 515, 648
PspPI	GGNCC	3 cut(s)	514, 606, 841
PstNI	CAGNNNCTG	1 cut(s)	41
PsuI	RGATCY	2 cut(s)	224, 304
PvuII	CAGCTG	1 cut(s)	380
RsaI	GTAC	1 cut(s)	630
RsaNI	GTAC	1 cut(s)	629
SacI	GAGCTC	1 cut(s)	447
SacII	CCGCGG	1 cut(s)	663
SalI	GTCGAC	1 cut(s)	185
SaqAI	TTAA	2 cut(s)	453, 958
Sau3AI	GATC	2 cut(s)	224, 304
Sau96I	GGNCC	3 cut(s)	514, 606, 841
ScrFI	CCNGG	1 cut(s)	644
SduI	GDGCHC	2 cut(s)	447, 537
SfaNI	GCATC	1 cut(s)	194
Sfr303I	CCGCGG	1 cut(s)	663
SgrBI	CCGCGG	1 cut(s)	663
SinI	GGWCC	2 cut(s)	514, 606
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
Sse9I	AATT	1 cut(s)	237
SstI	GAGCTC	1 cut(s)	447
StyD4I	CCNGG	1 cut(s)	642
TaaI	ACNGT	3 cut(s)	439, 526, 602
TaiI	ACGT	3 cut(s)	186, 597, 894
TaqI	TCGA	2 cut(s)	186, 441
TasI	AATT	1 cut(s)	237
TauI	GCSGC	9 cut(s)	113, 148, 370, 429, 665, 668, 797, 800, 916
TfiI	GAWTC	3 cut(s)	496, 624, 904
Tru1I	TTAA	2 cut(s)	453, 958
Tru9I	TTAA	2 cut(s)	453, 958
TscAI	CASTG	2 cut(s)	321, 467
TseFI	GTSAC	3 cut(s)	283, 526, 556
TseI	GCWGC	3 cut(s)	35, 377, 916
Tsp45I	GTSAC	3 cut(s)	283, 526, 556
TspDTI	ATGAA	6 cut(s)	163, 284, 720, 840, 872, 876
TspGWI	ACGGA	1 cut(s)	818
TspRI	CASTG	2 cut(s)	321, 467
VpaK11BI	GGWCC	2 cut(s)	514, 606
XceI	RCATGY	1 cut(s)	460
XmiI	GTMKAC	2 cut(s)	186, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.