Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0007146

Physical Location & Seq

Genomic Coordinates Forward (+)

982605 .. 984478

Gene Structure 1874 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00277640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGGTGAAGAAACTAAGCCGGAAGAAGCTAAGGTAGAGGAGGTTAAGCCAGAAGAGAATGCAGAGGAGAAAGCAGAAGAGAAGAAAGAAGAGAAGGCAGAGGACGAGGAGAAGGAAGAGCCAAAACCACCAGCTCCTTTTGTCCTATTTGTGGACTTGCATTGTGTGGGGTGCGCAAAGAAAATTGAGAGGTCTATCATGAAAATTAGAGGGGTGGAAGGGGTTGTGATAGACATGGCTAAGAATGAAGTGACCATAAAGGGAATAGTGGAGCCTCAAGCAGTGTGCAACAAAATCATGAAAAGAACCAAGAGAAAGGCTCAAGTCTTGTCCCCATTACCAGCTGCTGAGGGTGACCCTATTCCAGAAGTTGTTGCTTCTCAGGTCAGTGGAGTAACAACTGTGGAACTCCAAGTTAACATGCACTGTGAGGCCTGTGCAGAACAACTTAAGAAAAAGATACTCAAAATGAGAGGGGTTCAAAATGCCGTGACTGATCATACTAGCGGGAAGGTGACCGTGACGGGGACAATGGACGGCGACAAACTAGTAGACTACGTTTACAGACGAACCAGAAAACAAGCCAAAATCGTACCACAACCGGAGCCTGAACCCGAGAAGAAAGAAGAACCTGCGGCGGAGAAGCCAGCCGAAGAAGCAAAGCCGGAAGAGAATGCGGAGAAGAAAGAGGAGGAAAAGACCGCAGAAGAGGCAGAGAAAGAAGAAGGTGGCGGTGGAGAAAGTAATAAAGAGGGTGAGGAAAAGAAAGAGGAGGAGACCAAGATTGAAGAGCACAACGACGTCGTTAATGGTATACCGGAGGAGGAATTGAAGAGGATGGTGCAGCACTATTATCAGCCGCTTTACGTGTTTGAGAGAATCCCGCCGCCGCAGCTCTTCAGCGATGAGAATCCAAATGCATGTTGCATTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko04978 map04978

Pfam Domains

Protein Families

HMA

Protein Analysis

311

Amino Acids

34.85

Weight (kDa)

4.9

Isoelectric Point (pI)

62.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	49 - 92	1.1e-10	Heavy-metal-associated domain
HMA	PF00403	138 - 181	7.3e-10	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24580 AT5G24580 AT5G24580 AT5G24580 AT5G24580
fragaria_vesca	FvH4_7g33060
malus_domestica	MD01G1229700.v1.1 MD07G1301700.v1.1
prunus_persica	Prupe.2G320300_v2.0.a1
pyrus_communis	pycom01g23780 pycom07g27450
rosa_chinensis	RchiOBHm_Chr1g0330391 RchiOBHm_Chr1g0383071
rosa_laevigata	RLG00000026135
rosa_multiflora	Rmu_sc0000634.1_g000006 Rmu_sc0008563.1_g000016 Rmu_sc0033623.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277640
rosa_rugosa	Rorug01G0438100
rosa_samantha	Rh1AG463800 Rh1BG421000 Rh1CG434500 Rh1DG453600
rosa_wichuraiana	Rw1G008460 Rw1G040840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	804
Acc16I	TGCGCA	1 cut(s)	175
Acc36I	ACCTGC	1 cut(s)	640
AccI	GTMKAC	2 cut(s)	552, 814
AcuI	CTGAAG	1 cut(s)	883
AcyI	GRCGYC	1 cut(s)	801
AfaI	GTAC	1 cut(s)	594
AfiI	CCNNNNNNNGG	2 cut(s)	151, 525
AflII	CTTAAG	1 cut(s)	449
AflIII	ACRYGT	1 cut(s)	867
AgsI	TTSAA	3 cut(s)	482, 788, 832
AhlI	ACTAGT	1 cut(s)	547
AluBI	AGCT	4 cut(s)	29, 134, 344, 895
AluI	AGCT	4 cut(s)	29, 134, 344, 895
Alw21I	GWGCWC	1 cut(s)	795
Alw26I	GTCTC	1 cut(s)	770
AlwNI	CAGNNNCTG	1 cut(s)	347
Ama87I	CYCGRG	1 cut(s)	614
AoxI	GGCC	1 cut(s)	432
ApeKI	GCWGC	3 cut(s)	344, 844, 892
AspLEI	GCGC	1 cut(s)	176
AsuHPI	GGTGA	4 cut(s)	17, 365, 526, 767
AvaI	CYCGRG	1 cut(s)	614
Bbv12I	GWGCWC	1 cut(s)	795
BbvCI	CCTCAGC	1 cut(s)	348
BbvI	GCAGC	3 cut(s)	331, 856, 904
BccI	CCATC	1 cut(s)	832
BceAI	ACGGC	2 cut(s)	473, 553
BclI	TGATCA	1 cut(s)	496
BcoDI	GTCTC	1 cut(s)	770
BcuI	ACTAGT	1 cut(s)	547
BfaI	CTAG	2 cut(s)	504, 548
BfrI	CTTAAG	1 cut(s)	449
BfuAI	ACCTGC	1 cut(s)	640
BisI	GCNGC	7 cut(s)	345, 636, 845, 860, 887, 890, 893
BlsI	GCNGC	7 cut(s)	346, 637, 846, 861, 888, 891, 894
BmeT110I	CYCGRG	1 cut(s)	614
BmiI	GGNNCC	2 cut(s)	273, 606
BplI	GAGNNNNNCTC	2 cut(s)	304, 336
Bpu10I	CCTNAGC	2 cut(s)	30, 348
BpuEI	CTTGAG	2 cut(s)	261, 306
BsaAI	YACGTR	1 cut(s)	868
BsaBI	GATNNNNATC	1 cut(s)	909
BsaHI	GRCGYC	1 cut(s)	801
BsaI	GGTCTC	1 cut(s)	770
BsaWI	WCCGGW	2 cut(s)	601, 817
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 525
Bse8I	GATNNNNATC	1 cut(s)	909
BseGI	GGATG	1 cut(s)	843
BseJI	GATNNNNATC	1 cut(s)	909
BseLI	CCNNNNNNNGG	2 cut(s)	151, 525
BseMII	CTCAG	2 cut(s)	339, 395
BseRI	GAGGAG	7 cut(s)	53, 80, 122, 704, 785, 788, 836
BseXI	GCAGC	3 cut(s)	331, 856, 904
BsgI	GTGCAG	2 cut(s)	459, 863
BshFI	GGCC	1 cut(s)	434
BsiHKAI	GWGCWC	1 cut(s)	795
BsiHKCI	CYCGRG	1 cut(s)	614
BsiSI	CCGG	4 cut(s)	20, 602, 665, 818
BslFI	GGGAC	2 cut(s)	316, 541
BslI	CCNNNNNNNGG	2 cut(s)	151, 525
BsmAI	GTCTC	1 cut(s)	770
BsmFI	GGGAC	2 cut(s)	316, 541
BsmI	GAATGC	2 cut(s)	64, 679
BsnI	GGCC	1 cut(s)	434
Bso31I	GGTCTC	1 cut(s)	770
BsoBI	CYCGRG	1 cut(s)	614
Bsp1286I	GDGCHC	1 cut(s)	795
Bsp143I	GATC	1 cut(s)	496
BspANI	GGCC	1 cut(s)	434
BspCNI	CTCAG	2 cut(s)	340, 394
BspHI	TCATGA	2 cut(s)	198, 297
BspLI	GGNNCC	2 cut(s)	273, 606
BspMI	ACCTGC	1 cut(s)	640
BspQI	GCTCTTC	3 cut(s)	111, 783, 902
BspTI	CTTAAG	1 cut(s)	449
BspTNI	GGTCTC	1 cut(s)	770
BssMI	GATC	1 cut(s)	496
BssNAI	GTATAC	1 cut(s)	815
BssNI	GRCGYC	1 cut(s)	801
Bst1107I	GTATAC	1 cut(s)	815
Bst4CI	ACNGT	3 cut(s)	403, 428, 520
Bst6I	CTCTTC	9 cut(s)	48, 72, 84, 111, 663, 702, 783, 827, 902
BstACI	GRCGYC	1 cut(s)	801
BstAFI	CTTAAG	1 cut(s)	449
BstBAI	YACGTR	1 cut(s)	868
BstC8I	GCNNGC	1 cut(s)	648
BstDEI	CTNAG	5 cut(s)	15, 30, 240, 348, 381
BstEII	GGTNACC	2 cut(s)	353, 514
BstF5I	GGATG	1 cut(s)	843
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	1 cut(s)	499
BstMAI	GTCTC	1 cut(s)	770
BstMBI	GATC	1 cut(s)	496
BstMWI	GCNNNNNNNGC	3 cut(s)	656, 710, 892
BstNSI	RCATGY	2 cut(s)	424, 924
BstPI	GGTNACC	2 cut(s)	353, 514
BstV1I	GCAGC	3 cut(s)	331, 856, 904
BstZ17I	GTATAC	1 cut(s)	815
BsuRI	GGCC	1 cut(s)	434
BtgZI	GCGATG	1 cut(s)	918
BtsCI	GGATG	1 cut(s)	843
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	3 cut(s)	288, 394, 424
BveI	ACCTGC	1 cut(s)	640
Cac8I	GCNNGC	1 cut(s)	648
CaiI	CAGNNNCTG	1 cut(s)	347
CciI	TCATGA	2 cut(s)	198, 297
CfoI	GCGC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	593
CviAII	CATG	5 cut(s)	199, 235, 298, 421, 921
CviQI	GTAC	1 cut(s)	593
DdeI	CTNAG	5 cut(s)	15, 30, 240, 348, 381
DpnI	GATC	1 cut(s)	498
DpnII	GATC	1 cut(s)	496
Eam1104I	CTCTTC	9 cut(s)	48, 72, 84, 111, 663, 702, 783, 827, 902
EarI	CTCTTC	9 cut(s)	48, 72, 84, 111, 663, 702, 783, 827, 902
EciI	GGCGGA	1 cut(s)	653
Eco147I	AGGCCT	1 cut(s)	434
Eco31I	GGTCTC	1 cut(s)	770
Eco57I	CTGAAG	1 cut(s)	883
Eco88I	CYCGRG	1 cut(s)	614
Eco91I	GGTNACC	2 cut(s)	353, 514
EcoO65I	GGTNACC	2 cut(s)	353, 514
EcoT22I	ATGCAT	1 cut(s)	922
FaeI	CATG	5 cut(s)	202, 238, 301, 424, 924
FaiI	YATR	9 cut(s)	200, 236, 257, 299, 422, 501, 815, 922, 934
FaqI	GGGAC	2 cut(s)	316, 541
FatI	CATG	5 cut(s)	198, 234, 297, 420, 920
FauI	CCCGC	2 cut(s)	500, 891
FbaI	TGATCA	1 cut(s)	496
FblI	GTMKAC	2 cut(s)	552, 814
Fnu4HI	GCNGC	7 cut(s)	345, 636, 845, 860, 887, 890, 893
FokI	GGATG	1 cut(s)	850
Fsp4HI	GCNGC	7 cut(s)	345, 636, 845, 860, 887, 890, 893
FspBI	CTAG	2 cut(s)	504, 548
FspI	TGCGCA	1 cut(s)	175
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	7 cut(s)	345, 636, 845, 860, 887, 890, 893
HaeIII	GGCC	1 cut(s)	434
HapII	CCGG	4 cut(s)	20, 602, 665, 818
HhaI	GCGC	1 cut(s)	176
Hin1I	GRCGYC	1 cut(s)	801
Hin1II	CATG	5 cut(s)	202, 238, 301, 424, 924
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HinfI	GANTC	2 cut(s)	879, 910
HpaI	GTTAAC	1 cut(s)	418
HpaII	CCGG	4 cut(s)	20, 602, 665, 818
HphI	GGTGA	4 cut(s)	17, 365, 526, 767
Hpy166II	GTNNAC	5 cut(s)	154, 418, 553, 562, 815
Hpy188III	TCNNGA	3 cut(s)	199, 298, 365
Hpy8I	GTNNAC	5 cut(s)	154, 418, 553, 562, 815
Hpy99I	CGWCG	2 cut(s)	803, 806
HpyAV	CCTTC	5 cut(s)	88, 106, 212, 505, 719
HpyCH4III	ACNGT	3 cut(s)	403, 428, 520
HpyCH4IV	ACGT	3 cut(s)	558, 801, 867
HpyCH4V	TGCA	8 cut(s)	62, 160, 288, 424, 440, 844, 920, 927
HpyF10VI	GCNNNNNNNGC	3 cut(s)	656, 710, 892
HpyF3I	CTNAG	5 cut(s)	15, 30, 240, 348, 381
HpySE526I	ACGT	3 cut(s)	558, 801, 867
Hsp92I	GRCGYC	1 cut(s)	801
Hsp92II	CATG	5 cut(s)	202, 238, 301, 424, 924
HspAI	GCGC	1 cut(s)	174
Ksp22I	TGATCA	1 cut(s)	496
KspAI	GTTAAC	1 cut(s)	418
Kzo9I	GATC	1 cut(s)	496
LguI	GCTCTTC	3 cut(s)	111, 783, 902
LmnI	GCTCC	3 cut(s)	139, 271, 604
Lsp1109I	GCAGC	3 cut(s)	331, 856, 904
MaeI	CTAG	2 cut(s)	504, 548
MaeII	ACGT	3 cut(s)	558, 801, 867
MaeIII	GTNAC	6 cut(s)	250, 353, 394, 490, 514, 520
MalI	GATC	1 cut(s)	498
MboI	GATC	1 cut(s)	496
MhlI	GDGCHC	1 cut(s)	795
MluCI	AATT	3 cut(s)	183, 204, 827
Mph1103I	ATGCAT	1 cut(s)	922
MseI	TTAA	4 cut(s)	45, 417, 450, 807
MspA1I	CMGCKG	1 cut(s)	344
MspCI	CTTAAG	1 cut(s)	449
MspI	CCGG	4 cut(s)	20, 602, 665, 818
Mva1269I	GAATGC	2 cut(s)	64, 679
MwoI	GCNNNNNNNGC	3 cut(s)	656, 710, 892
NdeII	GATC	1 cut(s)	496
NlaIII	CATG	5 cut(s)	202, 238, 301, 424, 924
NlaIV	GGNNCC	2 cut(s)	273, 606
NmuCI	GTSAC	5 cut(s)	250, 353, 490, 514, 520
NsbI	TGCGCA	1 cut(s)	175
NsiI	ATGCAT	1 cut(s)	922
NspI	RCATGY	2 cut(s)	424, 924
PagI	TCATGA	2 cut(s)	198, 297
PceI	AGGCCT	1 cut(s)	434
PciSI	GCTCTTC	3 cut(s)	111, 783, 902
PctI	GAATGC	2 cut(s)	64, 679
PfeI	GAWTC	2 cut(s)	879, 910
PkrI	GCNGC	7 cut(s)	346, 637, 846, 861, 888, 891, 894
Ppu21I	YACGTR	1 cut(s)	868
PspEI	GGTNACC	2 cut(s)	353, 514
PspN4I	GGNNCC	2 cut(s)	273, 606
PstNI	CAGNNNCTG	1 cut(s)	347
PvuII	CAGCTG	1 cut(s)	344
RsaI	GTAC	1 cut(s)	594
RsaNI	GTAC	1 cut(s)	593
SapI	GCTCTTC	3 cut(s)	111, 783, 902
SaqAI	TTAA	4 cut(s)	45, 417, 450, 807
SatI	GCNGC	7 cut(s)	345, 636, 845, 860, 887, 890, 893
Sau3AI	GATC	1 cut(s)	496
SduI	GDGCHC	1 cut(s)	795
SmlI	CTYRAG	3 cut(s)	276, 321, 449
SmoI	CTYRAG	3 cut(s)	276, 321, 449
SpeI	ACTAGT	1 cut(s)	547
Sse9I	AATT	3 cut(s)	183, 204, 827
SseBI	AGGCCT	1 cut(s)	434
SspMI	CTAG	2 cut(s)	504, 548
StuI	AGGCCT	1 cut(s)	434
TaaI	ACNGT	3 cut(s)	403, 428, 520
TaiI	ACGT	3 cut(s)	561, 804, 870
TasI	AATT	3 cut(s)	183, 204, 827
TauI	GCSGC	4 cut(s)	638, 862, 889, 892
TfiI	GAWTC	2 cut(s)	879, 910
Tru1I	TTAA	4 cut(s)	45, 417, 450, 807
Tru9I	TTAA	4 cut(s)	45, 417, 450, 807
TscAI	CASTG	3 cut(s)	288, 394, 431
TseFI	GTSAC	5 cut(s)	250, 353, 490, 514, 520
TseI	GCWGC	3 cut(s)	344, 844, 892
Tsp45I	GTSAC	5 cut(s)	250, 353, 490, 514, 520
TspDTI	ATGAA	4 cut(s)	215, 261, 314, 921
TspRI	CASTG	3 cut(s)	288, 394, 431
Vha464I	CTTAAG	1 cut(s)	449
XceI	RCATGY	2 cut(s)	424, 924
XmiI	GTMKAC	2 cut(s)	552, 814
XspI	CTAG	2 cut(s)	504, 548
ZraI	GACGTC	1 cut(s)	802
Zsp2I	ATGCAT	1 cut(s)	922

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.