Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007146

Physical Location & Seq

Genomic Coordinates Reverse (-)

23617795 .. 23619854

Gene Structure 2060 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g33060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGGTGAAGAAACTAAGCCGGAAGAAGCTAAGGTAGAGGAGGTTAAGTCCGAAGAGAAGGCAGAGGAGAAAGCAGTAGAAGAGAAGGCAGCAGAGGAGGAGAAGAAGGAAGAGCCAAAACCACCAGCTCCTTTTGTTCTGTATGTGGACTTGCATTGTGTTGGCTGTGCAAAGAAAATTGAGAGGTCTATCATGAAAATTAGAGGGGTGGAAGGGGTTGTGGTAGACATGGCTACGAATGAAGTGACCATAAAGGGAATAGTGGAGCCTCAAGCAGTGTGCAACAAAATCATGAAAAGAACAAAGAGAAAGGCTAAAGTATTGTCTCCATTACCAGCTGCTGAGGGTGAACCTATTCCAGAAGTTGTTGCTTCTCAGGTCAGTGAACTAACAACTGTGGAACTCCAAGTTAATATGCACTGCGAGGCCTGTGCAGAACAACTTAAGAAAAAGATACTCAAAATGAGAGGGGTACAAAATGCTGTGACTGATCATAATAGCGGGAAGGTGACCGTGACGGGGACAATGGACGGAGACAAGCTAGTAGACTACGTTTACAGACGAACAAGAAAACAAGCCAAAATCGTACCACAACCGGAGCCTGAACCGGAGAAGAAAGAAGAAGCTGCGGCGGAGAAGCCAGCGGAAGAAGCAAAGCCGGAAGAGCAGAAGGAAGAGAATGCGGAGAAGAAAGAGGAGGAAAAGCCGGCAGAAGAGGCAAAGAAGGAAGAAGAAGGTGGCGCCGGCGGTGGAGAGAAGGAAGAGCATAATAACGACGTCGTTCAAGGCATACCGGAGGAGGAATTGAAGAGGATGATGCAGCACTATTATCAGCCACTTTACGTGTACGAGAGAATCCCTCCGCCGCAGCTCTTTAGCGATGAGAATCCAAATGCATGTTGCATTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko04978 map04978

Pfam Domains

Protein Families

HMA

Protein Analysis

304

Amino Acids

33.9

Weight (kDa)

5.04

Isoelectric Point (pI)

61.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	48 - 90	5.3e-11	Heavy-metal-associated domain
HMA	PF00403	136 - 179	4e-10	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24580 AT5G24580 AT5G24580 AT5G24580 AT5G24580
fragaria_vesca	FvH4_7g33060
malus_domestica	MD01G1229700.v1.1 MD07G1301700.v1.1
prunus_persica	Prupe.2G320300_v2.0.a1
pyrus_communis	pycom01g23780 pycom07g27450
rosa_chinensis	RchiOBHm_Chr1g0330391 RchiOBHm_Chr1g0383071
rosa_laevigata	RLG00000026135
rosa_multiflora	Rmu_sc0000634.1_g000006 Rmu_sc0008563.1_g000016 Rmu_sc0033623.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277640
rosa_rugosa	Rorug01G0438100
rosa_samantha	Rh1AG463800 Rh1BG421000 Rh1CG434500 Rh1DG453600
rosa_wichuraiana	Rw1G008460 Rw1G040840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	780
AccB1I	GGYRCC	1 cut(s)	740
AccI	GTMKAC	2 cut(s)	225, 546
AciI	CCGC	8 cut(s)	501, 629, 632, 644, 683, 747, 863, 866
AcyI	GRCGYC	2 cut(s)	741, 777
AfaI	GTAC	3 cut(s)	474, 588, 848
AfiI	CCNNNNNNNGG	1 cut(s)	519
AflII	CTTAAG	1 cut(s)	443
AflIII	ACRYGT	1 cut(s)	843
AgsI	TTSAA	2 cut(s)	785, 808
AluBI	AGCT	6 cut(s)	29, 128, 338, 541, 626, 871
AluI	AGCT	6 cut(s)	29, 128, 338, 541, 626, 871
Alw26I	GTCTC	2 cut(s)	330, 528
AlwNI	CAGNNNCTG	1 cut(s)	341
AoxI	GGCC	1 cut(s)	426
ApeKI	GCWGC	5 cut(s)	89, 338, 626, 820, 868
Asp700I	GAANNNNTTC	1 cut(s)	354
AspLEI	GCGC	1 cut(s)	743
AsuHPI	GGTGA	3 cut(s)	17, 359, 520
BanI	GGYRCC	1 cut(s)	740
BbvCI	CCTCAGC	1 cut(s)	342
BbvI	GCAGC	5 cut(s)	101, 325, 613, 832, 880
BcgI	CGANNNNNNTGC	2 cut(s)	413, 447
BclI	TGATCA	1 cut(s)	490
BcoDI	GTCTC	2 cut(s)	330, 528
BfaI	CTAG	1 cut(s)	542
BfoI	RGCGCY	1 cut(s)	744
BfrI	CTTAAG	1 cut(s)	443
BisI	GCNGC	7 cut(s)	90, 339, 627, 630, 821, 866, 869
BlsI	GCNGC	7 cut(s)	91, 340, 628, 631, 822, 867, 870
BmiI	GGNNCC	3 cut(s)	267, 600, 742
BmsI	GCATC	1 cut(s)	807
BplI	GAGNNNNNCTC	2 cut(s)	844, 876
Bpu10I	CCTNAGC	2 cut(s)	30, 342
BpuEI	CTTGAG	1 cut(s)	255
BsaAI	YACGTR	1 cut(s)	844
BsaBI	GATNNNNATC	1 cut(s)	885
BsaHI	GRCGYC	2 cut(s)	741, 777
BsaWI	WCCGGW	3 cut(s)	595, 607, 793
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	1 cut(s)	519
Bse118I	RCCGGY	2 cut(s)	706, 743
Bse8I	GATNNNNATC	1 cut(s)	885
BseGI	GGATG	1 cut(s)	819
BseJI	GATNNNNATC	1 cut(s)	885
BseLI	CCNNNNNNNGG	1 cut(s)	519
BseMII	CTCAG	2 cut(s)	333, 389
BseRI	GAGGAG	6 cut(s)	53, 80, 110, 113, 710, 812
BseXI	GCAGC	5 cut(s)	101, 325, 613, 832, 880
BsgI	GTGCAG	1 cut(s)	453
BshFI	GGCC	1 cut(s)	428
BshNI	GGYRCC	1 cut(s)	740
BsiSI	CCGG	7 cut(s)	20, 596, 608, 659, 707, 744, 794
BslFI	GGGAC	1 cut(s)	535
BslI	CCNNNNNNNGG	1 cut(s)	519
BsmAI	GTCTC	2 cut(s)	330, 528
BsmFI	GGGAC	1 cut(s)	535
BsmI	GAATGC	1 cut(s)	685
BsnI	GGCC	1 cut(s)	428
Bsp143I	GATC	1 cut(s)	490
BspACI	CCGC	8 cut(s)	501, 629, 632, 644, 683, 747, 863, 866
BspANI	GGCC	1 cut(s)	428
BspCNI	CTCAG	2 cut(s)	334, 388
BspHI	TCATGA	2 cut(s)	192, 291
BspLI	GGNNCC	3 cut(s)	267, 600, 742
BspQI	GCTCTTC	3 cut(s)	105, 657, 756
BspT107I	GGYRCC	1 cut(s)	740
BspTI	CTTAAG	1 cut(s)	443
BsrFI	RCCGGY	2 cut(s)	706, 743
BssAI	RCCGGY	2 cut(s)	706, 743
BssMI	GATC	1 cut(s)	490
BssNI	GRCGYC	2 cut(s)	741, 777
Bst4CI	ACNGT	2 cut(s)	397, 514
Bst6I	CTCTTC	8 cut(s)	48, 75, 105, 657, 669, 708, 756, 803
BstACI	GRCGYC	2 cut(s)	741, 777
BstAFI	CTTAAG	1 cut(s)	443
BstBAI	YACGTR	1 cut(s)	844
BstC8I	GCNNGC	3 cut(s)	642, 708, 745
BstDEI	CTNAG	4 cut(s)	15, 30, 342, 375
BstEII	GGTNACC	1 cut(s)	508
BstF5I	GGATG	1 cut(s)	819
BstH2I	RGCGCY	1 cut(s)	744
BstHHI	GCGC	1 cut(s)	743
BstKTI	GATC	1 cut(s)	493
BstMAI	GTCTC	2 cut(s)	330, 528
BstMBI	GATC	1 cut(s)	490
BstMWI	GCNNNNNNNGC	3 cut(s)	650, 664, 716
BstNSI	RCATGY	1 cut(s)	900
BstPI	GGTNACC	1 cut(s)	508
BstV1I	GCAGC	5 cut(s)	101, 325, 613, 832, 880
BsuRI	GGCC	1 cut(s)	428
BtgZI	GCGATG	1 cut(s)	894
BtsCI	GGATG	1 cut(s)	819
BtsI	GCAGTG	2 cut(s)	282, 418
BtsIMutI	CAGTG	3 cut(s)	282, 388, 418
Cac8I	GCNNGC	3 cut(s)	642, 708, 745
CaiI	CAGNNNCTG	1 cut(s)	341
CciI	TCATGA	2 cut(s)	192, 291
CfoI	GCGC	1 cut(s)	743
Cfr10I	RCCGGY	2 cut(s)	706, 743
Csp6I	GTAC	3 cut(s)	473, 587, 847
CviAII	CATG	4 cut(s)	193, 229, 292, 897
CviQI	GTAC	3 cut(s)	473, 587, 847
DdeI	CTNAG	4 cut(s)	15, 30, 342, 375
DinI	GGCGCC	1 cut(s)	742
DpnI	GATC	1 cut(s)	492
DpnII	GATC	1 cut(s)	490
Eam1104I	CTCTTC	8 cut(s)	48, 75, 105, 657, 669, 708, 756, 803
EarI	CTCTTC	8 cut(s)	48, 75, 105, 657, 669, 708, 756, 803
EciI	GGCGGA	2 cut(s)	647, 852
Eco147I	AGGCCT	1 cut(s)	428
Eco91I	GGTNACC	1 cut(s)	508
EcoO65I	GGTNACC	1 cut(s)	508
EcoT22I	ATGCAT	1 cut(s)	898
EgeI	GGCGCC	1 cut(s)	742
EheI	GGCGCC	1 cut(s)	742
FaeI	CATG	4 cut(s)	196, 232, 295, 900
FaqI	GGGAC	1 cut(s)	535
FatI	CATG	4 cut(s)	192, 228, 291, 896
FauI	CCCGC	1 cut(s)	494
FbaI	TGATCA	1 cut(s)	490
FblI	GTMKAC	2 cut(s)	225, 546
Fnu4HI	GCNGC	7 cut(s)	90, 339, 627, 630, 821, 866, 869
FokI	GGATG	1 cut(s)	826
Fsp4HI	GCNGC	7 cut(s)	90, 339, 627, 630, 821, 866, 869
FspBI	CTAG	1 cut(s)	542
GlaI	GCGC	1 cut(s)	742
GluI	GCNGC	7 cut(s)	90, 339, 627, 630, 821, 866, 869
HaeII	RGCGCY	1 cut(s)	744
HaeIII	GGCC	1 cut(s)	428
HapII	CCGG	7 cut(s)	20, 596, 608, 659, 707, 744, 794
HhaI	GCGC	1 cut(s)	743
Hin1I	GRCGYC	2 cut(s)	741, 777
Hin1II	CATG	4 cut(s)	196, 232, 295, 900
Hin6I	GCGC	1 cut(s)	741
HinP1I	GCGC	1 cut(s)	741
HinfI	GANTC	2 cut(s)	855, 886
HpaII	CCGG	7 cut(s)	20, 596, 608, 659, 707, 744, 794
HphI	GGTGA	3 cut(s)	17, 359, 520
Hpy166II	GTNNAC	7 cut(s)	148, 226, 350, 386, 547, 556, 847
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	3 cut(s)	193, 292, 359
Hpy8I	GTNNAC	7 cut(s)	148, 226, 350, 386, 547, 556, 847
Hpy99I	CGWCG	2 cut(s)	779, 782
HpyAV	CCTTC	9 cut(s)	52, 79, 100, 206, 499, 664, 718, 728, 751
HpyCH4III	ACNGT	2 cut(s)	397, 514
HpyCH4IV	ACGT	3 cut(s)	552, 777, 843
HpyCH4V	TGCA	8 cut(s)	154, 170, 282, 418, 434, 820, 896, 903
HpyF10VI	GCNNNNNNNGC	3 cut(s)	650, 664, 716
HpyF3I	CTNAG	4 cut(s)	15, 30, 342, 375
HpySE526I	ACGT	3 cut(s)	552, 777, 843
Hsp92I	GRCGYC	2 cut(s)	741, 777
Hsp92II	CATG	4 cut(s)	196, 232, 295, 900
HspAI	GCGC	1 cut(s)	741
KasI	GGCGCC	1 cut(s)	740
KroI	GCCGGC	2 cut(s)	706, 743
KroNI	GCCGGC	2 cut(s)	708, 745
Ksp22I	TGATCA	1 cut(s)	490
Kzo9I	GATC	1 cut(s)	490
LguI	GCTCTTC	3 cut(s)	105, 657, 756
LmnI	GCTCC	3 cut(s)	133, 265, 598
Lsp1109I	GCAGC	5 cut(s)	101, 325, 613, 832, 880
LweI	GCATC	1 cut(s)	807
MaeI	CTAG	1 cut(s)	542
MaeII	ACGT	3 cut(s)	552, 777, 843
MaeIII	GTNAC	4 cut(s)	244, 484, 508, 514
MalI	GATC	1 cut(s)	492
MboI	GATC	1 cut(s)	490
MluCI	AATT	3 cut(s)	177, 198, 803
Mly113I	GGCGCC	1 cut(s)	741
Mph1103I	ATGCAT	1 cut(s)	898
MreI	CGCCGGCG	1 cut(s)	743
MroNI	GCCGGC	2 cut(s)	706, 743
MroXI	GAANNNNTTC	1 cut(s)	354
MseI	TTAA	3 cut(s)	45, 411, 444
MspA1I	CMGCKG	2 cut(s)	338, 644
MspCI	CTTAAG	1 cut(s)	443
MspI	CCGG	7 cut(s)	20, 596, 608, 659, 707, 744, 794
Mva1269I	GAATGC	1 cut(s)	685
MwoI	GCNNNNNNNGC	3 cut(s)	650, 664, 716
NaeI	GCCGGC	2 cut(s)	708, 745
NarI	GGCGCC	1 cut(s)	741
NdeII	GATC	1 cut(s)	490
NgoMIV	GCCGGC	2 cut(s)	706, 743
NlaIII	CATG	4 cut(s)	196, 232, 295, 900
NlaIV	GGNNCC	3 cut(s)	267, 600, 742
NmuCI	GTSAC	4 cut(s)	244, 484, 508, 514
NsiI	ATGCAT	1 cut(s)	898
NspI	RCATGY	1 cut(s)	900
PagI	TCATGA	2 cut(s)	192, 291
PceI	AGGCCT	1 cut(s)	428
PciSI	GCTCTTC	3 cut(s)	105, 657, 756
PctI	GAATGC	1 cut(s)	685
PdiI	GCCGGC	2 cut(s)	708, 745
PdmI	GAANNNNTTC	1 cut(s)	354
PfeI	GAWTC	2 cut(s)	855, 886
PkrI	GCNGC	7 cut(s)	91, 340, 628, 631, 822, 867, 870
PluTI	GGCGCC	1 cut(s)	744
Ppu21I	YACGTR	1 cut(s)	844
PspEI	GGTNACC	1 cut(s)	508
PspN4I	GGNNCC	3 cut(s)	267, 600, 742
PstNI	CAGNNNCTG	1 cut(s)	341
PvuII	CAGCTG	1 cut(s)	338
RsaI	GTAC	3 cut(s)	474, 588, 848
RsaNI	GTAC	3 cut(s)	473, 587, 847
SapI	GCTCTTC	3 cut(s)	105, 657, 756
SaqAI	TTAA	3 cut(s)	45, 411, 444
SatI	GCNGC	7 cut(s)	90, 339, 627, 630, 821, 866, 869
Sau3AI	GATC	1 cut(s)	490
SfaNI	GCATC	1 cut(s)	807
SfoI	GGCGCC	1 cut(s)	742
SgrAI	CRCCGGYG	1 cut(s)	743
SmlI	CTYRAG	2 cut(s)	270, 443
SmoI	CTYRAG	2 cut(s)	270, 443
Sse9I	AATT	3 cut(s)	177, 198, 803
SseBI	AGGCCT	1 cut(s)	428
SsiI	CCGC	8 cut(s)	501, 629, 632, 644, 683, 747, 863, 866
SspDI	GGCGCC	1 cut(s)	740
SspMI	CTAG	1 cut(s)	542
StuI	AGGCCT	1 cut(s)	428
TaaI	ACNGT	2 cut(s)	397, 514
TaiI	ACGT	3 cut(s)	555, 780, 846
TasI	AATT	3 cut(s)	177, 198, 803
TauI	GCSGC	2 cut(s)	632, 868
TfiI	GAWTC	2 cut(s)	855, 886
Tru1I	TTAA	3 cut(s)	45, 411, 444
Tru9I	TTAA	3 cut(s)	45, 411, 444
TscAI	CASTG	3 cut(s)	282, 388, 425
TseFI	GTSAC	4 cut(s)	244, 484, 508, 514
TseI	GCWGC	5 cut(s)	89, 338, 626, 820, 868
Tsp45I	GTSAC	4 cut(s)	244, 484, 508, 514
TspDTI	ATGAA	4 cut(s)	209, 255, 308, 897
TspGWI	ACGGA	1 cut(s)	546
TspRI	CASTG	3 cut(s)	282, 388, 425
Vha464I	CTTAAG	1 cut(s)	443
XceI	RCATGY	1 cut(s)	900
XmiI	GTMKAC	2 cut(s)	225, 546
XmnI	GAANNNNTTC	1 cut(s)	354
XspI	CTAG	1 cut(s)	542
ZraI	GACGTC	1 cut(s)	778
Zsp2I	ATGCAT	1 cut(s)	898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.