Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007146

Physical Location & Seq

Genomic Coordinates Reverse (-)

53678618 .. 53680871

Gene Structure 2254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0438100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGATGAGAATGAAGAACAAGACGAGTTCAGGGGTGGAAGTGTCAATGTCTAGTATGAATGGTGGGAACGAGTCTGGGCCGGGGGAGTGGGAGGTCAGGCCCGGAGGAATGTTGGTCCAGAAACGGAATCCGGACTCTGATCGGAACTTGGCGCCTCCGCCGACAATTCGGGTCCGGGTCAAGCACGGGTCTGTTTACCATGAAATCAGTATTGGCGCCCAAGCTTCGTTTGGGGACTTGAAGAAAATGCTGGTCGGACCGACGGGTTTGCACCACCTGGATATGAAGCTGATATTCAAAGACAAGGAGAGGGATTCCAAGGCGTTTCTTGACATTTCCGGGGTGAAAGACCGATCAAAGATGGTGTGTGTTGAAGACCCTCTTAGCCAAGAAAAGCGGTATCTTGAGATGAGGCGCAATGCCAAAATGGAGAAGGCATCAAAGTCCATCTCCGAAATCAGCTTGGAAGTAGACCGGCTCGCCGGTCAGGTGTCTGCTCTTGAAACAATTATTACTAAAGGTGCAAAAGTTGCAGAACAGGATGTGCTTAAAGTGATCGAGCAGTTGATGAATCAGTTGCTTAAATTAGACGGAATTATGGGGGATGGAGATGTGAAGTTGCAAAGGAAAATGCAGGTGAAAAGAGTTCAGAAGTATGTTGAAACTCTGGATGTTTTGAAAGTTAAAAACTCCATGCCTAGTAGCAATGGGGATCACATTCCAAAGCAAGCTCATAGTCATAGACAAAATCATTCCAACGGCAATGGGCGTATCCTAACACCAATTCAAGAGCAGCAACCAAGGAATTCACTTGGGACTTTACCTACACATCAGCAGCAAGGGCAAAAGCAATTACAACAACAACAACCATCCAGGCATTCTACATCAGGGCCAATCGTTACCACGCAGTGGGAGACTTTTGATAATATGCCGCCATTGATCCCAATCTCGTCAACATCTACATCAACAACCTCAGCAGCCAATGGTTCTGCCTACCCTAAATTTAATTGGGAGTCATTCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko04978 map04978

Pfam Domains

Protein Families

HMA

Protein Analysis

341

Amino Acids

37.96

Weight (kDa)

9.52

Isoelectric Point (pI)

41.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAG	PF02179	150 - 225	4.5e-17	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24580 AT5G24580 AT5G24580 AT5G24580 AT5G24580
fragaria_vesca	FvH4_7g33060
malus_domestica	MD01G1229700.v1.1 MD07G1301700.v1.1
prunus_persica	Prupe.2G320300_v2.0.a1
pyrus_communis	pycom01g23780 pycom07g27450
rosa_chinensis	RchiOBHm_Chr1g0330391 RchiOBHm_Chr1g0383071
rosa_laevigata	RLG00000026135
rosa_multiflora	Rmu_sc0000634.1_g000006 Rmu_sc0008563.1_g000016 Rmu_sc0033623.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277640
rosa_rugosa	Rorug01G0438100
rosa_samantha	Rh1AG463800 Rh1BG421000 Rh1CG434500 Rh1DG453600
rosa_wichuraiana	Rw1G008460 Rw1G040840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	625
Acc36I	ACCTGC	1 cut(s)	625
AccB1I	GGYRCC	2 cut(s)	151, 215
AccB7I	CCANNNNNTGG	1 cut(s)	909
AccI	GTMKAC	1 cut(s)	471
AccIII	TCCGGA	1 cut(s)	130
AciI	CCGC	3 cut(s)	158, 397, 932
AclWI	GGATC	2 cut(s)	720, 934
AcsI	RAATTY	2 cut(s)	805, 1001
AcyI	GRCGYC	2 cut(s)	152, 216
AdeI	CACNNNGTG	1 cut(s)	909
AfiI	CCNNNNNNNGG	1 cut(s)	909
AgsI	TTSAA	7 cut(s)	241, 298, 374, 503, 662, 679, 788
AjnI	CCWGG	2 cut(s)	276, 872
AjuI	GAANNNNNNNTTGG	2 cut(s)	195, 227
AluBI	AGCT	4 cut(s)	224, 289, 462, 731
AluI	AGCT	4 cut(s)	224, 289, 462, 731
Alw26I	GTCTC	1 cut(s)	908
AlwI	GGATC	2 cut(s)	720, 934
Aor13HI	TCCGGA	1 cut(s)	130
AoxI	GGCC	3 cut(s)	77, 98, 890
ApeKI	GCWGC	3 cut(s)	793, 835, 977
ApoI	RAATTY	2 cut(s)	805, 1001
AspLEI	GCGC	3 cut(s)	154, 218, 417
AspS9I	GGNCC	6 cut(s)	77, 99, 115, 172, 257, 890
AsuC2I	CCSGG	4 cut(s)	81, 102, 176, 340
AsuHPI	GGTGA	2 cut(s)	355, 649
AvaII	GGWCC	3 cut(s)	115, 172, 257
BanI	GGYRCC	2 cut(s)	151, 215
BbsI	GAAGAC	1 cut(s)	381
BbvCI	CCTCAGC	1 cut(s)	973
BbvI	GCAGC	3 cut(s)	805, 847, 989
BccI	CCATC	4 cut(s)	355, 455, 599, 877
BceAI	ACGGC	1 cut(s)	775
BcgI	CGANNNNNNTGC	2 cut(s)	250, 284
BciT130I	CCWGG	2 cut(s)	278, 874
BciVI	GTATCC	1 cut(s)	782
BcnI	CCSGG	4 cut(s)	81, 102, 176, 340
BcoDI	GTCTC	1 cut(s)	908
BfaI	CTAG	2 cut(s)	51, 699
BfoI	RGCGCY	2 cut(s)	155, 219
BfuAI	ACCTGC	1 cut(s)	625
BfuI	GTATCC	1 cut(s)	782
BisI	GCNGC	4 cut(s)	794, 836, 932, 978
BlsI	GCNGC	4 cut(s)	795, 837, 933, 979
Bme1390I	CCNGG	6 cut(s)	81, 102, 176, 278, 340, 874
Bme18I	GGWCC	3 cut(s)	115, 172, 257
BmgT120I	GGNCC	6 cut(s)	77, 99, 115, 172, 257, 890
BmiI	GGNNCC	3 cut(s)	153, 173, 217
BmrFI	CCNGG	6 cut(s)	81, 102, 176, 278, 340, 874
BmsI	GCATC	1 cut(s)	446
BpiI	GAAGAC	1 cut(s)	381
Bpu10I	CCTNAGC	1 cut(s)	973
BpuEI	CTTGAG	1 cut(s)	425
BpuMI	CCSGG	4 cut(s)	81, 102, 176, 340
BsaBI	GATNNNNATC	1 cut(s)	944
BsaHI	GRCGYC	2 cut(s)	152, 216
BsaJI	CCNNGG	4 cut(s)	80, 318, 339, 800
BsaWI	WCCGGW	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	1 cut(s)	909
Bse118I	RCCGGY	2 cut(s)	474, 482
Bse3DI	GCAATG	3 cut(s)	424, 712, 769
Bse8I	GATNNNNATC	1 cut(s)	944
BseAI	TCCGGA	1 cut(s)	130
BseBI	CCWGG	2 cut(s)	278, 874
BseDI	CCNNGG	4 cut(s)	80, 318, 339, 800
BseGI	GGATG	4 cut(s)	547, 610, 676, 869
BseJI	GATNNNNATC	1 cut(s)	944
BseLI	CCNNNNNNNGG	1 cut(s)	909
BseMI	GCAATG	3 cut(s)	424, 712, 769
BseMII	CTCAG	1 cut(s)	987
BseXI	GCAGC	3 cut(s)	805, 847, 989
BshFI	GGCC	3 cut(s)	79, 100, 892
BshNI	GGYRCC	2 cut(s)	151, 215
BsiSI	CCGG	7 cut(s)	80, 102, 131, 175, 339, 475, 483
BslFI	GGGAC	2 cut(s)	248, 829
BslI	CCNNNNNNNGG	1 cut(s)	909
BsmAI	GTCTC	1 cut(s)	908
BsmFI	GGGAC	2 cut(s)	248, 829
BsmI	GAATGC	1 cut(s)	877
BsnI	GGCC	3 cut(s)	79, 100, 892
Bsp13I	TCCGGA	1 cut(s)	130
Bsp143I	GATC	5 cut(s)	139, 353, 555, 712, 939
BspACI	CCGC	3 cut(s)	158, 397, 932
BspANI	GGCC	3 cut(s)	79, 100, 892
BspCNI	CTCAG	1 cut(s)	986
BspEI	TCCGGA	1 cut(s)	130
BspLI	GGNNCC	3 cut(s)	153, 173, 217
BspMI	ACCTGC	1 cut(s)	625
BspPI	GGATC	2 cut(s)	720, 934
BspT107I	GGYRCC	2 cut(s)	151, 215
BsrDI	GCAATG	3 cut(s)	424, 712, 769
BsrFI	RCCGGY	2 cut(s)	474, 482
BssAI	RCCGGY	2 cut(s)	474, 482
BssECI	CCNNGG	4 cut(s)	80, 318, 339, 800
BssMI	GATC	5 cut(s)	139, 353, 555, 712, 939
BssNI	GRCGYC	2 cut(s)	152, 216
BssT1I	CCWWGG	2 cut(s)	318, 800
Bst2UI	CCWGG	2 cut(s)	278, 874
BstACI	GRCGYC	2 cut(s)	152, 216
BstAPI	GCANNNNNTGC	1 cut(s)	530
BstC8I	GCNNGC	2 cut(s)	480, 729
BstDEI	CTNAG	2 cut(s)	383, 973
BstF5I	GGATG	4 cut(s)	547, 610, 676, 869
BstH2I	RGCGCY	2 cut(s)	155, 219
BstHHI	GCGC	3 cut(s)	154, 218, 417
BstKTI	GATC	5 cut(s)	142, 356, 558, 715, 942
BstMAI	GTCTC	1 cut(s)	908
BstMBI	GATC	5 cut(s)	139, 353, 555, 712, 939
BstMWI	GCNNNNNNNGC	2 cut(s)	530, 841
BstNI	CCWGG	2 cut(s)	278, 874
BstSCI	CCNGG	6 cut(s)	79, 100, 174, 276, 338, 872
BstV1I	GCAGC	3 cut(s)	805, 847, 989
BstV2I	GAAGAC	1 cut(s)	381
BsuI	GTATCC	1 cut(s)	782
BsuRI	GGCC	3 cut(s)	79, 100, 892
BtsCI	GGATG	4 cut(s)	547, 610, 676, 869
BtsI	GCAGTG	1 cut(s)	914
BtsIMutI	CAGTG	1 cut(s)	914
BveI	ACCTGC	1 cut(s)	625
Cac8I	GCNNGC	2 cut(s)	480, 729
CfoI	GCGC	3 cut(s)	154, 218, 417
Cfr10I	RCCGGY	2 cut(s)	474, 482
Cfr13I	GGNCC	6 cut(s)	77, 99, 115, 172, 257, 890
CpoI	CGGWCCG	1 cut(s)	257
CspI	CGGWCCG	1 cut(s)	257
CviAII	CATG	2 cut(s)	200, 694
DdeI	CTNAG	2 cut(s)	383, 973
DinI	GGCGCC	2 cut(s)	153, 217
DpnI	GATC	5 cut(s)	141, 355, 557, 714, 941
DpnII	GATC	5 cut(s)	139, 353, 555, 712, 939
DraIII	CACNNNGTG	1 cut(s)	909
EciI	GGCGGA	1 cut(s)	147
Eco130I	CCWWGG	2 cut(s)	318, 800
Eco47I	GGWCC	3 cut(s)	115, 172, 257
EcoRI	GAATTC	1 cut(s)	805
EcoRII	CCWGG	2 cut(s)	276, 872
EcoT14I	CCWWGG	2 cut(s)	318, 800
EgeI	GGCGCC	2 cut(s)	153, 217
EheI	GGCGCC	2 cut(s)	153, 217
ErhI	CCWWGG	2 cut(s)	318, 800
FaeI	CATG	2 cut(s)	203, 697
FaiI	YATR	9 cut(s)	56, 201, 284, 599, 657, 695, 735, 741, 929
FalI	AAGNNNNNCTT	2 cut(s)	366, 398
FaqI	GGGAC	2 cut(s)	248, 829
FatI	CATG	2 cut(s)	199, 693
FblI	GTMKAC	1 cut(s)	471
Fnu4HI	GCNGC	4 cut(s)	794, 836, 932, 978
FokI	GGATG	4 cut(s)	554, 617, 683, 856
Fsp4HI	GCNGC	4 cut(s)	794, 836, 932, 978
FspBI	CTAG	2 cut(s)	51, 699
GlaI	GCGC	3 cut(s)	153, 217, 416
GluI	GCNGC	4 cut(s)	794, 836, 932, 978
HaeII	RGCGCY	2 cut(s)	155, 219
HaeIII	GGCC	3 cut(s)	79, 100, 892
HapII	CCGG	7 cut(s)	80, 102, 131, 175, 339, 475, 483
HhaI	GCGC	3 cut(s)	154, 218, 417
Hin1I	GRCGYC	2 cut(s)	152, 216
Hin1II	CATG	2 cut(s)	203, 697
Hin6I	GCGC	3 cut(s)	152, 216, 415
HinP1I	GCGC	3 cut(s)	152, 216, 415
HincII	GTYRAC	1 cut(s)	954
HindII	GTYRAC	1 cut(s)	954
HindIII	AAGCTT	1 cut(s)	222
HinfI	GANTC	6 cut(s)	71, 127, 134, 314, 571, 1013
HpaII	CCGG	7 cut(s)	80, 102, 131, 175, 339, 475, 483
HphI	GGTGA	2 cut(s)	355, 649
Hpy166II	GTNNAC	3 cut(s)	196, 472, 954
Hpy188I	TCNGA	5 cut(s)	139, 144, 257, 454, 651
Hpy188III	TCNNGA	7 cut(s)	118, 131, 329, 404, 500, 668, 788
Hpy8I	GTNNAC	3 cut(s)	196, 472, 954
Hpy99I	CGWCG	1 cut(s)	265
HpyAV	CCTTC	1 cut(s)	427
HpyCH4V	TGCA	5 cut(s)	271, 524, 533, 622, 634
HpyF10VI	GCNNNNNNNGC	2 cut(s)	530, 841
HpyF3I	CTNAG	2 cut(s)	383, 973
Hsp92I	GRCGYC	2 cut(s)	152, 216
Hsp92II	CATG	2 cut(s)	203, 697
HspAI	GCGC	3 cut(s)	152, 216, 415
KasI	GGCGCC	2 cut(s)	151, 215
Kpn2I	TCCGGA	1 cut(s)	130
Kzo9I	GATC	5 cut(s)	139, 353, 555, 712, 939
Lsp1109I	GCAGC	3 cut(s)	805, 847, 989
LweI	GCATC	1 cut(s)	446
MaeI	CTAG	2 cut(s)	51, 699
MaeIII	GTNAC	1 cut(s)	898
MalI	GATC	5 cut(s)	141, 355, 557, 714, 941
MboI	GATC	5 cut(s)	139, 353, 555, 712, 939
MboII	GAAGA	3 cut(s)	25, 253, 386
MluCI	AATT	9 cut(s)	165, 507, 584, 594, 783, 805, 851, 1001, 1006
Mly113I	GGCGCC	2 cut(s)	152, 216
MlyI	GAGTC	3 cut(s)	80, 128, 1022
MmeI	TCCRAC	2 cut(s)	235, 780
MnlI	CCTC	7 cut(s)	85, 98, 165, 303, 390, 405, 982
MroI	TCCGGA	1 cut(s)	130
MseI	TTAA	4 cut(s)	549, 582, 684, 1005
MspI	CCGG	7 cut(s)	80, 102, 131, 175, 339, 475, 483
MspR9I	CCNGG	6 cut(s)	81, 102, 176, 278, 340, 874
Mva1269I	GAATGC	1 cut(s)	877
MvaI	CCWGG	2 cut(s)	278, 874
MwoI	GCNNNNNNNGC	2 cut(s)	530, 841
NarI	GGCGCC	2 cut(s)	152, 216
NciI	CCSGG	4 cut(s)	81, 102, 176, 340
NdeII	GATC	5 cut(s)	139, 353, 555, 712, 939
NlaIII	CATG	2 cut(s)	203, 697
NlaIV	GGNNCC	3 cut(s)	153, 173, 217
PaqCI	CACCTGC	1 cut(s)	625
PctI	GAATGC	1 cut(s)	877
PfeI	GAWTC	3 cut(s)	127, 314, 571
PflMI	CCANNNNNTGG	1 cut(s)	909
PkrI	GCNGC	4 cut(s)	795, 837, 933, 979
PleI	GAGTC	3 cut(s)	79, 128, 1021
PluTI	GGCGCC	2 cut(s)	155, 219
PpsI	GAGTC	3 cut(s)	79, 128, 1021
Psp6I	CCWGG	2 cut(s)	276, 872
PspGI	CCWGG	2 cut(s)	276, 872
PspN4I	GGNNCC	3 cut(s)	153, 173, 217
PspPI	GGNCC	6 cut(s)	77, 99, 115, 172, 257, 890
Rsr2I	CGGWCCG	1 cut(s)	257
RsrII	CGGWCCG	1 cut(s)	257
SaqAI	TTAA	4 cut(s)	549, 582, 684, 1005
SatI	GCNGC	4 cut(s)	794, 836, 932, 978
Sau3AI	GATC	5 cut(s)	139, 353, 555, 712, 939
Sau96I	GGNCC	6 cut(s)	77, 99, 115, 172, 257, 890
SchI	GAGTC	3 cut(s)	80, 128, 1022
ScrFI	CCNGG	6 cut(s)	81, 102, 176, 278, 340, 874
SfaNI	GCATC	1 cut(s)	446
SfoI	GGCGCC	2 cut(s)	153, 217
SinI	GGWCC	3 cut(s)	115, 172, 257
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
Sse9I	AATT	9 cut(s)	165, 507, 584, 594, 783, 805, 851, 1001, 1006
SsiI	CCGC	3 cut(s)	158, 397, 932
SspDI	GGCGCC	2 cut(s)	151, 215
SspMI	CTAG	2 cut(s)	51, 699
StyD4I	CCNGG	6 cut(s)	79, 100, 174, 276, 338, 872
StyI	CCWWGG	2 cut(s)	318, 800
TaqI	TCGA	2 cut(s)	558, 1020
TaqII	GACCGA	2 cut(s)	274, 366
TasI	AATT	9 cut(s)	165, 507, 584, 594, 783, 805, 851, 1001, 1006
TauI	GCSGC	1 cut(s)	934
TfiI	GAWTC	3 cut(s)	127, 314, 571
Tru1I	TTAA	4 cut(s)	549, 582, 684, 1005
Tru9I	TTAA	4 cut(s)	549, 582, 684, 1005
TscAI	CASTG	1 cut(s)	914
TseI	GCWGC	3 cut(s)	793, 835, 977
TspDTI	ATGAA	5 cut(s)	26, 71, 216, 299, 584
TspGWI	ACGGA	2 cut(s)	139, 606
TspRI	CASTG	1 cut(s)	914
Van91I	CCANNNNNTGG	1 cut(s)	909
VpaK11BI	GGWCC	3 cut(s)	115, 172, 257
XapI	RAATTY	2 cut(s)	805, 1001
XcmI	CCANNNNNNNNNTGG	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	471
XspI	CTAG	2 cut(s)	51, 699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.