Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007146

Physical Location & Seq

Genomic Coordinates Reverse (-)

20995490 .. 20997714

Gene Structure 2225 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g23780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGGTGAAGAGGCTAAGCAGGAACAAGCTAAGGCAGAGCCTAAGCCAGAGGAGAAGGCCGAGGAGAAAGTAGAGGAAAAGAAAGAAGAAGAGGAGAAAAAGGAAGAGCCAAAGCCTCCTTCTCCCTTCGTGTTGTTTGTAGACTTGCATTGTGTGGGATGTGCAAAGAAGATTGAGAGGTCCATCATGAAAATTAGAGGAGTGGAGGGGGTTGTGATAGATATGGCTAAAAATGAAGTGACCATAAAGGGAATAGTGGAGCCTCAGGCAGTGTGCAATAAAATCATGAAGAAAACCAAGAGAAAAGCAAAAGTCTTGTCCCCATTACCAGCTGCTGAGGGTGAACCTATTCCAGAAGTTGTTGCCTCACAGGTTAGTGGACTTGTAAATGTAGAACTCGAAGTTAACATGCACTGTGAGGCCTGTGCAGAGCAACTCAAGAAAAAGATACTCAAACTCAGAGGAGTGCAAAGTGCTGTGACTGAACATAGTAGCGGGAAGGTGATGGTGACAGGGACCATAGACGGGGACAAGCTAGTAGAGTATGTGTATAGACGAACCAAGAAGCAAGCCCGAATAGTCCCACAACCCGAGCCCGAACCCGAGAAGAAAGAAGATGAGAAGCCAGCTGCAGAAGAAGCAAAACCCGAAGAGGAGAAGAAAGAAGAAAATGCAGGGAAAAAAGAAGAGGATAAACCGGCAGAAGGGGAGGGAAAGAAAGAAGAGGGCGGAGCTGACGGCGGAGAAAGTAATAATAAGGAGGAGGAGAAAGGTGGCGAGGAGAACAAAGAAGAGGGGAAGAAGGTGGAAGAGATGATGAGTGGCAGTTACGTAAATAGTGGCATGGATGAGGAACAGATGAAAAGAATGATGCAGTACTATTATCAACCTCTTTACGTGATTGAGAGAATCCCACCTCCTCAGCTGTTCAGTGATGAGAATCCCAATGCATGTTGCATTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko04978 map04978

Pfam Domains

Protein Families

HMA

Protein Analysis

322

Amino Acids

35.87

Weight (kDa)

5.08

Isoelectric Point (pI)

63.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	45 - 97	1.3e-10	Heavy-metal-associated domain
HMA	PF00403	135 - 180	9.3e-08	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24580 AT5G24580 AT5G24580 AT5G24580 AT5G24580
fragaria_vesca	FvH4_7g33060
malus_domestica	MD01G1229700.v1.1 MD07G1301700.v1.1
prunus_persica	Prupe.2G320300_v2.0.a1
pyrus_communis	pycom01g23780 pycom07g27450
rosa_chinensis	RchiOBHm_Chr1g0330391 RchiOBHm_Chr1g0383071
rosa_laevigata	RLG00000026135
rosa_multiflora	Rmu_sc0000634.1_g000006 Rmu_sc0008563.1_g000016 Rmu_sc0033623.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277640
rosa_rugosa	Rorug01G0438100
rosa_samantha	Rh1AG463800 Rh1BG421000 Rh1CG434500 Rh1DG453600
rosa_wichuraiana	Rw1G008460 Rw1G040840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	141
AciI	CCGC	3 cut(s)	495, 729, 741
AfaI	GTAC	1 cut(s)	878
AfiI	CCNNNNNNNGG	2 cut(s)	525, 704
AjuI	GAANNNNNNNTTGG	2 cut(s)	103, 135
AluBI	AGCT	6 cut(s)	29, 332, 535, 629, 734, 925
AluI	AGCT	6 cut(s)	29, 332, 535, 629, 734, 925
AlwNI	CAGNNNCTG	1 cut(s)	335
Ama87I	CYCGRG	2 cut(s)	590, 602
AoxI	GGCC	2 cut(s)	57, 420
ApeKI	GCWGC	2 cut(s)	332, 629
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
Asp700I	GAANNNNTTC	1 cut(s)	348
AspS9I	GGNCC	2 cut(s)	180, 516
AsuHPI	GGTGA	4 cut(s)	17, 353, 514, 520
AvaI	CYCGRG	2 cut(s)	590, 602
AvaII	GGWCC	2 cut(s)	180, 516
AxyI	CCTNAGG	1 cut(s)	264
BanII	GRGCYC	1 cut(s)	597
BbvCI	CCTCAGC	2 cut(s)	336, 921
BbvI	GCAGC	2 cut(s)	319, 616
BccI	CCATC	2 cut(s)	191, 499
BceAI	ACGGC	1 cut(s)	754
BfaI	CTAG	1 cut(s)	536
BfmI	CTRYAG	1 cut(s)	630
BisI	GCNGC	2 cut(s)	333, 630
BlpI	GCTNAGC	1 cut(s)	15
BlsI	GCNGC	2 cut(s)	334, 631
BmcAI	AGTACT	1 cut(s)	878
Bme18I	GGWCC	2 cut(s)	180, 516
BmeT110I	CYCGRG	2 cut(s)	590, 602
BmgT120I	GGNCC	2 cut(s)	180, 516
BmiI	GGNNCC	2 cut(s)	261, 517
BmsI	GCATC	1 cut(s)	861
Bpu10I	CCTNAGC	4 cut(s)	30, 42, 336, 921
Bpu1102I	GCTNAGC	1 cut(s)	15
BpuEI	CTTGAG	1 cut(s)	422
BsaAI	YACGTR	2 cut(s)	832, 898
BsaBI	GATNNNNATC	1 cut(s)	939
BsaJI	CCNNGG	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	2 cut(s)	525, 704
Bse118I	RCCGGY	1 cut(s)	697
Bse21I	CCTNAGG	1 cut(s)	264
Bse8I	GATNNNNATC	1 cut(s)	939
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	2 cut(s)	164, 853
BseJI	GATNNNNATC	1 cut(s)	939
BseLI	CCNNNNNNNGG	2 cut(s)	525, 704
BseMII	CTCAG	4 cut(s)	278, 327, 472, 935
BseXI	GCAGC	2 cut(s)	319, 616
BsgI	GTGCAG	1 cut(s)	447
BshFI	GGCC	2 cut(s)	59, 422
BsiHKCI	CYCGRG	2 cut(s)	590, 602
BsiSI	CCGG	1 cut(s)	698
BslFI	GGGAC	4 cut(s)	304, 529, 542, 566
BslI	CCNNNNNNNGG	2 cut(s)	525, 704
BsmFI	GGGAC	4 cut(s)	304, 529, 542, 566
BsnI	GGCC	2 cut(s)	59, 422
BsoBI	CYCGRG	2 cut(s)	590, 602
Bsp1286I	GDGCHC	1 cut(s)	597
Bsp1720I	GCTNAGC	1 cut(s)	15
BspACI	CCGC	3 cut(s)	495, 729, 741
BspANI	GGCC	2 cut(s)	59, 422
BspCNI	CTCAG	4 cut(s)	277, 328, 471, 934
BspHI	TCATGA	3 cut(s)	186, 285, 962
BspLI	GGNNCC	2 cut(s)	261, 517
BspMAI	CTGCAG	1 cut(s)	634
BspQI	GCTCTTC	1 cut(s)	99
BsrFI	RCCGGY	1 cut(s)	697
BssAI	RCCGGY	1 cut(s)	697
BssECI	CCNNGG	1 cut(s)	60
Bst4CI	ACNGT	1 cut(s)	416
Bst6I	CTCTTC	8 cut(s)	3, 84, 99, 645, 681, 717, 786, 804
BstBAI	YACGTR	2 cut(s)	832, 898
BstC8I	GCNNGC	2 cut(s)	570, 627
BstDEI	CTNAG	7 cut(s)	15, 30, 42, 264, 336, 458, 921
BstF5I	GGATG	2 cut(s)	164, 853
BstMWI	GCNNNNNNNGC	1 cut(s)	638
BstNSI	RCATGY	2 cut(s)	412, 954
BstSFI	CTRYAG	1 cut(s)	630
BstSNI	TACGTA	1 cut(s)	832
BstV1I	GCAGC	2 cut(s)	319, 616
Bsu36I	CCTNAGG	1 cut(s)	264
BsuRI	GGCC	2 cut(s)	59, 422
BtsCI	GGATG	2 cut(s)	164, 853
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	3 cut(s)	276, 412, 937
Cac8I	GCNNGC	2 cut(s)	570, 627
CaiI	CAGNNNCTG	1 cut(s)	335
CciI	TCATGA	3 cut(s)	186, 285, 962
Cfr10I	RCCGGY	1 cut(s)	697
Cfr13I	GGNCC	2 cut(s)	180, 516
Csp6I	GTAC	1 cut(s)	877
CviAII	CATG	6 cut(s)	187, 286, 409, 844, 951, 963
CviQI	GTAC	1 cut(s)	877
DdeI	CTNAG	7 cut(s)	15, 30, 42, 264, 336, 458, 921
Eam1104I	CTCTTC	8 cut(s)	3, 84, 99, 645, 681, 717, 786, 804
EarI	CTCTTC	8 cut(s)	3, 84, 99, 645, 681, 717, 786, 804
EciI	GGCGGA	2 cut(s)	744, 756
Eco105I	TACGTA	1 cut(s)	832
Eco147I	AGGCCT	1 cut(s)	422
Eco24I	GRGCYC	1 cut(s)	597
Eco47I	GGWCC	2 cut(s)	180, 516
Eco81I	CCTNAGG	1 cut(s)	264
Eco88I	CYCGRG	2 cut(s)	590, 602
EcoT22I	ATGCAT	1 cut(s)	952
EcoT38I	GRGCYC	1 cut(s)	597
FaeI	CATG	6 cut(s)	190, 289, 412, 847, 954, 966
FaqI	GGGAC	4 cut(s)	304, 529, 542, 566
FatI	CATG	6 cut(s)	186, 285, 408, 843, 950, 962
FauI	CCCGC	1 cut(s)	488
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	2 cut(s)	333, 630
FokI	GGATG	2 cut(s)	171, 860
FriOI	GRGCYC	1 cut(s)	597
Fsp4HI	GCNGC	2 cut(s)	333, 630
FspBI	CTAG	1 cut(s)	536
GluI	GCNGC	2 cut(s)	333, 630
HaeIII	GGCC	2 cut(s)	59, 422
HapII	CCGG	1 cut(s)	698
Hin1II	CATG	6 cut(s)	190, 289, 412, 847, 954, 966
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	2 cut(s)	909, 940
HpaI	GTTAAC	1 cut(s)	406
HpaII	CCGG	1 cut(s)	698
HphI	GGTGA	4 cut(s)	17, 353, 514, 520
Hpy166II	GTNNAC	4 cut(s)	142, 344, 380, 406
Hpy188I	TCNGA	1 cut(s)	461
Hpy188III	TCNNGA	5 cut(s)	187, 286, 353, 439, 963
Hpy8I	GTNNAC	4 cut(s)	142, 344, 380, 406
HpyAV	CCTTC	6 cut(s)	49, 129, 136, 493, 698, 796
HpyCH4III	ACNGT	1 cut(s)	416
HpyCH4IV	ACGT	2 cut(s)	831, 897
HpyF10VI	GCNNNNNNNGC	1 cut(s)	638
HpyF3I	CTNAG	7 cut(s)	15, 30, 42, 264, 336, 458, 921
HpySE526I	ACGT	2 cut(s)	831, 897
Hsp92II	CATG	6 cut(s)	190, 289, 412, 847, 954, 966
KspAI	GTTAAC	1 cut(s)	406
LguI	GCTCTTC	1 cut(s)	99
LmnI	GCTCC	2 cut(s)	259, 731
Lsp1109I	GCAGC	2 cut(s)	319, 616
LweI	GCATC	1 cut(s)	861
MaeI	CTAG	1 cut(s)	536
MaeII	ACGT	2 cut(s)	831, 897
MaeIII	GTNAC	4 cut(s)	238, 478, 508, 827
MhlI	GDGCHC	1 cut(s)	597
MluCI	AATT	1 cut(s)	192
Mph1103I	ATGCAT	1 cut(s)	952
MroXI	GAANNNNTTC	1 cut(s)	348
MseI	TTAA	1 cut(s)	405
MspA1I	CMGCKG	3 cut(s)	332, 629, 925
MspI	CCGG	1 cut(s)	698
MwoI	GCNNNNNNNGC	1 cut(s)	638
NlaIII	CATG	6 cut(s)	190, 289, 412, 847, 954, 966
NlaIV	GGNNCC	2 cut(s)	261, 517
NmeAIII	GCCGAG	1 cut(s)	85
NmuCI	GTSAC	3 cut(s)	238, 478, 508
NsiI	ATGCAT	1 cut(s)	952
NspI	RCATGY	2 cut(s)	412, 954
PagI	TCATGA	3 cut(s)	186, 285, 962
PceI	AGGCCT	1 cut(s)	422
PciSI	GCTCTTC	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	2 cut(s)	909, 940
PkrI	GCNGC	2 cut(s)	334, 631
Ppu21I	YACGTR	2 cut(s)	832, 898
PspN4I	GGNNCC	2 cut(s)	261, 517
PspPI	GGNCC	2 cut(s)	180, 516
PstI	CTGCAG	1 cut(s)	634
PstNI	CAGNNNCTG	1 cut(s)	335
PvuII	CAGCTG	3 cut(s)	332, 629, 925
RsaI	GTAC	1 cut(s)	878
RsaNI	GTAC	1 cut(s)	877
SapI	GCTCTTC	1 cut(s)	99
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	2 cut(s)	333, 630
Sau96I	GGNCC	2 cut(s)	180, 516
ScaI	AGTACT	1 cut(s)	878
SduI	GDGCHC	1 cut(s)	597
SfaNI	GCATC	1 cut(s)	861
SfcI	CTRYAG	1 cut(s)	630
SinI	GGWCC	2 cut(s)	180, 516
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
SnaBI	TACGTA	1 cut(s)	832
Sse9I	AATT	1 cut(s)	192
SseBI	AGGCCT	1 cut(s)	422
SsiI	CCGC	3 cut(s)	495, 729, 741
SspMI	CTAG	1 cut(s)	536
StuI	AGGCCT	1 cut(s)	422
TaaI	ACNGT	1 cut(s)	416
TaiI	ACGT	2 cut(s)	834, 900
TaqI	TCGA	1 cut(s)	399
TasI	AATT	1 cut(s)	192
TatI	WGTACW	1 cut(s)	876
TfiI	GAWTC	2 cut(s)	909, 940
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	3 cut(s)	276, 419, 937
TseFI	GTSAC	3 cut(s)	238, 478, 508
TseI	GCWGC	2 cut(s)	332, 629
Tsp45I	GTSAC	3 cut(s)	238, 478, 508
TspDTI	ATGAA	5 cut(s)	203, 249, 302, 875, 951
TspRI	CASTG	3 cut(s)	276, 419, 937
VpaK11BI	GGWCC	2 cut(s)	180, 516
XceI	RCATGY	2 cut(s)	412, 954
XmiI	GTMKAC	1 cut(s)	141
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	1 cut(s)	536
ZrmI	AGTACT	1 cut(s)	878
Zsp2I	ATGCAT	1 cut(s)	952

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.