Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0007146

Physical Location & Seq

Genomic Coordinates Reverse (-)

68984821 .. 68986131

Gene Structure 1311 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG434500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGGTGAAGAAACTAAGCCGGAAGAAGCTAAGGTAGAGGAGGTTAAGCCAGAAGAGAAGAAAGAAGAGAAGGCAGAGGAGGAGAAGAAGGAAGAGCCAAAACCACCAGCTCCTTTTGTCCTATTTGTGGACTTGCATTGTGTGGGGTGTGCAAAGAAAATTGAGAGGTCTATCATGAAAATTAGAGGGGTGGAAGGGGTTGTGATAGACATGGCTAAGAATGAAGTGACCATAAAGGGAATAGTGGAGCCTCAAGCAGTGTGCAACAAAATCATGAAAACAACCAAGAGAAAGGCTCAAGTCTTGTCCCCATTACCAGCTGCTGAGGGTGACCCTATTCCAGAAGTTGTTGCTTCTCAGGTCAGTGGAGTAACAACTGTGGAACTCCAAGTTAACATGCACTGTGAGGCCTGTGCAGAACAACTTAAGAAAAAGATACTCAAAATGAGAGGGGTTCAAAATGCCGTGACTGATCATACTAGCGGGAAGGTGACCGTGACGGGGACAATGGACGGCGACAAACTAGTAGACTACGTTTACAGACGAACCAGAAAACAAGCCAAAATCGTACCACAACCGGAGCCTGAACCCGAGAAGAAAGAAGAACCTGCGGCGGAGAAGCCAGCCGAAGAAGCAAAGCCGGAAGAGAATGCGGAGAAGAAAGAAGAGGAAAAGCCCGCAGAAGAGGCAAAGAAAGAAGAAGGTGGCGGTGGAGAAAGTAATAAAGAGGGTGAGGAAAAGAAAGAGGAGGAGACCAAGATTGAAGAGCACAACGACGTCGTTAATGGTATACCGGAGGAGGAATTGAAGAGGATGGTGCAGCACTATTATCAGCCGCTTTACGTGTTTGAGAGAATCCCGCCGCCGCAGCTCTTCAGCGATGAGAATCCAAATGCATGTTGCATTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko04978 map04978

Pfam Domains

Protein Families

HMA

Protein Analysis

303

Amino Acids

33.91

Weight (kDa)

5.07

Isoelectric Point (pI)

61.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	41 - 85	1.2e-10	Heavy-metal-associated domain
HMA	PF00403	130 - 173	7e-10	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24580 AT5G24580 AT5G24580 AT5G24580 AT5G24580
fragaria_vesca	FvH4_7g33060
malus_domestica	MD01G1229700.v1.1 MD07G1301700.v1.1
prunus_persica	Prupe.2G320300_v2.0.a1
pyrus_communis	pycom01g23780 pycom07g27450
rosa_chinensis	RchiOBHm_Chr1g0330391 RchiOBHm_Chr1g0383071
rosa_laevigata	RLG00000026135
rosa_multiflora	Rmu_sc0000634.1_g000006 Rmu_sc0008563.1_g000016 Rmu_sc0033623.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277640
rosa_rugosa	Rorug01G0438100
rosa_samantha	Rh1AG463800 Rh1BG421000 Rh1CG434500 Rh1DG453600
rosa_wichuraiana	Rw1G008460 Rw1G040840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	780
Acc36I	ACCTGC	1 cut(s)	616
AccI	GTMKAC	2 cut(s)	528, 790
AcuI	CTGAAG	1 cut(s)	859
AcyI	GRCGYC	1 cut(s)	777
AfaI	GTAC	1 cut(s)	570
AfiI	CCNNNNNNNGG	2 cut(s)	127, 501
AflII	CTTAAG	1 cut(s)	425
AflIII	ACRYGT	1 cut(s)	843
AgsI	TTSAA	3 cut(s)	458, 764, 808
AhlI	ACTAGT	1 cut(s)	523
AluBI	AGCT	4 cut(s)	29, 110, 320, 871
AluI	AGCT	4 cut(s)	29, 110, 320, 871
Alw21I	GWGCWC	1 cut(s)	771
Alw26I	GTCTC	1 cut(s)	746
AlwNI	CAGNNNCTG	1 cut(s)	323
Ama87I	CYCGRG	1 cut(s)	590
AoxI	GGCC	1 cut(s)	408
ApeKI	GCWGC	3 cut(s)	320, 820, 868
AsuHPI	GGTGA	4 cut(s)	17, 341, 502, 743
AvaI	CYCGRG	1 cut(s)	590
Bbv12I	GWGCWC	1 cut(s)	771
BbvCI	CCTCAGC	1 cut(s)	324
BbvI	GCAGC	3 cut(s)	307, 832, 880
BccI	CCATC	1 cut(s)	808
BceAI	ACGGC	2 cut(s)	449, 529
BclI	TGATCA	1 cut(s)	472
BcoDI	GTCTC	1 cut(s)	746
BcuI	ACTAGT	1 cut(s)	523
BfaI	CTAG	2 cut(s)	480, 524
BfrI	CTTAAG	1 cut(s)	425
BfuAI	ACCTGC	1 cut(s)	616
BisI	GCNGC	7 cut(s)	321, 612, 821, 836, 863, 866, 869
BlsI	GCNGC	7 cut(s)	322, 613, 822, 837, 864, 867, 870
BmeT110I	CYCGRG	1 cut(s)	590
BmiI	GGNNCC	2 cut(s)	249, 582
BplI	GAGNNNNNCTC	2 cut(s)	280, 312
Bpu10I	CCTNAGC	2 cut(s)	30, 324
BpuEI	CTTGAG	2 cut(s)	237, 282
BsaAI	YACGTR	1 cut(s)	844
BsaBI	GATNNNNATC	1 cut(s)	885
BsaHI	GRCGYC	1 cut(s)	777
BsaI	GGTCTC	1 cut(s)	746
BsaWI	WCCGGW	2 cut(s)	577, 793
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 501
Bse8I	GATNNNNATC	1 cut(s)	885
BseGI	GGATG	1 cut(s)	819
BseJI	GATNNNNATC	1 cut(s)	885
BseLI	CCNNNNNNNGG	2 cut(s)	127, 501
BseMII	CTCAG	2 cut(s)	315, 371
BseRI	GAGGAG	6 cut(s)	53, 92, 95, 761, 764, 812
BseXI	GCAGC	3 cut(s)	307, 832, 880
BsgI	GTGCAG	2 cut(s)	435, 839
BshFI	GGCC	1 cut(s)	410
BsiHKAI	GWGCWC	1 cut(s)	771
BsiHKCI	CYCGRG	1 cut(s)	590
BsiSI	CCGG	4 cut(s)	20, 578, 641, 794
BslFI	GGGAC	2 cut(s)	292, 517
BslI	CCNNNNNNNGG	2 cut(s)	127, 501
BsmAI	GTCTC	1 cut(s)	746
BsmFI	GGGAC	2 cut(s)	292, 517
BsmI	GAATGC	1 cut(s)	655
BsnI	GGCC	1 cut(s)	410
Bso31I	GGTCTC	1 cut(s)	746
BsoBI	CYCGRG	1 cut(s)	590
Bsp1286I	GDGCHC	1 cut(s)	771
Bsp143I	GATC	1 cut(s)	472
BspANI	GGCC	1 cut(s)	410
BspCNI	CTCAG	2 cut(s)	316, 370
BspHI	TCATGA	2 cut(s)	174, 273
BspLI	GGNNCC	2 cut(s)	249, 582
BspMI	ACCTGC	1 cut(s)	616
BspQI	GCTCTTC	3 cut(s)	87, 759, 878
BspTI	CTTAAG	1 cut(s)	425
BspTNI	GGTCTC	1 cut(s)	746
BssMI	GATC	1 cut(s)	472
BssNAI	GTATAC	1 cut(s)	791
BssNI	GRCGYC	1 cut(s)	777
Bst1107I	GTATAC	1 cut(s)	791
Bst4CI	ACNGT	3 cut(s)	379, 404, 496
Bst6I	CTCTTC	9 cut(s)	48, 60, 87, 639, 660, 678, 759, 803, 878
BstACI	GRCGYC	1 cut(s)	777
BstAFI	CTTAAG	1 cut(s)	425
BstBAI	YACGTR	1 cut(s)	844
BstC8I	GCNNGC	2 cut(s)	624, 678
BstDEI	CTNAG	5 cut(s)	15, 30, 216, 324, 357
BstEII	GGTNACC	2 cut(s)	329, 490
BstF5I	GGATG	1 cut(s)	819
BstKTI	GATC	1 cut(s)	475
BstMAI	GTCTC	1 cut(s)	746
BstMBI	GATC	1 cut(s)	472
BstMWI	GCNNNNNNNGC	3 cut(s)	632, 686, 868
BstNSI	RCATGY	2 cut(s)	400, 900
BstPI	GGTNACC	2 cut(s)	329, 490
BstV1I	GCAGC	3 cut(s)	307, 832, 880
BstZ17I	GTATAC	1 cut(s)	791
BsuRI	GGCC	1 cut(s)	410
BtgZI	GCGATG	1 cut(s)	894
BtsCI	GGATG	1 cut(s)	819
BtsI	GCAGTG	1 cut(s)	264
BtsIMutI	CAGTG	3 cut(s)	264, 370, 400
BveI	ACCTGC	1 cut(s)	616
Cac8I	GCNNGC	2 cut(s)	624, 678
CaiI	CAGNNNCTG	1 cut(s)	323
CciI	TCATGA	2 cut(s)	174, 273
Csp6I	GTAC	1 cut(s)	569
CviAII	CATG	5 cut(s)	175, 211, 274, 397, 897
CviQI	GTAC	1 cut(s)	569
DdeI	CTNAG	5 cut(s)	15, 30, 216, 324, 357
DpnI	GATC	1 cut(s)	474
DpnII	GATC	1 cut(s)	472
Eam1104I	CTCTTC	9 cut(s)	48, 60, 87, 639, 660, 678, 759, 803, 878
EarI	CTCTTC	9 cut(s)	48, 60, 87, 639, 660, 678, 759, 803, 878
EciI	GGCGGA	1 cut(s)	629
Eco147I	AGGCCT	1 cut(s)	410
Eco31I	GGTCTC	1 cut(s)	746
Eco57I	CTGAAG	1 cut(s)	859
Eco88I	CYCGRG	1 cut(s)	590
Eco91I	GGTNACC	2 cut(s)	329, 490
EcoO65I	GGTNACC	2 cut(s)	329, 490
EcoT22I	ATGCAT	1 cut(s)	898
FaeI	CATG	5 cut(s)	178, 214, 277, 400, 900
FaiI	YATR	9 cut(s)	176, 212, 233, 275, 398, 477, 791, 898, 910
FaqI	GGGAC	2 cut(s)	292, 517
FatI	CATG	5 cut(s)	174, 210, 273, 396, 896
FauI	CCCGC	3 cut(s)	476, 685, 867
FbaI	TGATCA	1 cut(s)	472
FblI	GTMKAC	2 cut(s)	528, 790
Fnu4HI	GCNGC	7 cut(s)	321, 612, 821, 836, 863, 866, 869
FokI	GGATG	1 cut(s)	826
Fsp4HI	GCNGC	7 cut(s)	321, 612, 821, 836, 863, 866, 869
FspBI	CTAG	2 cut(s)	480, 524
GluI	GCNGC	7 cut(s)	321, 612, 821, 836, 863, 866, 869
HaeIII	GGCC	1 cut(s)	410
HapII	CCGG	4 cut(s)	20, 578, 641, 794
Hin1I	GRCGYC	1 cut(s)	777
Hin1II	CATG	5 cut(s)	178, 214, 277, 400, 900
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HinfI	GANTC	2 cut(s)	855, 886
HpaI	GTTAAC	1 cut(s)	394
HpaII	CCGG	4 cut(s)	20, 578, 641, 794
HphI	GGTGA	4 cut(s)	17, 341, 502, 743
Hpy166II	GTNNAC	5 cut(s)	130, 394, 529, 538, 791
Hpy188III	TCNNGA	3 cut(s)	175, 274, 341
Hpy8I	GTNNAC	5 cut(s)	130, 394, 529, 538, 791
Hpy99I	CGWCG	2 cut(s)	779, 782
HpyAV	CCTTC	5 cut(s)	64, 82, 188, 481, 695
HpyCH4III	ACNGT	3 cut(s)	379, 404, 496
HpyCH4IV	ACGT	3 cut(s)	534, 777, 843
HpyCH4V	TGCA	8 cut(s)	136, 152, 264, 400, 416, 820, 896, 903
HpyF10VI	GCNNNNNNNGC	3 cut(s)	632, 686, 868
HpyF3I	CTNAG	5 cut(s)	15, 30, 216, 324, 357
HpySE526I	ACGT	3 cut(s)	534, 777, 843
Hsp92I	GRCGYC	1 cut(s)	777
Hsp92II	CATG	5 cut(s)	178, 214, 277, 400, 900
Ksp22I	TGATCA	1 cut(s)	472
KspAI	GTTAAC	1 cut(s)	394
Kzo9I	GATC	1 cut(s)	472
LguI	GCTCTTC	3 cut(s)	87, 759, 878
LmnI	GCTCC	3 cut(s)	115, 247, 580
Lsp1109I	GCAGC	3 cut(s)	307, 832, 880
MaeI	CTAG	2 cut(s)	480, 524
MaeII	ACGT	3 cut(s)	534, 777, 843
MaeIII	GTNAC	6 cut(s)	226, 329, 370, 466, 490, 496
MalI	GATC	1 cut(s)	474
MboI	GATC	1 cut(s)	472
MhlI	GDGCHC	1 cut(s)	771
MluCI	AATT	3 cut(s)	159, 180, 803
Mph1103I	ATGCAT	1 cut(s)	898
MseI	TTAA	4 cut(s)	45, 393, 426, 783
MspA1I	CMGCKG	1 cut(s)	320
MspCI	CTTAAG	1 cut(s)	425
MspI	CCGG	4 cut(s)	20, 578, 641, 794
Mva1269I	GAATGC	1 cut(s)	655
MwoI	GCNNNNNNNGC	3 cut(s)	632, 686, 868
NdeII	GATC	1 cut(s)	472
NlaIII	CATG	5 cut(s)	178, 214, 277, 400, 900
NlaIV	GGNNCC	2 cut(s)	249, 582
NmuCI	GTSAC	5 cut(s)	226, 329, 466, 490, 496
NsiI	ATGCAT	1 cut(s)	898
NspI	RCATGY	2 cut(s)	400, 900
PagI	TCATGA	2 cut(s)	174, 273
PceI	AGGCCT	1 cut(s)	410
PciSI	GCTCTTC	3 cut(s)	87, 759, 878
PctI	GAATGC	1 cut(s)	655
PfeI	GAWTC	2 cut(s)	855, 886
PkrI	GCNGC	7 cut(s)	322, 613, 822, 837, 864, 867, 870
Ppu21I	YACGTR	1 cut(s)	844
PspEI	GGTNACC	2 cut(s)	329, 490
PspN4I	GGNNCC	2 cut(s)	249, 582
PstNI	CAGNNNCTG	1 cut(s)	323
PvuII	CAGCTG	1 cut(s)	320
RsaI	GTAC	1 cut(s)	570
RsaNI	GTAC	1 cut(s)	569
SapI	GCTCTTC	3 cut(s)	87, 759, 878
SaqAI	TTAA	4 cut(s)	45, 393, 426, 783
SatI	GCNGC	7 cut(s)	321, 612, 821, 836, 863, 866, 869
Sau3AI	GATC	1 cut(s)	472
SduI	GDGCHC	1 cut(s)	771
SmlI	CTYRAG	3 cut(s)	252, 297, 425
SmoI	CTYRAG	3 cut(s)	252, 297, 425
SpeI	ACTAGT	1 cut(s)	523
Sse9I	AATT	3 cut(s)	159, 180, 803
SseBI	AGGCCT	1 cut(s)	410
SspMI	CTAG	2 cut(s)	480, 524
StuI	AGGCCT	1 cut(s)	410
TaaI	ACNGT	3 cut(s)	379, 404, 496
TaiI	ACGT	3 cut(s)	537, 780, 846
TasI	AATT	3 cut(s)	159, 180, 803
TauI	GCSGC	4 cut(s)	614, 838, 865, 868
TfiI	GAWTC	2 cut(s)	855, 886
Tru1I	TTAA	4 cut(s)	45, 393, 426, 783
Tru9I	TTAA	4 cut(s)	45, 393, 426, 783
TscAI	CASTG	3 cut(s)	264, 370, 407
TseFI	GTSAC	5 cut(s)	226, 329, 466, 490, 496
TseI	GCWGC	3 cut(s)	320, 820, 868
Tsp45I	GTSAC	5 cut(s)	226, 329, 466, 490, 496
TspDTI	ATGAA	4 cut(s)	191, 237, 290, 897
TspRI	CASTG	3 cut(s)	264, 370, 407
Vha464I	CTTAAG	1 cut(s)	425
XceI	RCATGY	2 cut(s)	400, 900
XmiI	GTMKAC	2 cut(s)	528, 790
XspI	CTAG	2 cut(s)	480, 524
ZraI	GACGTC	1 cut(s)	778
Zsp2I	ATGCAT	1 cut(s)	898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.