Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007146

Physical Location & Seq

Genomic Coordinates Reverse (-)

29845811 .. 29848488

Gene Structure 2678 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G320300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGGTGAAGAGGCTAAGCAGGAACCAGCTCAGGCAGAGGCTAAGCCAGAGGAGAAAGCAGAGCAGAAAACAGAGGAGAAGAAAGAAGAGAAGGCAGAGGAGAAGGAAGAGCCAAAACCACCATCTCCTTTTGTGCTATTTGTAGACTTACATTGTATGGGATGTGCGAAGAAGATTGAGAGGTCCATCATGCGACTTAGAGGGGTGGAGGGGGTTATGATAGATACGGCTAAAAATGAAGTGACCATAAAGGGAATAGTGGAGCCTCAAGCAGTGTGCAACAAAATCATGAAGAAAACCAAGAGAAAAGCAAAAGTCTTGTCCCCATTACCAGCTGCTGAGGGTGAACCCATGCCGGAAGTTGTTGCTTCACAGGTTAGTGGACTAGTAACTGTGGAGCTCCAAGTTAACATGCACTGTGAGGCCTGCGCAGAGCAACTTAAGAAAAAGATACTCAAACTCAGAGGAGTGCAAAGTGCTGTGACTGATCACAATAGCGGGAAGGTGATGGTGACAGGAACCATGGACGGCGACAAGCTAGTAGATTATGTGTACAGACGAACCAAGAAGCAAGCCCGAATCGTCCCACAACCGGAGCCTGAACCCGAGAAGAAAGAAGAGAACAAGGAAGGTGATGACAAGGCAGCAGAAGAAGCAAAACCATCAGAAGACAAGAAAGAAGAAAATGCAGAGGAAAAACCTGCAGAAGAGGCAAAGAAAGAAGAGGGTGGTGGTGATGGTGGAGAAGAAAGTAAAAACAAGGAGGAGGAGAAAGGTGGTGGTGAGGAAAACAAGGTGGTGGAGGAGATGAGCGGCAGTTACGTAAATAGTGGTATGGATGAGGAAAGTATGAAAAGAATGATGCAGTACTATTATCAGCCGCTGTATGTGATTGAGAGAATCCCACCTCCTCAGCTGTTCAGTGATGAGAATCCAAATGCATGTTGCATTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko04978 map04978

Pfam Domains

Protein Families

HMA

Protein Analysis

319

Amino Acids

35.43

Weight (kDa)

5.04

Isoelectric Point (pI)

67.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24580 AT5G24580 AT5G24580 AT5G24580 AT5G24580
fragaria_vesca	FvH4_7g33060
malus_domestica	MD01G1229700.v1.1 MD07G1301700.v1.1
prunus_persica	Prupe.2G320300_v2.0.a1
pyrus_communis	pycom01g23780 pycom07g27450
rosa_chinensis	RchiOBHm_Chr1g0330391 RchiOBHm_Chr1g0383071
rosa_laevigata	RLG00000026135
rosa_multiflora	Rmu_sc0000634.1_g000006 Rmu_sc0008563.1_g000016 Rmu_sc0033623.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277640
rosa_rugosa	Rorug01G0438100
rosa_samantha	Rh1AG463800 Rh1BG421000 Rh1CG434500 Rh1DG453600
rosa_wichuraiana	Rw1G008460 Rw1G040840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	430
Acc36I	ACCTGC	1 cut(s)	709
AccBSI	CCGCTC	1 cut(s)	813
AccI	GTMKAC	1 cut(s)	144
AciI	CCGC	3 cut(s)	498, 813, 881
AfaI	GTAC	2 cut(s)	554, 869
AfiI	CCNNNNNNNGG	1 cut(s)	592
AflII	CTTAAG	1 cut(s)	440
AhlI	ACTAGT	1 cut(s)	385
AluBI	AGCT	5 cut(s)	29, 335, 400, 538, 916
AluI	AGCT	5 cut(s)	29, 335, 400, 538, 916
Alw21I	GWGCWC	1 cut(s)	402
AlwNI	CAGNNNCTG	2 cut(s)	338, 883
Ama87I	CYCGRG	1 cut(s)	605
AoxI	GGCC	1 cut(s)	423
ApeKI	GCWGC	2 cut(s)	335, 644
ArsI	GACNNNNNNTTYG	2 cut(s)	305, 337
AspLEI	GCGC	1 cut(s)	431
AspS9I	GGNCC	1 cut(s)	183
AsuHPI	GGTGA	7 cut(s)	17, 356, 517, 523, 644, 746, 794
AvaI	CYCGRG	1 cut(s)	605
AvaII	GGWCC	1 cut(s)	183
BanII	GRGCYC	1 cut(s)	402
BbsI	GAAGAC	1 cut(s)	675
Bbv12I	GWGCWC	1 cut(s)	402
BbvCI	CCTCAGC	2 cut(s)	339, 912
BbvI	GCAGC	2 cut(s)	322, 656
BccI	CCATC	5 cut(s)	130, 194, 502, 670, 731
BceAI	ACGGC	2 cut(s)	243, 544
BclI	TGATCA	1 cut(s)	487
BcuI	ACTAGT	1 cut(s)	385
BfaI	CTAG	2 cut(s)	386, 539
BfmI	CTRYAG	1 cut(s)	702
BfrI	CTTAAG	1 cut(s)	440
BfuAI	ACCTGC	1 cut(s)	709
BisI	GCNGC	4 cut(s)	336, 645, 814, 881
BlpI	GCTNAGC	2 cut(s)	15, 42
BlsI	GCNGC	4 cut(s)	337, 646, 815, 882
BmcAI	AGTACT	1 cut(s)	869
Bme18I	GGWCC	1 cut(s)	183
BmeT110I	CYCGRG	1 cut(s)	605
BmgT120I	GGNCC	1 cut(s)	183
BmiI	GGNNCC	4 cut(s)	24, 264, 520, 597
BmsI	GCATC	1 cut(s)	852
BpiI	GAAGAC	1 cut(s)	675
Bpu10I	CCTNAGC	3 cut(s)	30, 339, 912
Bpu1102I	GCTNAGC	2 cut(s)	15, 42
BpuEI	CTTGAG	1 cut(s)	252
BsaAI	YACGTR	1 cut(s)	823
BsaBI	GATNNNNATC	1 cut(s)	930
BsaJI	CCNNGG	1 cut(s)	522
BsaWI	WCCGGW	1 cut(s)	592
Bsc4I	CCNNNNNNNGG	1 cut(s)	592
Bse8I	GATNNNNATC	1 cut(s)	930
BseDI	CCNNGG	1 cut(s)	522
BseGI	GGATG	2 cut(s)	167, 844
BseJI	GATNNNNATC	1 cut(s)	930
BseLI	CCNNNNNNNGG	1 cut(s)	592
BseMII	CTCAG	4 cut(s)	44, 330, 475, 926
BseRI	GAGGAG	8 cut(s)	65, 89, 113, 480, 779, 782, 818, 900
BseXI	GCAGC	2 cut(s)	322, 656
BshFI	GGCC	1 cut(s)	425
BsiHKAI	GWGCWC	1 cut(s)	402
BsiHKCI	CYCGRG	1 cut(s)	605
BsiSI	CCGG	2 cut(s)	356, 593
BslFI	GGGAC	2 cut(s)	307, 569
BslI	CCNNNNNNNGG	1 cut(s)	592
BsmFI	GGGAC	2 cut(s)	307, 569
BsnI	GGCC	1 cut(s)	425
BsoBI	CYCGRG	1 cut(s)	605
Bsp1286I	GDGCHC	1 cut(s)	402
Bsp1407I	TGTACA	1 cut(s)	552
Bsp143I	GATC	1 cut(s)	487
Bsp1720I	GCTNAGC	2 cut(s)	15, 42
Bsp19I	CCATGG	1 cut(s)	522
BspACI	CCGC	3 cut(s)	498, 813, 881
BspANI	GGCC	1 cut(s)	425
BspCNI	CTCAG	4 cut(s)	43, 331, 474, 925
BspHI	TCATGA	2 cut(s)	288, 953
BspLI	GGNNCC	4 cut(s)	24, 264, 520, 597
BspMAI	CTGCAG	1 cut(s)	706
BspMI	ACCTGC	1 cut(s)	709
BspQI	GCTCTTC	1 cut(s)	102
BspTI	CTTAAG	1 cut(s)	440
BsrBI	CCGCTC	1 cut(s)	813
BsrGI	TGTACA	1 cut(s)	552
BssECI	CCNNGG	1 cut(s)	522
BssMI	GATC	1 cut(s)	487
BssT1I	CCWWGG	1 cut(s)	522
Bst4CI	ACNGT	2 cut(s)	394, 419
Bst6I	CTCTTC	6 cut(s)	3, 81, 102, 612, 702, 717
BstAFI	CTTAAG	1 cut(s)	440
BstAUI	TGTACA	1 cut(s)	552
BstBAI	YACGTR	1 cut(s)	823
BstC8I	GCNNGC	2 cut(s)	427, 573
BstDEI	CTNAG	7 cut(s)	15, 30, 42, 197, 339, 461, 912
BstDSI	CCRYGG	1 cut(s)	522
BstF5I	GGATG	2 cut(s)	167, 844
BstHHI	GCGC	1 cut(s)	431
BstKTI	GATC	1 cut(s)	490
BstMBI	GATC	1 cut(s)	487
BstMWI	GCNNNNNNNGC	2 cut(s)	653, 710
BstNSI	RCATGY	2 cut(s)	415, 945
BstSFI	CTRYAG	1 cut(s)	702
BstSNI	TACGTA	1 cut(s)	823
BstV1I	GCAGC	2 cut(s)	322, 656
BstV2I	GAAGAC	1 cut(s)	675
BsuRI	GGCC	1 cut(s)	425
BtgI	CCRYGG	1 cut(s)	522
BtsCI	GGATG	2 cut(s)	167, 844
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	3 cut(s)	279, 415, 928
BveI	ACCTGC	1 cut(s)	709
Cac8I	GCNNGC	2 cut(s)	427, 573
CaiI	CAGNNNCTG	2 cut(s)	338, 883
CciI	TCATGA	2 cut(s)	288, 953
CfoI	GCGC	1 cut(s)	431
Cfr13I	GGNCC	1 cut(s)	183
Csp6I	GTAC	2 cut(s)	553, 868
CviAII	CATG	7 cut(s)	190, 289, 352, 412, 523, 942, 954
CviQI	GTAC	2 cut(s)	553, 868
DdeI	CTNAG	7 cut(s)	15, 30, 42, 197, 339, 461, 912
DpnI	GATC	1 cut(s)	489
DpnII	GATC	1 cut(s)	487
Eam1104I	CTCTTC	6 cut(s)	3, 81, 102, 612, 702, 717
EarI	CTCTTC	6 cut(s)	3, 81, 102, 612, 702, 717
Ecl136II	GAGCTC	1 cut(s)	400
Eco105I	TACGTA	1 cut(s)	823
Eco130I	CCWWGG	1 cut(s)	522
Eco147I	AGGCCT	1 cut(s)	425
Eco24I	GRGCYC	1 cut(s)	402
Eco47I	GGWCC	1 cut(s)	183
Eco53kI	GAGCTC	1 cut(s)	400
Eco88I	CYCGRG	1 cut(s)	605
EcoICRI	GAGCTC	1 cut(s)	400
EcoT14I	CCWWGG	1 cut(s)	522
EcoT22I	ATGCAT	1 cut(s)	943
EcoT38I	GRGCYC	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	522
FaeI	CATG	7 cut(s)	193, 292, 355, 415, 526, 945, 957
FaqI	GGGAC	2 cut(s)	307, 569
FatI	CATG	7 cut(s)	189, 288, 351, 411, 522, 941, 953
FauI	CCCGC	1 cut(s)	491
FbaI	TGATCA	1 cut(s)	487
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	4 cut(s)	336, 645, 814, 881
FokI	GGATG	2 cut(s)	174, 851
FriOI	GRGCYC	1 cut(s)	402
Fsp4HI	GCNGC	4 cut(s)	336, 645, 814, 881
FspBI	CTAG	2 cut(s)	386, 539
FspI	TGCGCA	1 cut(s)	430
GlaI	GCGC	1 cut(s)	430
GluI	GCNGC	4 cut(s)	336, 645, 814, 881
HaeIII	GGCC	1 cut(s)	425
HapII	CCGG	2 cut(s)	356, 593
HhaI	GCGC	1 cut(s)	431
Hin1II	CATG	7 cut(s)	193, 292, 355, 415, 526, 945, 957
Hin6I	GCGC	1 cut(s)	429
HinP1I	GCGC	1 cut(s)	429
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HinfI	GANTC	3 cut(s)	579, 900, 931
HpaI	GTTAAC	1 cut(s)	409
HpaII	CCGG	2 cut(s)	356, 593
HphI	GGTGA	7 cut(s)	17, 356, 517, 523, 644, 746, 794
Hpy166II	GTNNAC	5 cut(s)	145, 347, 383, 409, 553
Hpy188I	TCNGA	2 cut(s)	464, 667
Hpy188III	TCNNGA	2 cut(s)	289, 954
Hpy8I	GTNNAC	5 cut(s)	145, 347, 383, 409, 553
HpyAV	CCTTC	4 cut(s)	85, 97, 496, 623
HpyCH4III	ACNGT	2 cut(s)	394, 419
HpyCH4IV	ACGT	1 cut(s)	822
HpyCH4V	TGCA	8 cut(s)	279, 415, 472, 689, 704, 865, 941, 948
HpyF10VI	GCNNNNNNNGC	2 cut(s)	653, 710
HpyF3I	CTNAG	7 cut(s)	15, 30, 42, 197, 339, 461, 912
HpySE526I	ACGT	1 cut(s)	822
Hsp92II	CATG	7 cut(s)	193, 292, 355, 415, 526, 945, 957
HspAI	GCGC	1 cut(s)	429
Ksp22I	TGATCA	1 cut(s)	487
KspAI	GTTAAC	1 cut(s)	409
Kzo9I	GATC	1 cut(s)	487
LguI	GCTCTTC	1 cut(s)	102
LmnI	GCTCC	4 cut(s)	262, 397, 405, 595
Lsp1109I	GCAGC	2 cut(s)	322, 656
LweI	GCATC	1 cut(s)	852
MaeI	CTAG	2 cut(s)	386, 539
MaeII	ACGT	1 cut(s)	822
MaeIII	GTNAC	5 cut(s)	241, 388, 481, 511, 818
MalI	GATC	1 cut(s)	489
MbiI	CCGCTC	1 cut(s)	813
MboI	GATC	1 cut(s)	487
MhlI	GDGCHC	1 cut(s)	402
Mph1103I	ATGCAT	1 cut(s)	943
MseI	TTAA	2 cut(s)	408, 441
MspA1I	CMGCKG	3 cut(s)	335, 883, 916
MspCI	CTTAAG	1 cut(s)	440
MspI	CCGG	2 cut(s)	356, 593
MwoI	GCNNNNNNNGC	2 cut(s)	653, 710
NcoI	CCATGG	1 cut(s)	522
NdeII	GATC	1 cut(s)	487
NlaIII	CATG	7 cut(s)	193, 292, 355, 415, 526, 945, 957
NlaIV	GGNNCC	4 cut(s)	24, 264, 520, 597
NmuCI	GTSAC	3 cut(s)	241, 481, 511
NsbI	TGCGCA	1 cut(s)	430
NsiI	ATGCAT	1 cut(s)	943
NspI	RCATGY	2 cut(s)	415, 945
PagI	TCATGA	2 cut(s)	288, 953
PceI	AGGCCT	1 cut(s)	425
PciSI	GCTCTTC	1 cut(s)	102
PfeI	GAWTC	3 cut(s)	579, 900, 931
PkrI	GCNGC	4 cut(s)	337, 646, 815, 882
Ppu21I	YACGTR	1 cut(s)	823
Psp124BI	GAGCTC	1 cut(s)	402
PspN4I	GGNNCC	4 cut(s)	24, 264, 520, 597
PspPI	GGNCC	1 cut(s)	183
PstI	CTGCAG	1 cut(s)	706
PstNI	CAGNNNCTG	2 cut(s)	338, 883
PvuII	CAGCTG	2 cut(s)	335, 916
RsaI	GTAC	2 cut(s)	554, 869
RsaNI	GTAC	2 cut(s)	553, 868
SacI	GAGCTC	1 cut(s)	402
SapI	GCTCTTC	1 cut(s)	102
SaqAI	TTAA	2 cut(s)	408, 441
SatI	GCNGC	4 cut(s)	336, 645, 814, 881
Sau3AI	GATC	1 cut(s)	487
Sau96I	GGNCC	1 cut(s)	183
ScaI	AGTACT	1 cut(s)	869
SduI	GDGCHC	1 cut(s)	402
SfaNI	GCATC	1 cut(s)	852
SfcI	CTRYAG	1 cut(s)	702
SinI	GGWCC	1 cut(s)	183
SmlI	CTYRAG	2 cut(s)	267, 440
SmoI	CTYRAG	2 cut(s)	267, 440
SnaBI	TACGTA	1 cut(s)	823
SpeI	ACTAGT	1 cut(s)	385
SseBI	AGGCCT	1 cut(s)	425
SsiI	CCGC	3 cut(s)	498, 813, 881
SspMI	CTAG	2 cut(s)	386, 539
SstI	GAGCTC	1 cut(s)	402
StuI	AGGCCT	1 cut(s)	425
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	2 cut(s)	394, 419
TaiI	ACGT	1 cut(s)	825
TatI	WGTACW	2 cut(s)	552, 867
TauI	GCSGC	2 cut(s)	816, 883
TfiI	GAWTC	3 cut(s)	579, 900, 931
Tru1I	TTAA	2 cut(s)	408, 441
Tru9I	TTAA	2 cut(s)	408, 441
TscAI	CASTG	3 cut(s)	279, 422, 928
TseFI	GTSAC	3 cut(s)	241, 481, 511
TseI	GCWGC	2 cut(s)	335, 644
Tsp45I	GTSAC	3 cut(s)	241, 481, 511
TspDTI	ATGAA	4 cut(s)	252, 305, 866, 942
TspRI	CASTG	3 cut(s)	279, 422, 928
Vha464I	CTTAAG	1 cut(s)	440
VpaK11BI	GGWCC	1 cut(s)	183
XceI	RCATGY	2 cut(s)	415, 945
XmiI	GTMKAC	1 cut(s)	144
XspI	CTAG	2 cut(s)	386, 539
ZrmI	AGTACT	1 cut(s)	869
Zsp2I	ATGCAT	1 cut(s)	943

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.