Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007146

Physical Location & Seq

Genomic Coordinates Forward (+)

20112131 .. 20113154

Gene Structure 1024 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55959

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGGTGAAGAAACTAATCCGGTAAGGATCGGAATTCATGCTCTCGATCATTTGGAAGAAATTAAGGTAGAGGAGGTTAAGCCAGAAGAGAAGGCAGACGAAAAAGCAGAAGAGAAGAAAGAAGAGAAGGTAGAGGAGGAGAAGAAGGAAGAGCCAAAACCACCAGCTCCTTTTGTCCTATTTGTGGACTTGCATTGTGTGGGGTGTGCAAAGAAAATTGAGAGGTCTATCATGAAAATTAGAGGGGTGGAAGGGGTTGTGATAGACATGGCTAAGAATGAAGTGACCATAAAGGGAATAGTGGAGCCTCAAGCAGTGTGCAACAAAATCATGAAAAGAACCAAGAGAAAGGCTCAAGTCTTGTCCCCATTACCAGCTGCTGAGGGTGAACCTATTCCAGAAATTGTTGCTTCTCAGGTCAGTGGAGTAACAACTGTGGAACTCCAAGTTAACATGCACTGTGAGGCCTGTGCAGAACAACTTAAGAAAAAGATACTCAAAATGAGAGGGGTTCAAAATGCCGTGACTGATCATACTAGCGGGAAGGTGACCGTGACGGGGACAATGGGCAGCGACAAACTAGTAGACTACGTTTACAGACGATCGAACCAGAAAACAAGCCAAAATCGTACCACAACCGGAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko04978 map04978

Pfam Domains

Protein Families

HMA

Protein Analysis

215

Amino Acids

23.81

Weight (kDa)

6.97

Isoelectric Point (pI)

44.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	60 - 103	5.9e-11	Heavy-metal-associated domain
HMA	PF00403	149 - 192	1.2e-09	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24580 AT5G24580 AT5G24580 AT5G24580 AT5G24580
fragaria_vesca	FvH4_7g33060
malus_domestica	MD01G1229700.v1.1 MD07G1301700.v1.1
prunus_persica	Prupe.2G320300_v2.0.a1
pyrus_communis	pycom01g23780 pycom07g27450
rosa_chinensis	RchiOBHm_Chr1g0330391 RchiOBHm_Chr1g0383071
rosa_laevigata	RLG00000026135
rosa_multiflora	Rmu_sc0000634.1_g000006 Rmu_sc0008563.1_g000016 Rmu_sc0033623.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277640
rosa_rugosa	Rorug01G0438100
rosa_samantha	Rh1AG463800 Rh1BG421000 Rh1CG434500 Rh1DG453600
rosa_wichuraiana	Rw1G008460 Rw1G040840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	585
AciI	CCGC	1 cut(s)	540
AclWI	GGATC	1 cut(s)	35
AcsI	RAATTY	1 cut(s)	33
AfaI	GTAC	1 cut(s)	631
AfiI	CCNNNNNNNGG	2 cut(s)	184, 558
AflII	CTTAAG	1 cut(s)	482
AgsI	TTSAA	1 cut(s)	515
AhlI	ACTAGT	1 cut(s)	580
AluBI	AGCT	2 cut(s)	167, 377
AluI	AGCT	2 cut(s)	167, 377
AlwI	GGATC	1 cut(s)	35
AlwNI	CAGNNNCTG	1 cut(s)	380
AoxI	GGCC	1 cut(s)	465
ApeKI	GCWGC	2 cut(s)	377, 570
ApoI	RAATTY	1 cut(s)	33
Asp700I	GAANNNNTTC	1 cut(s)	393
AsuHPI	GGTGA	3 cut(s)	17, 398, 559
BbvCI	CCTCAGC	1 cut(s)	381
BbvI	GCAGC	2 cut(s)	364, 582
BceAI	ACGGC	1 cut(s)	506
BclI	TGATCA	1 cut(s)	529
BcuI	ACTAGT	1 cut(s)	580
BfaI	CTAG	2 cut(s)	537, 581
BfrI	CTTAAG	1 cut(s)	482
BisI	GCNGC	2 cut(s)	378, 571
BlsI	GCNGC	2 cut(s)	379, 572
BmiI	GGNNCC	2 cut(s)	306, 643
BplI	GAGNNNNNCTC	2 cut(s)	337, 369
Bpu10I	CCTNAGC	1 cut(s)	381
BpuEI	CTTGAG	2 cut(s)	294, 339
BsaWI	WCCGGW	2 cut(s)	19, 638
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 558
BseLI	CCNNNNNNNGG	2 cut(s)	184, 558
BseMII	CTCAG	2 cut(s)	372, 428
BseRI	GAGGAG	3 cut(s)	86, 149, 152
BseXI	GCAGC	2 cut(s)	364, 582
BsgI	GTGCAG	1 cut(s)	492
Bsh1285I	CGRYCG	1 cut(s)	605
BshFI	GGCC	1 cut(s)	467
BsiEI	CGRYCG	1 cut(s)	605
BsiSI	CCGG	2 cut(s)	20, 639
BslFI	GGGAC	2 cut(s)	349, 574
BslI	CCNNNNNNNGG	2 cut(s)	184, 558
BsmFI	GGGAC	2 cut(s)	349, 574
BsnI	GGCC	1 cut(s)	467
Bsp143I	GATC	4 cut(s)	27, 46, 529, 602
BspACI	CCGC	1 cut(s)	540
BspANI	GGCC	1 cut(s)	467
BspCNI	CTCAG	2 cut(s)	373, 427
BspHI	TCATGA	2 cut(s)	231, 330
BspLI	GGNNCC	2 cut(s)	306, 643
BspPI	GGATC	1 cut(s)	35
BspQI	GCTCTTC	1 cut(s)	144
BspTI	CTTAAG	1 cut(s)	482
BssMI	GATC	4 cut(s)	27, 46, 529, 602
Bst4CI	ACNGT	3 cut(s)	436, 461, 553
Bst6I	CTCTTC	4 cut(s)	81, 105, 117, 144
BstAFI	CTTAAG	1 cut(s)	482
BstDEI	CTNAG	3 cut(s)	273, 381, 414
BstEII	GGTNACC	1 cut(s)	547
BstKTI	GATC	4 cut(s)	30, 49, 532, 605
BstMBI	GATC	4 cut(s)	27, 46, 529, 602
BstMCI	CGRYCG	1 cut(s)	605
BstNSI	RCATGY	1 cut(s)	457
BstPI	GGTNACC	1 cut(s)	547
BstV1I	GCAGC	2 cut(s)	364, 582
BsuRI	GGCC	1 cut(s)	467
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	3 cut(s)	321, 427, 457
CaiI	CAGNNNCTG	1 cut(s)	380
CciI	TCATGA	2 cut(s)	231, 330
Csp6I	GTAC	1 cut(s)	630
CviAII	CATG	5 cut(s)	38, 232, 268, 331, 454
CviQI	GTAC	1 cut(s)	630
DdeI	CTNAG	3 cut(s)	273, 381, 414
DpnI	GATC	4 cut(s)	29, 48, 531, 604
DpnII	GATC	4 cut(s)	27, 46, 529, 602
Eam1104I	CTCTTC	4 cut(s)	81, 105, 117, 144
EarI	CTCTTC	4 cut(s)	81, 105, 117, 144
Eco147I	AGGCCT	1 cut(s)	467
Eco91I	GGTNACC	1 cut(s)	547
EcoO65I	GGTNACC	1 cut(s)	547
EcoRI	GAATTC	1 cut(s)	33
FaeI	CATG	5 cut(s)	41, 235, 271, 334, 457
FaiI	YATR	7 cut(s)	39, 233, 269, 290, 332, 455, 534
FaqI	GGGAC	2 cut(s)	349, 574
FatI	CATG	5 cut(s)	37, 231, 267, 330, 453
FauI	CCCGC	1 cut(s)	533
FbaI	TGATCA	1 cut(s)	529
FblI	GTMKAC	1 cut(s)	585
Fnu4HI	GCNGC	2 cut(s)	378, 571
Fsp4HI	GCNGC	2 cut(s)	378, 571
FspBI	CTAG	2 cut(s)	537, 581
GluI	GCNGC	2 cut(s)	378, 571
HaeIII	GGCC	1 cut(s)	467
HapII	CCGG	2 cut(s)	20, 639
Hin1II	CATG	5 cut(s)	41, 235, 271, 334, 457
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HpaI	GTTAAC	1 cut(s)	451
HpaII	CCGG	2 cut(s)	20, 639
HphI	GGTGA	3 cut(s)	17, 398, 559
Hpy166II	GTNNAC	5 cut(s)	187, 389, 451, 586, 595
Hpy188I	TCNGA	1 cut(s)	32
Hpy188III	TCNNGA	4 cut(s)	44, 232, 331, 398
Hpy8I	GTNNAC	5 cut(s)	187, 389, 451, 586, 595
HpyAV	CCTTC	5 cut(s)	85, 121, 139, 245, 538
HpyCH4III	ACNGT	3 cut(s)	436, 461, 553
HpyCH4IV	ACGT	1 cut(s)	591
HpyCH4V	TGCA	5 cut(s)	193, 209, 321, 457, 473
HpyF3I	CTNAG	3 cut(s)	273, 381, 414
HpySE526I	ACGT	1 cut(s)	591
Hsp92II	CATG	5 cut(s)	41, 235, 271, 334, 457
Ksp22I	TGATCA	1 cut(s)	529
KspAI	GTTAAC	1 cut(s)	451
Kzo9I	GATC	4 cut(s)	27, 46, 529, 602
LguI	GCTCTTC	1 cut(s)	144
LmnI	GCTCC	3 cut(s)	172, 304, 641
LpnPI	CCDG	8 cut(s)	33, 96, 177, 387, 401, 411, 481, 623
Lsp1109I	GCAGC	2 cut(s)	364, 582
MaeI	CTAG	2 cut(s)	537, 581
MaeII	ACGT	1 cut(s)	591
MaeIII	GTNAC	5 cut(s)	283, 427, 523, 547, 553
MalI	GATC	4 cut(s)	29, 48, 531, 604
MboI	GATC	4 cut(s)	27, 46, 529, 602
MboII	GAAGA	8 cut(s)	20, 68, 98, 122, 127, 134, 154, 161
MluCI	AATT	5 cut(s)	33, 60, 216, 237, 402
MroXI	GAANNNNTTC	1 cut(s)	393
MseI	TTAA	4 cut(s)	63, 78, 450, 483
MspA1I	CMGCKG	1 cut(s)	377
MspCI	CTTAAG	1 cut(s)	482
MspI	CCGG	2 cut(s)	20, 639
NdeII	GATC	4 cut(s)	27, 46, 529, 602
NlaIII	CATG	5 cut(s)	41, 235, 271, 334, 457
NlaIV	GGNNCC	2 cut(s)	306, 643
NmuCI	GTSAC	4 cut(s)	283, 523, 547, 553
NspI	RCATGY	1 cut(s)	457
PagI	TCATGA	2 cut(s)	231, 330
PceI	AGGCCT	1 cut(s)	467
PciSI	GCTCTTC	1 cut(s)	144
PdmI	GAANNNNTTC	1 cut(s)	393
PkrI	GCNGC	2 cut(s)	379, 572
Ple19I	CGATCG	1 cut(s)	605
PspEI	GGTNACC	1 cut(s)	547
PspN4I	GGNNCC	2 cut(s)	306, 643
PstNI	CAGNNNCTG	1 cut(s)	380
PvuI	CGATCG	1 cut(s)	605
PvuII	CAGCTG	1 cut(s)	377
RsaI	GTAC	1 cut(s)	631
RsaNI	GTAC	1 cut(s)	630
SapI	GCTCTTC	1 cut(s)	144
SaqAI	TTAA	4 cut(s)	63, 78, 450, 483
SatI	GCNGC	2 cut(s)	378, 571
Sau3AI	GATC	4 cut(s)	27, 46, 529, 602
SmlI	CTYRAG	3 cut(s)	309, 354, 482
SmoI	CTYRAG	3 cut(s)	309, 354, 482
SpeI	ACTAGT	1 cut(s)	580
Sse9I	AATT	5 cut(s)	33, 60, 216, 237, 402
SseBI	AGGCCT	1 cut(s)	467
SsiI	CCGC	1 cut(s)	540
SspMI	CTAG	2 cut(s)	537, 581
StuI	AGGCCT	1 cut(s)	467
TaaI	ACNGT	3 cut(s)	436, 461, 553
TaiI	ACGT	1 cut(s)	594
TaqI	TCGA	2 cut(s)	45, 605
TasI	AATT	5 cut(s)	33, 60, 216, 237, 402
Tru1I	TTAA	4 cut(s)	63, 78, 450, 483
Tru9I	TTAA	4 cut(s)	63, 78, 450, 483
TscAI	CASTG	3 cut(s)	321, 427, 464
TseFI	GTSAC	4 cut(s)	283, 523, 547, 553
TseI	GCWGC	2 cut(s)	377, 570
Tsp45I	GTSAC	4 cut(s)	283, 523, 547, 553
TspDTI	ATGAA	4 cut(s)	26, 248, 294, 347
TspRI	CASTG	3 cut(s)	321, 427, 464
Vha464I	CTTAAG	1 cut(s)	482
XapI	RAATTY	1 cut(s)	33
XceI	RCATGY	1 cut(s)	457
XmiI	GTMKAC	1 cut(s)	585
XmnI	GAANNNNTTC	1 cut(s)	393
XspI	CTAG	2 cut(s)	537, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.