Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007146

Physical Location & Seq

Genomic Coordinates Reverse (-)

27184024 .. 27185538

Gene Structure 1515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g27450.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGGTGAAGAGGCTAAGCAGGAGCAAGCTAAGGCAGAGGAGAAAGCCGAGGTGAAAGTAGAGGAAAACAAGGACGAGAAGGCAGAGGAGGAAAAGAAGGAAGAGCCGAAGCCGCCTTCTCCTTTTGTGTTGTTTGTAGACTTGCATTGTGTGGGATGTGCAAAGAAGATTGAGAGGTCCATCATGAGAATTAGAGGAGTGGAGGGGGTTGTGACAGACATGGCAAGAAATGAAGTGACCATAAAGGGAATAGTGGAGCCTCAGGCAGTTTGCAACAAAATCATGAAGAAAACCAAGAGAATAGCAAAAGTCTTGTCCCCATTACCAGCTGCTGAGGGTGAAGCTATTCCAGAAGTTGTTGCTTCACAGGTTAGTGGACTAGTAACTGTGGAACTCGAAGTTAACATGCACTGTGAGGCCTGCGCAGAGCAACTCAAGAGAAAGATACTGAAATTCAGAGGAGTTCAAAGTGCTGTAACTGATCATAGTAGCGGGAAGGTGATGGTGACAGGGACCATGGACGGGGATAAGCTAGTAGAATATGTGTATAGACGAACCAAGAAGCAAGCCCGAATAGTCCCACAACCCGAGCACGAACCCGAGAAGAAGGAGGAACCAGCTGCAGAAGAAGCAAAACCCGAAGAGAAGAAAGAAGAAAATGCAGAGAAAAAAGAAGAGGAAAAACCGGCAGAAGGGGAGGCAAAGAAAGAAGAGGGCGGAGCTGAAGGCGGAGAAAGTAGTAATAAGGAGGGGGAGAAAGGTGGTGAGGAGAACAAAGAAGAGGAGAAGAAGGTGGAAGAGATGATGAGTGGCAGTTACGTAAATAGTGGAATGGATGAGGAACATATGAAAAGAACGATGCAGTACTATTACCAACCTCTTTACGTTATTGAGAGAATCCCACCTCCTCAGCTGTTCAGTGATGAGAATCCCAATGCATGTTGCATTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko04978 map04978

Pfam Domains

Protein Families

HMA

Protein Analysis

318

Amino Acids

35.48

Weight (kDa)

5.1

Isoelectric Point (pI)

60.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24580 AT5G24580 AT5G24580 AT5G24580 AT5G24580
fragaria_vesca	FvH4_7g33060
malus_domestica	MD01G1229700.v1.1 MD07G1301700.v1.1
prunus_persica	Prupe.2G320300_v2.0.a1
pyrus_communis	pycom01g23780 pycom07g27450
rosa_chinensis	RchiOBHm_Chr1g0330391 RchiOBHm_Chr1g0383071
rosa_laevigata	RLG00000026135
rosa_multiflora	Rmu_sc0000634.1_g000006 Rmu_sc0008563.1_g000016 Rmu_sc0033623.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277640
rosa_rugosa	Rorug01G0438100
rosa_samantha	Rh1AG463800 Rh1BG421000 Rh1CG434500 Rh1DG453600
rosa_wichuraiana	Rw1G008460 Rw1G040840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	424
AccI	GTMKAC	1 cut(s)	138
AciI	CCGC	4 cut(s)	113, 492, 717, 729
AcsI	RAATTY	1 cut(s)	452
AcuI	CTGAAG	1 cut(s)	744
AfaI	GTAC	1 cut(s)	866
AfiI	CCNNNNNNNGG	2 cut(s)	522, 692
AgsI	TTSAA	1 cut(s)	467
AhlI	ACTAGT	1 cut(s)	379
AluBI	AGCT	7 cut(s)	29, 329, 344, 532, 620, 722, 913
AluI	AGCT	7 cut(s)	29, 329, 344, 532, 620, 722, 913
Alw21I	GWGCWC	1 cut(s)	594
AlwNI	CAGNNNCTG	1 cut(s)	332
Ama87I	CYCGRG	2 cut(s)	587, 599
AoxI	GGCC	1 cut(s)	417
ApeKI	GCWGC	2 cut(s)	329, 620
ApoI	RAATTY	1 cut(s)	452
ArsI	GACNNNNNNTTYG	2 cut(s)	299, 331
Asp700I	GAANNNNTTC	1 cut(s)	345
AspLEI	GCGC	1 cut(s)	425
AspS9I	GGNCC	2 cut(s)	177, 513
AsuHPI	GGTGA	6 cut(s)	17, 64, 350, 511, 517, 776
AvaI	CYCGRG	2 cut(s)	587, 599
AvaII	GGWCC	2 cut(s)	177, 513
AxyI	CCTNAGG	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	594
BbvCI	CCTCAGC	2 cut(s)	333, 909
BbvI	GCAGC	2 cut(s)	316, 607
BccI	CCATC	2 cut(s)	188, 496
BclI	TGATCA	1 cut(s)	481
BcuI	ACTAGT	1 cut(s)	379
BfaI	CTAG	2 cut(s)	380, 533
BfmI	CTRYAG	1 cut(s)	621
BisI	GCNGC	3 cut(s)	113, 330, 621
BlpI	GCTNAGC	1 cut(s)	15
BlsI	GCNGC	3 cut(s)	114, 331, 622
BmcAI	AGTACT	1 cut(s)	866
Bme18I	GGWCC	2 cut(s)	177, 513
BmeT110I	CYCGRG	2 cut(s)	587, 599
BmgT120I	GGNCC	2 cut(s)	177, 513
BmiI	GGNNCC	3 cut(s)	258, 514, 615
BmsI	GCATC	1 cut(s)	849
Bpu10I	CCTNAGC	3 cut(s)	30, 333, 909
Bpu1102I	GCTNAGC	1 cut(s)	15
BpuEI	CTTGAG	1 cut(s)	419
BsaAI	YACGTR	1 cut(s)	820
BsaBI	GATNNNNATC	1 cut(s)	927
BsaJI	CCNNGG	2 cut(s)	48, 516
Bsc4I	CCNNNNNNNGG	2 cut(s)	522, 692
Bse118I	RCCGGY	1 cut(s)	685
Bse21I	CCTNAGG	1 cut(s)	261
Bse8I	GATNNNNATC	1 cut(s)	927
BseDI	CCNNGG	2 cut(s)	48, 516
BseGI	GGATG	2 cut(s)	161, 841
BseJI	GATNNNNATC	1 cut(s)	927
BseLI	CCNNNNNNNGG	2 cut(s)	522, 692
BseMII	CTCAG	3 cut(s)	275, 324, 923
BseRI	GAGGAG	7 cut(s)	53, 101, 210, 474, 782, 797, 897
BseXI	GCAGC	2 cut(s)	316, 607
BshFI	GGCC	1 cut(s)	419
BsiHKAI	GWGCWC	1 cut(s)	594
BsiHKCI	CYCGRG	2 cut(s)	587, 599
BsiSI	CCGG	1 cut(s)	686
BslFI	GGGAC	3 cut(s)	301, 526, 563
BslI	CCNNNNNNNGG	2 cut(s)	522, 692
BsmFI	GGGAC	3 cut(s)	301, 526, 563
BsnI	GGCC	1 cut(s)	419
BsoBI	CYCGRG	2 cut(s)	587, 599
Bsp1286I	GDGCHC	1 cut(s)	594
Bsp143I	GATC	1 cut(s)	481
Bsp1720I	GCTNAGC	1 cut(s)	15
Bsp19I	CCATGG	1 cut(s)	516
BspACI	CCGC	4 cut(s)	113, 492, 717, 729
BspANI	GGCC	1 cut(s)	419
BspCNI	CTCAG	3 cut(s)	274, 325, 922
BspHI	TCATGA	3 cut(s)	183, 282, 950
BspLI	GGNNCC	3 cut(s)	258, 514, 615
BspMAI	CTGCAG	1 cut(s)	625
BspQI	GCTCTTC	1 cut(s)	96
BsrFI	RCCGGY	1 cut(s)	685
BssAI	RCCGGY	1 cut(s)	685
BssECI	CCNNGG	2 cut(s)	48, 516
BssMI	GATC	1 cut(s)	481
BssT1I	CCWWGG	1 cut(s)	516
Bst4CI	ACNGT	2 cut(s)	388, 413
Bst6I	CTCTTC	7 cut(s)	3, 96, 636, 669, 705, 774, 792
BstBAI	YACGTR	1 cut(s)	820
BstC8I	GCNNGC	3 cut(s)	27, 421, 567
BstDEI	CTNAG	5 cut(s)	15, 30, 261, 333, 909
BstDSI	CCRYGG	1 cut(s)	516
BstF5I	GGATG	2 cut(s)	161, 841
BstHHI	GCGC	1 cut(s)	425
BstKTI	GATC	1 cut(s)	484
BstMBI	GATC	1 cut(s)	481
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 629
BstNSI	RCATGY	2 cut(s)	409, 942
BstSFI	CTRYAG	1 cut(s)	621
BstSNI	TACGTA	1 cut(s)	820
BstV1I	GCAGC	2 cut(s)	316, 607
Bsu36I	CCTNAGG	1 cut(s)	261
BsuRI	GGCC	1 cut(s)	419
BtgI	CCRYGG	1 cut(s)	516
BtsCI	GGATG	2 cut(s)	161, 841
BtsIMutI	CAGTG	2 cut(s)	409, 925
Cac8I	GCNNGC	3 cut(s)	27, 421, 567
CaiI	CAGNNNCTG	1 cut(s)	332
CciI	TCATGA	3 cut(s)	183, 282, 950
CfoI	GCGC	1 cut(s)	425
Cfr10I	RCCGGY	1 cut(s)	685
Cfr13I	GGNCC	2 cut(s)	177, 513
Csp6I	GTAC	1 cut(s)	865
CviAII	CATG	7 cut(s)	184, 220, 283, 406, 517, 939, 951
CviQI	GTAC	1 cut(s)	865
DdeI	CTNAG	5 cut(s)	15, 30, 261, 333, 909
DpnI	GATC	1 cut(s)	483
DpnII	GATC	1 cut(s)	481
Eam1104I	CTCTTC	7 cut(s)	3, 96, 636, 669, 705, 774, 792
EarI	CTCTTC	7 cut(s)	3, 96, 636, 669, 705, 774, 792
EciI	GGCGGA	2 cut(s)	732, 744
Eco105I	TACGTA	1 cut(s)	820
Eco130I	CCWWGG	1 cut(s)	516
Eco147I	AGGCCT	1 cut(s)	419
Eco47I	GGWCC	2 cut(s)	177, 513
Eco57I	CTGAAG	1 cut(s)	744
Eco81I	CCTNAGG	1 cut(s)	261
Eco88I	CYCGRG	2 cut(s)	587, 599
EcoT14I	CCWWGG	1 cut(s)	516
EcoT22I	ATGCAT	1 cut(s)	940
ErhI	CCWWGG	1 cut(s)	516
FaeI	CATG	7 cut(s)	187, 223, 286, 409, 520, 942, 954
FaqI	GGGAC	3 cut(s)	301, 526, 563
FatI	CATG	7 cut(s)	183, 219, 282, 405, 516, 938, 950
FauI	CCCGC	1 cut(s)	485
FauNDI	CATATG	1 cut(s)	846
FbaI	TGATCA	1 cut(s)	481
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	3 cut(s)	113, 330, 621
FokI	GGATG	2 cut(s)	168, 848
Fsp4HI	GCNGC	3 cut(s)	113, 330, 621
FspBI	CTAG	2 cut(s)	380, 533
FspI	TGCGCA	1 cut(s)	424
GlaI	GCGC	1 cut(s)	424
GluI	GCNGC	3 cut(s)	113, 330, 621
HaeIII	GGCC	1 cut(s)	419
HapII	CCGG	1 cut(s)	686
HhaI	GCGC	1 cut(s)	425
Hin1II	CATG	7 cut(s)	187, 223, 286, 409, 520, 942, 954
Hin6I	GCGC	1 cut(s)	423
HinP1I	GCGC	1 cut(s)	423
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HinfI	GANTC	2 cut(s)	897, 928
HpaI	GTTAAC	1 cut(s)	403
HpaII	CCGG	1 cut(s)	686
HphI	GGTGA	6 cut(s)	17, 64, 350, 511, 517, 776
Hpy166II	GTNNAC	3 cut(s)	139, 377, 403
Hpy188I	TCNGA	1 cut(s)	458
Hpy188III	TCNNGA	5 cut(s)	184, 283, 350, 436, 951
Hpy8I	GTNNAC	3 cut(s)	139, 377, 403
HpyAV	CCTTC	8 cut(s)	73, 91, 126, 490, 601, 686, 719, 784
HpyCH4III	ACNGT	2 cut(s)	388, 413
HpyCH4IV	ACGT	2 cut(s)	819, 885
HpyCH4V	TGCA	9 cut(s)	145, 161, 273, 409, 623, 662, 862, 938, 945
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 629
HpyF3I	CTNAG	5 cut(s)	15, 30, 261, 333, 909
HpySE526I	ACGT	2 cut(s)	819, 885
Hsp92II	CATG	7 cut(s)	187, 223, 286, 409, 520, 942, 954
HspAI	GCGC	1 cut(s)	423
Ksp22I	TGATCA	1 cut(s)	481
KspAI	GTTAAC	1 cut(s)	403
Kzo9I	GATC	1 cut(s)	481
LguI	GCTCTTC	1 cut(s)	96
LmnI	GCTCC	3 cut(s)	22, 256, 719
LpnPI	CCDG	9 cut(s)	5, 248, 339, 353, 363, 433, 495, 630, 699
Lsp1109I	GCAGC	2 cut(s)	316, 607
LweI	GCATC	1 cut(s)	849
MaeI	CTAG	2 cut(s)	380, 533
MaeII	ACGT	2 cut(s)	819, 885
MaeIII	GTNAC	6 cut(s)	211, 235, 382, 475, 505, 815
MalI	GATC	1 cut(s)	483
MboI	GATC	1 cut(s)	481
MhlI	GDGCHC	1 cut(s)	594
MluCI	AATT	2 cut(s)	189, 452
Mph1103I	ATGCAT	1 cut(s)	940
MroXI	GAANNNNTTC	1 cut(s)	345
MseI	TTAA	1 cut(s)	402
MspA1I	CMGCKG	3 cut(s)	329, 620, 913
MspI	CCGG	1 cut(s)	686
MwoI	GCNNNNNNNGC	2 cut(s)	112, 629
NcoI	CCATGG	1 cut(s)	516
NdeI	CATATG	1 cut(s)	846
NdeII	GATC	1 cut(s)	481
NlaIII	CATG	7 cut(s)	187, 223, 286, 409, 520, 942, 954
NlaIV	GGNNCC	3 cut(s)	258, 514, 615
NmeAIII	GCCGAG	1 cut(s)	73
NmuCI	GTSAC	3 cut(s)	211, 235, 505
NsbI	TGCGCA	1 cut(s)	424
NsiI	ATGCAT	1 cut(s)	940
NspI	RCATGY	2 cut(s)	409, 942
PagI	TCATGA	3 cut(s)	183, 282, 950
PceI	AGGCCT	1 cut(s)	419
PciSI	GCTCTTC	1 cut(s)	96
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	2 cut(s)	897, 928
PkrI	GCNGC	3 cut(s)	114, 331, 622
Ppu21I	YACGTR	1 cut(s)	820
PspN4I	GGNNCC	3 cut(s)	258, 514, 615
PspPI	GGNCC	2 cut(s)	177, 513
PstI	CTGCAG	1 cut(s)	625
PstNI	CAGNNNCTG	1 cut(s)	332
PvuII	CAGCTG	3 cut(s)	329, 620, 913
RsaI	GTAC	1 cut(s)	866
RsaNI	GTAC	1 cut(s)	865
SapI	GCTCTTC	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	3 cut(s)	113, 330, 621
Sau3AI	GATC	1 cut(s)	481
Sau96I	GGNCC	2 cut(s)	177, 513
ScaI	AGTACT	1 cut(s)	866
SduI	GDGCHC	1 cut(s)	594
SfaNI	GCATC	1 cut(s)	849
SfcI	CTRYAG	1 cut(s)	621
SinI	GGWCC	2 cut(s)	177, 513
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
SnaBI	TACGTA	1 cut(s)	820
SpeI	ACTAGT	1 cut(s)	379
Sse9I	AATT	2 cut(s)	189, 452
SseBI	AGGCCT	1 cut(s)	419
SsiI	CCGC	4 cut(s)	113, 492, 717, 729
SspMI	CTAG	2 cut(s)	380, 533
StuI	AGGCCT	1 cut(s)	419
StyI	CCWWGG	1 cut(s)	516
TaaI	ACNGT	2 cut(s)	388, 413
TaiI	ACGT	2 cut(s)	822, 888
TaqI	TCGA	1 cut(s)	396
TasI	AATT	2 cut(s)	189, 452
TatI	WGTACW	1 cut(s)	864
TauI	GCSGC	1 cut(s)	115
TfiI	GAWTC	2 cut(s)	897, 928
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	2 cut(s)	416, 925
TseFI	GTSAC	3 cut(s)	211, 235, 505
TseI	GCWGC	2 cut(s)	329, 620
Tsp45I	GTSAC	3 cut(s)	211, 235, 505
TspDTI	ATGAA	4 cut(s)	246, 299, 863, 939
TspRI	CASTG	2 cut(s)	416, 925
VpaK11BI	GGWCC	2 cut(s)	177, 513
XapI	RAATTY	1 cut(s)	452
XceI	RCATGY	2 cut(s)	409, 942
XmiI	GTMKAC	1 cut(s)	138
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	2 cut(s)	380, 533
ZrmI	AGTACT	1 cut(s)	866
Zsp2I	ATGCAT	1 cut(s)	940

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.