AT5G26610

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010106
Physical Location & Seq
Forward (+)
9375089 .. 9377168
2080 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G26610.2

Sequence Viewer

Length: 906 bp
ATGGATATTAGCCGGCGTGAAAGTAAGACGGAAGCAAGTAGTAGAGAGAAACGGATTTATGAGAAAGATCAGATGAATCAAGAGTCTTTTATTGAGGGATTGGCAGAGGAGTTTCGGTTGCCAATTACTCATAGGGTTACTGAAAATGTTGATTTGGAGGATGTGGAGCAAGCTTCGTTAGATGTAAAGATATCGTCGTCGAATGTCGGGTTTCGTCTTCTTCAGAAAATGGGTTGGAAAGGAAAAGGTCTTGGAAAGCAAGAGCAAGGTATAACGGAGCCTATAAAGTCCGGTATAAGAGATCGAAGACTCGGTTTAGGGAAACAAGAAGAAGATGATTATTTCACTGCAGAGGAAAACATCCAGCGGAAGAAACTTGATATCGAGATTGAGGAGACTGAGGAAATCGCAAAGAAACGGGAGGTCCTAGCAGAACGTGAGCAGAAGATCCAGAGCGATGTTAAAGAAATCCGTAAAGTCTTCTATTGTGAACTATGCAGCAAACAGTATAGAACGGTGATGGAGTTTGAAGGTCACTTGAGCTCATACGATCACAACCATAAGAAGCGATTCAAAGAAATGAAAGAAATGCACGGAGCAAGCGGCCGCGATGAGAGGAAGAAACGAGAGCAGCAACGTCAAGAGAGGGAGATGACTAAAATGGCTGATGCTCGCAAACAACATCAGATGCAACAGAGCCAGCAAGAAGTCCCAGAGAATGTCCCGGTTTCTGCACCGGCTAAGACCACGGTTGCACCACTTGCTGTCCAAGATCAGCGAAAAACATTGAAGTTTGGCTTCTCTTCTAAAAGCGGCATTATATCAAAGAGCCAACCCACAAGCAGCATCAAGAAGCCGAAAGTAGCAATCGCGTCCGTTTTCGGGAACGATAGCGACGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch zf-C2H2_jaz

Protein Analysis

301

Amino Acids

34.81

Weight (kDa)

8.29

Isoelectric Point (pI)

65.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch PF01585 67 - 107 1.1e-16 G-patch domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 609, 872
AciI CCGC 4 cut(s) 367, 603, 607, 813
AclWI GGATC 1 cut(s) 442
AcoI YGGCCR 1 cut(s) 604
AcuI CTGAAG 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 882
AgsI TTSAA 3 cut(s) 530, 574, 790
AluBI AGCT 2 cut(s) 173, 543
AluI AGCT 2 cut(s) 173, 543
Alw21I GWGCWC 1 cut(s) 545
Alw26I GTCTC 1 cut(s) 389
AlwI GGATC 1 cut(s) 442
AoxI GGCC 1 cut(s) 604
ApeKI GCWGC 3 cut(s) 498, 631, 843
Asp700I GAANNNNTTC 1 cut(s) 569
AspS9I GGNCC 1 cut(s) 424
AsuC2I CCSGG 1 cut(s) 725
AsuHPI GGTGA 1 cut(s) 529
AvaII GGWCC 1 cut(s) 424
BanII GRGCYC 1 cut(s) 545
BbsI GAAGAC 3 cut(s) 209, 313, 472
Bbv12I GWGCWC 1 cut(s) 545
BbvI GCAGC 3 cut(s) 510, 643, 855
BccI CCATC 1 cut(s) 514
BcnI CCSGG 1 cut(s) 725
BcoDI GTCTC 1 cut(s) 389
BfaI CTAG 1 cut(s) 428
BfmI CTRYAG 1 cut(s) 348
BisI GCNGC 6 cut(s) 499, 604, 607, 632, 814, 844
BlsI GCNGC 6 cut(s) 500, 605, 608, 633, 815, 845
Bme1390I CCNGG 1 cut(s) 725
Bme18I GGWCC 1 cut(s) 424
BmgT120I GGNCC 1 cut(s) 424
BmiI GGNNCC 1 cut(s) 279
BmrFI CCNGG 1 cut(s) 725
BmsI GCATC 3 cut(s) 658, 678, 855
BpiI GAAGAC 3 cut(s) 209, 313, 472
BpuEI CTTGAG 1 cut(s) 559
BpuMI CCSGG 1 cut(s) 725
BsaJI CCNNGG 1 cut(s) 747
BsaWI WCCGGW 1 cut(s) 290
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 1 cut(s) 882
Bse118I RCCGGY 2 cut(s) 12, 736
BseDI CCNNGG 1 cut(s) 747
BseGI GGATG 2 cut(s) 166, 360
BseLI CCNNNNNNNGG 1 cut(s) 882
BseMII CTCAG 1 cut(s) 390
BseRI GAGGAG 2 cut(s) 122, 407
BseX3I CGGCCG 1 cut(s) 604
BseXI GCAGC 3 cut(s) 510, 643, 855
BsgI GTGCAG 1 cut(s) 717
Bsh1236I CGCG 2 cut(s) 609, 872
Bsh1285I CGRYCG 1 cut(s) 607
BshFI GGCC 1 cut(s) 606
BsiEI CGRYCG 1 cut(s) 607
BsiHKAI GWGCWC 1 cut(s) 545
BsiSI CCGG 4 cut(s) 13, 291, 725, 737
BslFI GGGAC 2 cut(s) 695, 707
BslI CCNNNNNNNGG 1 cut(s) 882
BsmAI GTCTC 1 cut(s) 389
BsmFI GGGAC 2 cut(s) 695, 707
BsnI GGCC 1 cut(s) 606
Bsp1286I GDGCHC 1 cut(s) 545
Bsp143I GATC 5 cut(s) 67, 301, 447, 550, 772
BspACI CCGC 4 cut(s) 367, 603, 607, 813
BspANI GGCC 1 cut(s) 606
BspCNI CTCAG 1 cut(s) 391
BspFNI CGCG 2 cut(s) 609, 872
BspLI GGNNCC 1 cut(s) 279
BspMAI CTGCAG 1 cut(s) 352
BspPI GGATC 1 cut(s) 442
BsrFI RCCGGY 2 cut(s) 12, 736
BssAI RCCGGY 2 cut(s) 12, 736
BssECI CCNNGG 1 cut(s) 747
BssMI GATC 5 cut(s) 67, 301, 447, 550, 772
Bst4CI ACNGT 3 cut(s) 507, 517, 751
Bst6I CTCTTC 1 cut(s) 808
BstAPI GCANNNNNTGC 1 cut(s) 761
BstC8I GCNNGC 5 cut(s) 14, 171, 601, 673, 701
BstDEI CTNAG 2 cut(s) 399, 741
BstDSI CCRYGG 1 cut(s) 747
BstF5I GGATG 2 cut(s) 166, 360
BstFNI CGCG 2 cut(s) 609, 872
BstKTI GATC 5 cut(s) 70, 304, 450, 553, 775
BstMAI GTCTC 1 cut(s) 389
BstMBI GATC 5 cut(s) 67, 301, 447, 550, 772
BstMCI CGRYCG 1 cut(s) 607
BstMWI GCNNNNNNNGC 1 cut(s) 761
BstSCI CCNGG 1 cut(s) 723
BstSFI CTRYAG 1 cut(s) 348
BstUI CGCG 2 cut(s) 609, 872
BstV1I GCAGC 3 cut(s) 510, 643, 855
BstV2I GAAGAC 3 cut(s) 209, 313, 472
BstX2I RGATCY 1 cut(s) 447
BstYI RGATCY 1 cut(s) 447
BstZI CGGCCG 1 cut(s) 604
BsuRI GGCC 1 cut(s) 606
BtgI CCRYGG 1 cut(s) 747
BtgZI GCGATG 2 cut(s) 471, 624
BtsCI GGATG 2 cut(s) 166, 360
BtsI GCAGTG 1 cut(s) 345
BtsIMutI CAGTG 1 cut(s) 345
Cac8I GCNNGC 5 cut(s) 14, 171, 601, 673, 701
CciNI GCGGCCGC 1 cut(s) 604
Cfr10I RCCGGY 2 cut(s) 12, 736
Cfr13I GGNCC 1 cut(s) 424
CseI GACGC 1 cut(s) 861
DdeI CTNAG 2 cut(s) 399, 741
DpnI GATC 5 cut(s) 69, 303, 449, 552, 774
DpnII GATC 5 cut(s) 67, 301, 447, 550, 772
EaeI YGGCCR 1 cut(s) 604
EagI CGGCCG 1 cut(s) 604
Eam1104I CTCTTC 1 cut(s) 808
EarI CTCTTC 1 cut(s) 808
Ecl136II GAGCTC 1 cut(s) 543
EclXI CGGCCG 1 cut(s) 604
Eco24I GRGCYC 1 cut(s) 545
Eco32I GATATC 2 cut(s) 192, 382
Eco47I GGWCC 1 cut(s) 424
Eco52I CGGCCG 1 cut(s) 604
Eco53kI GAGCTC 1 cut(s) 543
Eco57I CTGAAG 1 cut(s) 206
EcoICRI GAGCTC 1 cut(s) 543
EcoO109I RGGNCCY 1 cut(s) 424
EcoRV GATATC 2 cut(s) 192, 382
EcoT38I GRGCYC 1 cut(s) 545
FalI AAGNNNNNCTT 2 cut(s) 782, 814
FaqI GGGAC 2 cut(s) 695, 707
Fnu4HI GCNGC 6 cut(s) 499, 604, 607, 632, 814, 844
FokI GGATG 2 cut(s) 173, 347
FriOI GRGCYC 1 cut(s) 545
Fsp4HI GCNGC 6 cut(s) 499, 604, 607, 632, 814, 844
FspBI CTAG 1 cut(s) 428
GluI GCNGC 6 cut(s) 499, 604, 607, 632, 814, 844
HaeIII GGCC 1 cut(s) 606
HapII CCGG 4 cut(s) 13, 291, 725, 737
HgaI GACGC 1 cut(s) 861
HindIII AAGCTT 1 cut(s) 171
HinfI GANTC 4 cut(s) 76, 83, 309, 570
HpaII CCGG 4 cut(s) 13, 291, 725, 737
HphI GGTGA 1 cut(s) 529
Hpy166II GTNNAC 1 cut(s) 491
Hpy188I TCNGA 3 cut(s) 72, 225, 687
Hpy188III TCNNGA 6 cut(s) 80, 385, 451, 641, 850, 883
Hpy8I GTNNAC 1 cut(s) 491
Hpy99I CGWCG 3 cut(s) 199, 202, 899
HpyAV CCTTC 1 cut(s) 524
HpyCH4III ACNGT 3 cut(s) 507, 517, 751
HpyCH4IV ACGT 2 cut(s) 436, 637
HpyCH4V TGCA 6 cut(s) 350, 498, 592, 691, 734, 755
HpyF10VI GCNNNNNNNGC 1 cut(s) 761
HpyF3I CTNAG 2 cut(s) 399, 741
HpySE526I ACGT 2 cut(s) 436, 637
KroI GCCGGC 1 cut(s) 12
KroNI GCCGGC 1 cut(s) 14
Kzo9I GATC 5 cut(s) 67, 301, 447, 550, 772
LmnI GCTCC 3 cut(s) 166, 277, 596
LpnPI CCDG 8 cut(s) 26, 304, 377, 464, 713, 726, 738, 750
Lsp1109I GCAGC 3 cut(s) 510, 643, 855
LweI GCATC 3 cut(s) 658, 678, 855
MaeI CTAG 1 cut(s) 428
MaeII ACGT 2 cut(s) 436, 637
MaeIII GTNAC 2 cut(s) 136, 533
MalI GATC 5 cut(s) 69, 303, 449, 552, 774
MboI GATC 5 cut(s) 67, 301, 447, 550, 772
MflI RGATCY 1 cut(s) 447
MhlI GDGCHC 1 cut(s) 545
MluCI AATT 1 cut(s) 123
MlyI GAGTC 2 cut(s) 92, 303
MmeI TCCRAC 1 cut(s) 215
MnlI CCTC 9 cut(s) 88, 100, 151, 346, 385, 394, 415, 609, 639
MroNI GCCGGC 1 cut(s) 12
MroXI GAANNNNTTC 1 cut(s) 569
MseI TTAA 2 cut(s) 462, 904
MspA1I CMGCKG 1 cut(s) 367
MspI CCGG 4 cut(s) 13, 291, 725, 737
MspR9I CCNGG 1 cut(s) 725
MvnI CGCG 2 cut(s) 609, 872
MwoI GCNNNNNNNGC 1 cut(s) 761
NaeI GCCGGC 1 cut(s) 14
NciI CCSGG 1 cut(s) 725
NdeII GATC 5 cut(s) 67, 301, 447, 550, 772
NgoMIV GCCGGC 1 cut(s) 12
NlaIV GGNNCC 1 cut(s) 279
NmuCI GTSAC 1 cut(s) 533
NotI GCGGCCGC 1 cut(s) 604
PcsI WCGNNNNNNNCGW 1 cut(s) 894
PdiI GCCGGC 1 cut(s) 14
PdmI GAANNNNTTC 1 cut(s) 569
PfeI GAWTC 2 cut(s) 76, 570
PkrI GCNGC 6 cut(s) 500, 605, 608, 633, 815, 845
PleI GAGTC 2 cut(s) 91, 303
PpsI GAGTC 2 cut(s) 91, 303
PpuMI RGGWCCY 1 cut(s) 424
Psp124BI GAGCTC 1 cut(s) 545
Psp5II RGGWCCY 1 cut(s) 424
PspN4I GGNNCC 1 cut(s) 279
PspPI GGNCC 1 cut(s) 424
PspPPI RGGWCCY 1 cut(s) 424
PstI CTGCAG 1 cut(s) 352
PsuI RGATCY 1 cut(s) 447
SacI GAGCTC 1 cut(s) 545
SaqAI TTAA 2 cut(s) 462, 904
SatI GCNGC 6 cut(s) 499, 604, 607, 632, 814, 844
Sau3AI GATC 5 cut(s) 67, 301, 447, 550, 772
Sau96I GGNCC 1 cut(s) 424
SchI GAGTC 2 cut(s) 92, 303
ScrFI CCNGG 1 cut(s) 725
SduI GDGCHC 1 cut(s) 545
SetI ASST 8 cut(s) 175, 250, 271, 426, 439, 535, 545, 640
SfaNI GCATC 3 cut(s) 658, 678, 855
SfcI CTRYAG 1 cut(s) 348
SinI GGWCC 1 cut(s) 424
SmlI CTYRAG 1 cut(s) 538
SmoI CTYRAG 1 cut(s) 538
Sse9I AATT 1 cut(s) 123
SsiI CCGC 4 cut(s) 367, 603, 607, 813
SspMI CTAG 1 cut(s) 428
SstI GAGCTC 1 cut(s) 545
StyD4I CCNGG 1 cut(s) 723
TaaI ACNGT 3 cut(s) 507, 517, 751
TaiI ACGT 2 cut(s) 439, 640
TaqI TCGA 3 cut(s) 200, 304, 384
TasI AATT 1 cut(s) 123
TauI GCSGC 3 cut(s) 606, 609, 816
TfiI GAWTC 2 cut(s) 76, 570
Tru1I TTAA 2 cut(s) 462, 904
Tru9I TTAA 2 cut(s) 462, 904
TscAI CASTG 1 cut(s) 352
TseFI GTSAC 1 cut(s) 533
TseI GCWGC 3 cut(s) 498, 631, 843
Tsp45I GTSAC 1 cut(s) 533
TspDTI ATGAA 2 cut(s) 89, 596
TspGWI ACGGA 6 cut(s) 44, 67, 290, 461, 609, 865
TspRI CASTG 1 cut(s) 352
VpaK11BI GGWCC 1 cut(s) 424
XmnI GAANNNNTTC 1 cut(s) 569
XspI CTAG 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.