Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001634.1

Orthogroup ID

OG0010106

Physical Location & Seq

Genomic Coordinates Reverse (-)

9870 .. 11552

Gene Structure 1683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001634.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atgtccaaccggtggtataacaatagactggaaacaagcacccgagacaaacagcaacatgagaaggagcaggcatatcaggagtcacttcttgatgagtttgcagaagaggaatttagacttcctattaatcaaaggccaacagaaaatgttgatctggaacatgtggaacaagcgtcattggacagacagttaccatcatctaacattggttttcggcttctccagaaaatggggtggaaggggaaggggctcggtaaagatgaacaaggaattgttgagccaataaaatctgggattagagacccaaaactaggagttggaaaacaagaagaagatgattattttacagcagaagaaaatattcaaagaagaaaacttgatgttgagatggaagagactgaggaacatgcaaagaagcgggaggttttagcagaacgtgagcagaaaattcaaactgaggtgaaagaaatacgcaaggtgttctactgtgacctgtgcaacaaacaatacaaattggctgtggaatttgaaggtcacttgagctcctatgatcataatcacaggaagcgttttaaagaaatgaaagaaatgcatggtacaagtagtcgggatgatcgtcaaaaacgggagcagcagcgccaggagagggaaatggcaaagtttgctcagatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch zf-C2H2_jaz

Protein Analysis

225

Amino Acids

26.95

Weight (kDa)

5.91

Isoelectric Point (pI)

62.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26610 AT5G26610 AT5G26610
fragaria_vesca	FvH4_6g08510
malus_domestica	MD12G1199800.v1.1
prunus_persica	Prupe.6G304400_v2.0.a1 Prupe.6G304400_v2.0.a1 Prupe.6G304400_v2.0.a1 Prupe.6G304400_v2.0.a1 Prupe.6G304400_v2.0.a1
pyrus_communis	pycom12g18650
rosa_chinensis	RchiOBHm_Chr3g0458551
rosa_laevigata	RLG00000025148
rosa_multiflora	Rmu_sc0001634.1_g000003
rosa_roxburghii	Rroxscaffold_6G00420980
rosa_rugosa	Rorug03G0029700
rosa_samantha	Rh3AG088000 Rh3BG091100 Rh3CG091200 Rh3DG092000
rosa_wichuraiana	Rw3G007520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	12, 232
AciI	CCGC	1 cut(s)	421
AcsI	RAATTY	3 cut(s)	113, 450, 527
AfaI	GTAC	1 cut(s)	601
AfiI	CCNNNNNNNGG	4 cut(s)	12, 232, 314, 649
AflIII	ACRYGT	1 cut(s)	163
AgeI	ACCGGT	1 cut(s)	9
AgsI	TTSAA	3 cut(s)	368, 455, 533
AjnI	CCWGG	1 cut(s)	642
AluBI	AGCT	1 cut(s)	546
AluI	AGCT	1 cut(s)	546
Alw21I	GWGCWC	1 cut(s)	548
Alw26I	GTCTC	3 cut(s)	39, 297, 392
Ama87I	CYCGRG	1 cut(s)	42
AoxI	GGCC	1 cut(s)	137
ApeKI	GCWGC	2 cut(s)	634, 637
ApoI	RAATTY	3 cut(s)	113, 450, 527
AseI	ATTAAT	1 cut(s)	129
AsiGI	ACCGGT	1 cut(s)	9
Asp700I	GAANNNNTTC	1 cut(s)	363
AspLEI	GCGC	1 cut(s)	642
AsuHPI	GGTGA	1 cut(s)	475
AvaI	CYCGRG	1 cut(s)	42
BanII	GRGCYC	2 cut(s)	255, 548
Bbv12I	GWGCWC	1 cut(s)	548
BbvI	GCAGC	2 cut(s)	646, 649
BccI	CCATC	2 cut(s)	205, 385
BciT130I	CCWGG	1 cut(s)	644
BclI	TGATCA	1 cut(s)	553
BcoDI	GTCTC	3 cut(s)	39, 297, 392
BfaI	CTAG	1 cut(s)	314
BfoI	RGCGCY	1 cut(s)	643
BisI	GCNGC	2 cut(s)	635, 638
BlsI	GCNGC	2 cut(s)	636, 639
Bme1390I	CCNGG	1 cut(s)	644
BmeT110I	CYCGRG	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	644
BpmI	CTGGAG	1 cut(s)	209
BpuEI	CTTGAG	1 cut(s)	562
BsaBI	GATNNNNATC	1 cut(s)	558
BsaI	GGTCTC	1 cut(s)	297
BsaWI	WCCGGW	1 cut(s)	9
BsaXI	ACNNNNNCTCC	2 cut(s)	530, 560
Bsc4I	CCNNNNNNNGG	4 cut(s)	12, 232, 314, 649
Bse118I	RCCGGY	1 cut(s)	9
Bse1I	ACTGG	1 cut(s)	33
Bse8I	GATNNNNATC	1 cut(s)	558
BseBI	CCWGG	1 cut(s)	644
BseGI	GGATG	1 cut(s)	619
BseJI	GATNNNNATC	1 cut(s)	558
BseLI	CCNNNNNNNGG	4 cut(s)	12, 232, 314, 649
BseMII	CTCAG	2 cut(s)	393, 450
BseNI	ACTGG	1 cut(s)	33
BseXI	GCAGC	2 cut(s)	646, 649
BshFI	GGCC	1 cut(s)	139
BshTI	ACCGGT	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	548
BsiHKCI	CYCGRG	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	10
BslI	CCNNNNNNNGG	4 cut(s)	12, 232, 314, 649
BsmAI	GTCTC	3 cut(s)	39, 297, 392
BsnI	GGCC	1 cut(s)	139
Bso31I	GGTCTC	1 cut(s)	297
BsoBI	CYCGRG	1 cut(s)	42
Bsp1286I	GDGCHC	2 cut(s)	255, 548
Bsp143I	GATC	3 cut(s)	154, 553, 616
BspACI	CCGC	1 cut(s)	421
BspANI	GGCC	1 cut(s)	139
BspCNI	CTCAG	2 cut(s)	394, 451
BspTNI	GGTCTC	1 cut(s)	297
BsrFI	RCCGGY	1 cut(s)	9
BsrI	ACTGG	1 cut(s)	33
BssAI	RCCGGY	1 cut(s)	9
BssMI	GATC	3 cut(s)	154, 553, 616
Bst2UI	CCWGG	1 cut(s)	644
Bst4CI	ACNGT	2 cut(s)	192, 491
Bst6I	CTCTTC	2 cut(s)	102, 390
BstAPI	GCANNNNNTGC	1 cut(s)	665
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	3 cut(s)	402, 459, 669
BstF5I	GGATG	1 cut(s)	619
BstH2I	RGCGCY	1 cut(s)	643
BstHHI	GCGC	1 cut(s)	642
BstKTI	GATC	3 cut(s)	157, 556, 619
BstMAI	GTCTC	3 cut(s)	39, 297, 392
BstMBI	GATC	3 cut(s)	154, 553, 616
BstMWI	GCNNNNNNNGC	1 cut(s)	665
BstNI	CCWGG	1 cut(s)	644
BstNSI	RCATGY	2 cut(s)	167, 413
BstSCI	CCNGG	1 cut(s)	642
BstV1I	GCAGC	2 cut(s)	646, 649
BsuRI	GGCC	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	619
Cac8I	GCNNGC	1 cut(s)	72
CfoI	GCGC	1 cut(s)	642
Cfr10I	RCCGGY	1 cut(s)	9
CseI	GACGC	1 cut(s)	165
Csp6I	GTAC	1 cut(s)	600
CspAI	ACCGGT	1 cut(s)	9
CviAII	CATG	4 cut(s)	59, 164, 410, 596
CviJI	RGCY	6 cut(s)	139, 220, 253, 283, 521, 546
CviKI_1	RGCY	6 cut(s)	139, 220, 253, 283, 521, 546
CviQI	GTAC	1 cut(s)	600
DdeI	CTNAG	3 cut(s)	402, 459, 669
DpnI	GATC	3 cut(s)	156, 555, 618
DpnII	GATC	3 cut(s)	154, 553, 616
DraI	TTTAAA	1 cut(s)	577
Eam1104I	CTCTTC	2 cut(s)	102, 390
EarI	CTCTTC	2 cut(s)	102, 390
Ecl136II	GAGCTC	1 cut(s)	546
Eco24I	GRGCYC	2 cut(s)	255, 548
Eco31I	GGTCTC	1 cut(s)	297
Eco53kI	GAGCTC	1 cut(s)	546
Eco88I	CYCGRG	1 cut(s)	42
EcoICRI	GAGCTC	1 cut(s)	546
EcoRII	CCWGG	1 cut(s)	642
EcoT22I	ATGCAT	1 cut(s)	597
EcoT38I	GRGCYC	2 cut(s)	255, 548
FaeI	CATG	4 cut(s)	62, 167, 413, 599
FaiI	YATR	8 cut(s)	18, 60, 76, 165, 411, 552, 558, 597
FatI	CATG	4 cut(s)	58, 163, 409, 595
FauI	CCCGC	1 cut(s)	414
FbaI	TGATCA	1 cut(s)	553
Fnu4HI	GCNGC	2 cut(s)	635, 638
FokI	GGATG	1 cut(s)	626
FriOI	GRGCYC	2 cut(s)	255, 548
Fsp4HI	GCNGC	2 cut(s)	635, 638
FspBI	CTAG	1 cut(s)	314
GlaI	GCGC	1 cut(s)	641
GluI	GCNGC	2 cut(s)	635, 638
GsuI	CTGGAG	1 cut(s)	209
HaeII	RGCGCY	1 cut(s)	643
HaeIII	GGCC	1 cut(s)	139
HapII	CCGG	1 cut(s)	10
HgaI	GACGC	1 cut(s)	165
HhaI	GCGC	1 cut(s)	642
Hin1II	CATG	4 cut(s)	62, 167, 413, 599
Hin6I	GCGC	1 cut(s)	640
HinP1I	GCGC	1 cut(s)	640
HinfI	GANTC	1 cut(s)	83
HpaII	CCGG	1 cut(s)	10
HphI	GGTGA	1 cut(s)	475
Hpy188I	TCNGA	1 cut(s)	672
Hpy188III	TCNNGA	5 cut(s)	80, 92, 158, 226, 611
HpyAV	CCTTC	4 cut(s)	58, 235, 241, 527
HpyCH4III	ACNGT	2 cut(s)	192, 491
HpyCH4IV	ACGT	1 cut(s)	439
HpyCH4V	TGCA	4 cut(s)	104, 413, 501, 595
HpyF10VI	GCNNNNNNNGC	1 cut(s)	665
HpyF3I	CTNAG	3 cut(s)	402, 459, 669
HpySE526I	ACGT	1 cut(s)	439
Hsp92II	CATG	4 cut(s)	62, 167, 413, 599
HspAI	GCGC	1 cut(s)	640
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	3 cut(s)	154, 553, 616
LmnI	GCTCC	3 cut(s)	67, 551, 631
Lsp1109I	GCAGC	2 cut(s)	646, 649
MaeI	CTAG	1 cut(s)	314
MaeII	ACGT	1 cut(s)	439
MaeIII	GTNAC	4 cut(s)	84, 192, 491, 536
MalI	GATC	3 cut(s)	156, 555, 618
MboI	GATC	3 cut(s)	154, 553, 616
MboII	GAAGA	6 cut(s)	119, 344, 347, 368, 384, 407
MhlI	GDGCHC	2 cut(s)	255, 548
MluCI	AATT	5 cut(s)	113, 273, 450, 515, 527
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	2 cut(s)	30, 301
MnlI	CCTC	5 cut(s)	103, 397, 418, 454, 642
Mph1103I	ATGCAT	1 cut(s)	597
MroXI	GAANNNNTTC	1 cut(s)	363
MseI	TTAA	2 cut(s)	129, 576
MspI	CCGG	1 cut(s)	10
MspR9I	CCNGG	1 cut(s)	644
MvaI	CCWGG	1 cut(s)	644
MwoI	GCNNNNNNNGC	1 cut(s)	665
NdeII	GATC	3 cut(s)	154, 553, 616
NlaIII	CATG	4 cut(s)	62, 167, 413, 599
NmuCI	GTSAC	3 cut(s)	84, 491, 536
NsiI	ATGCAT	1 cut(s)	597
NspI	RCATGY	2 cut(s)	167, 413
PciI	ACATGT	1 cut(s)	163
PcsI	WCGNNNNNNNCGW	1 cut(s)	616
PdmI	GAANNNNTTC	1 cut(s)	363
PflMI	CCANNNNNTGG	2 cut(s)	12, 232
PinAI	ACCGGT	1 cut(s)	9
PkrI	GCNGC	2 cut(s)	636, 639
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PscI	ACATGT	1 cut(s)	163
PshBI	ATTAAT	1 cut(s)	129
Psp124BI	GAGCTC	1 cut(s)	548
Psp6I	CCWGG	1 cut(s)	642
PspGI	CCWGG	1 cut(s)	642
RsaI	GTAC	1 cut(s)	601
RsaNI	GTAC	1 cut(s)	600
SacI	GAGCTC	1 cut(s)	548
SaqAI	TTAA	2 cut(s)	129, 576
SatI	GCNGC	2 cut(s)	635, 638
Sau3AI	GATC	3 cut(s)	154, 553, 616
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	1 cut(s)	644
SduI	GDGCHC	2 cut(s)	255, 548
SetI	ASST	7 cut(s)	429, 442, 465, 483, 498, 538, 548
SmlI	CTYRAG	1 cut(s)	541
SmoI	CTYRAG	1 cut(s)	541
Sse9I	AATT	5 cut(s)	113, 273, 450, 515, 527
SsiI	CCGC	1 cut(s)	421
SspI	AATATT	1 cut(s)	364
SspMI	CTAG	1 cut(s)	314
SstI	GAGCTC	1 cut(s)	548
StyD4I	CCNGG	1 cut(s)	642
TaaI	ACNGT	2 cut(s)	192, 491
TaiI	ACGT	1 cut(s)	442
TasI	AATT	5 cut(s)	113, 273, 450, 515, 527
Tru1I	TTAA	2 cut(s)	129, 576
Tru9I	TTAA	2 cut(s)	129, 576
TseFI	GTSAC	3 cut(s)	84, 491, 536
TseI	GCWGC	2 cut(s)	634, 637
Tsp45I	GTSAC	3 cut(s)	84, 491, 536
TspDTI	ATGAA	2 cut(s)	279, 599
Van91I	CCANNNNNTGG	2 cut(s)	12, 232
VspI	ATTAAT	1 cut(s)	129
XapI	RAATTY	3 cut(s)	113, 450, 527
XceI	RCATGY	2 cut(s)	167, 413
XmnI	GAANNNNTTC	1 cut(s)	363
XspI	CTAG	1 cut(s)	314
Zsp2I	ATGCAT	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.