Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0010106

Physical Location & Seq

Genomic Coordinates Forward (+)

27538736 .. 27543941

Gene Structure 5206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G304400.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCCTACCGGTATAAAGGTAGACAGGAAACAAGCACCCGAGGCAACCAGCCAAATGAGAAAGATCAGGCATATCAGGATTCACTAGTTGATGATCTAGCCGAGGAATTTCGACTGCCAATTAATCACAGGCCAACGGAAAATGTCAATCTGGAAAATGTGGAACAAGCATCATTGGACACACACATAGCATCATCTAACATTGGTTTTAGGCTTCTCCAAAAGATGGGGTGGAAAGGGAAGGGGCTTGGGAAGGATGAGCAAGGAATCACTGAGCCAATAAAATCTGGGATTAGAGATCCAAAATTAGGAGTTGGAAAACAAGAGGAAGATGATTATTTTACAGCAGAAGAAAATATCCAGAGAAGAAAACTTGATGTTGAAATTGAAGAGACTGAGGAGCATGCAAAGAAGCGGGAGGTGTTAGCAGAACGTGAGCAGAAAATTCAAACTGAGGTGAAAGAAATACACAAGGTGTTCTACTGTGATCTTTGCAACAAACAATACAAGTTGGCTGTGGAATTTGAAGCTCACTTGAGCTCATATGATCACAATCACAGAAAGCGTTTTAAAGAAATGAAAGAAATGCATGGTTCCAGTAGTCGGGATGATCGCCAGAAACGAGAGCAGCAGCGTCAGGAAAAGGAAATGGCAAAGTTTGTTCAGATTGCGGACGCCAGGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAAGAAGAATCTGGATCTGCCCCGGCTTCCACTGAACTGACAAGTGCTACTACACTTGCAGACCAGGATCAACGGAAGGCATTGAAATTTGGGTTTTCTTCTAAAGGTGGCACGTCTAAGAGCTCGTTCAGTAGTGTTGCAAAGAAGCCAAAAGTTCCTGTGGCCTCAGTGTTTGGCAATGATAGCGATGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch zf-C2H2_jaz

Protein Analysis

304

Amino Acids

34.8

Weight (kDa)

6.01

Isoelectric Point (pI)

63.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26610 AT5G26610 AT5G26610
fragaria_vesca	FvH4_6g08510
malus_domestica	MD12G1199800.v1.1
prunus_persica	Prupe.6G304400_v2.0.a1 Prupe.6G304400_v2.0.a1 Prupe.6G304400_v2.0.a1 Prupe.6G304400_v2.0.a1 Prupe.6G304400_v2.0.a1
pyrus_communis	pycom12g18650
rosa_chinensis	RchiOBHm_Chr3g0458551
rosa_laevigata	RLG00000025148
rosa_multiflora	Rmu_sc0001634.1_g000003
rosa_roxburghii	Rroxscaffold_6G00420980
rosa_rugosa	Rorug03G0029700
rosa_samantha	Rh3AG088000 Rh3BG091100 Rh3CG091200 Rh3DG092000
rosa_wichuraiana	Rw3G007520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	226
AccI	GTMKAC	1 cut(s)	22
AciI	CCGC	2 cut(s)	415, 671
AclWI	GGATC	3 cut(s)	293, 736, 789
AcsI	RAATTY	4 cut(s)	107, 444, 521, 800
AcyI	GRCGYC	1 cut(s)	675
AdeI	CACNNNGTG	1 cut(s)	475
AfiI	CCNNNNNNNGG	3 cut(s)	226, 308, 603
AgeI	ACCGGT	1 cut(s)	9
AgsI	TTSAA	5 cut(s)	383, 389, 449, 527, 799
AhlI	ACTAGT	1 cut(s)	85
AjiI	CACGTC	1 cut(s)	828
AjnI	CCWGG	2 cut(s)	677, 777
AluBI	AGCT	3 cut(s)	530, 540, 837
AluI	AGCT	3 cut(s)	530, 540, 837
Alw21I	GWGCWC	2 cut(s)	542, 839
Alw26I	GTCTC	1 cut(s)	386
AlwI	GGATC	3 cut(s)	293, 736, 789
Ama87I	CYCGRG	1 cut(s)	39
AoxI	GGCC	3 cut(s)	3, 131, 876
ApoI	RAATTY	4 cut(s)	107, 444, 521, 800
AseI	ATTAAT	1 cut(s)	123
AsiGI	ACCGGT	1 cut(s)	9
AsuC2I	CCSGG	1 cut(s)	737
AsuHPI	GGTGA	1 cut(s)	469
AvaI	CYCGRG	1 cut(s)	39
BanII	GRGCYC	2 cut(s)	542, 839
Bbv12I	GWGCWC	2 cut(s)	542, 839
BccI	CCATC	1 cut(s)	220
BciT130I	CCWGG	2 cut(s)	679, 779
BclI	TGATCA	1 cut(s)	547
BcnI	CCSGG	1 cut(s)	737
BcoDI	GTCTC	1 cut(s)	386
BcuI	ACTAGT	1 cut(s)	85
BfaI	CTAG	2 cut(s)	86, 98
Bme1390I	CCNGG	3 cut(s)	679, 737, 779
BmeT110I	CYCGRG	1 cut(s)	39
BmgBI	CACGTC	1 cut(s)	828
BmiI	GGNNCC	1 cut(s)	595
BmrFI	CCNGG	3 cut(s)	679, 737, 779
BmsI	GCATC	2 cut(s)	179, 200
BpuEI	CTTGAG	1 cut(s)	556
BpuMI	CCSGG	1 cut(s)	737
BsaBI	GATNNNNATC	1 cut(s)	552
BsaHI	GRCGYC	1 cut(s)	675
BsaJI	CCNNGG	3 cut(s)	40, 102, 735
BsaWI	WCCGGW	1 cut(s)	9
Bsc4I	CCNNNNNNNGG	3 cut(s)	226, 308, 603
Bse118I	RCCGGY	1 cut(s)	9
Bse1I	ACTGG	1 cut(s)	597
Bse3DI	GCAATG	1 cut(s)	898
Bse8I	GATNNNNATC	1 cut(s)	552
BseBI	CCWGG	2 cut(s)	679, 779
BseDI	CCNNGG	3 cut(s)	40, 102, 735
BseGI	GGATG	2 cut(s)	262, 613
BseJI	GATNNNNATC	1 cut(s)	552
BseLI	CCNNNNNNNGG	3 cut(s)	226, 308, 603
BseMI	GCAATG	1 cut(s)	898
BseMII	CTCAG	4 cut(s)	264, 387, 444, 894
BseNI	ACTGG	1 cut(s)	597
BseRI	GAGGAG	1 cut(s)	413
BshFI	GGCC	3 cut(s)	5, 133, 878
BshTI	ACCGGT	1 cut(s)	9
BsiHKAI	GWGCWC	2 cut(s)	542, 839
BsiHKCI	CYCGRG	1 cut(s)	39
BsiSI	CCGG	2 cut(s)	10, 737
BslI	CCNNNNNNNGG	3 cut(s)	226, 308, 603
BsmAI	GTCTC	1 cut(s)	386
BsnI	GGCC	3 cut(s)	5, 133, 878
BsoBI	CYCGRG	1 cut(s)	39
Bsp1286I	GDGCHC	2 cut(s)	542, 839
Bsp143I	GATC	8 cut(s)	64, 94, 298, 487, 547, 610, 728, 781
BspACI	CCGC	2 cut(s)	415, 671
BspANI	GGCC	3 cut(s)	5, 133, 878
BspCNI	CTCAG	4 cut(s)	265, 388, 445, 893
BspLI	GGNNCC	1 cut(s)	595
BspPI	GGATC	3 cut(s)	293, 736, 789
BsrDI	GCAATG	1 cut(s)	898
BsrFI	RCCGGY	1 cut(s)	9
BsrI	ACTGG	1 cut(s)	597
BssAI	RCCGGY	1 cut(s)	9
BssECI	CCNNGG	3 cut(s)	40, 102, 735
BssMI	GATC	8 cut(s)	64, 94, 298, 487, 547, 610, 728, 781
BssNI	GRCGYC	1 cut(s)	675
Bst2UI	CCWGG	2 cut(s)	679, 779
Bst4CI	ACNGT	1 cut(s)	485
Bst6I	CTCTTC	2 cut(s)	384, 900
BstACI	GRCGYC	1 cut(s)	675
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	5 cut(s)	273, 396, 453, 831, 880
BstF5I	GGATG	2 cut(s)	262, 613
BstKTI	GATC	8 cut(s)	67, 97, 301, 490, 550, 613, 731, 784
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	8 cut(s)	64, 94, 298, 487, 547, 610, 728, 781
BstMWI	GCNNNNNNNGC	9 cut(s)	42, 691, 694, 697, 700, 703, 706, 709, 897
BstNI	CCWGG	2 cut(s)	679, 779
BstNSI	RCATGY	1 cut(s)	407
BstSCI	CCNGG	3 cut(s)	677, 735, 777
BstX2I	RGATCY	2 cut(s)	298, 728
BstYI	RGATCY	2 cut(s)	298, 728
BsuRI	GGCC	3 cut(s)	5, 133, 878
BtrI	CACGTC	1 cut(s)	828
BtsCI	GGATG	2 cut(s)	262, 613
BtsIMutI	CAGTG	3 cut(s)	270, 744, 888
Cac8I	GCNNGC	1 cut(s)	405
Cfr10I	RCCGGY	1 cut(s)	9
CseI	GACGC	2 cut(s)	623, 683
CspAI	ACCGGT	1 cut(s)	9
CviAII	CATG	2 cut(s)	404, 590
DdeI	CTNAG	5 cut(s)	273, 396, 453, 831, 880
DpnI	GATC	8 cut(s)	66, 96, 300, 489, 549, 612, 730, 783
DpnII	GATC	8 cut(s)	64, 94, 298, 487, 547, 610, 728, 781
DraI	TTTAAA	1 cut(s)	571
DraIII	CACNNNGTG	1 cut(s)	475
Eam1104I	CTCTTC	2 cut(s)	384, 900
EarI	CTCTTC	2 cut(s)	384, 900
Ecl136II	GAGCTC	2 cut(s)	540, 837
Eco24I	GRGCYC	2 cut(s)	542, 839
Eco53kI	GAGCTC	2 cut(s)	540, 837
Eco88I	CYCGRG	1 cut(s)	39
EcoICRI	GAGCTC	2 cut(s)	540, 837
EcoRII	CCWGG	2 cut(s)	677, 777
EcoT22I	ATGCAT	1 cut(s)	591
EcoT38I	GRGCYC	2 cut(s)	542, 839
FaeI	CATG	2 cut(s)	407, 593
FaiI	YATR	7 cut(s)	15, 73, 188, 405, 544, 546, 591
FatI	CATG	2 cut(s)	403, 589
FauI	CCCGC	1 cut(s)	408
FauNDI	CATATG	1 cut(s)	544
FbaI	TGATCA	1 cut(s)	547
FblI	GTMKAC	1 cut(s)	22
FokI	GGATG	2 cut(s)	269, 620
FriOI	GRGCYC	2 cut(s)	542, 839
FspBI	CTAG	2 cut(s)	86, 98
HaeIII	GGCC	3 cut(s)	5, 133, 878
HapII	CCGG	2 cut(s)	10, 737
HgaI	GACGC	2 cut(s)	623, 683
Hin1I	GRCGYC	1 cut(s)	675
Hin1II	CATG	2 cut(s)	407, 593
HinfI	GANTC	3 cut(s)	80, 267, 722
HpaII	CCGG	2 cut(s)	10, 737
HphI	GGTGA	1 cut(s)	469
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	1 cut(s)	666
Hpy188III	TCNNGA	6 cut(s)	77, 152, 361, 605, 638, 726
Hpy8I	GTNNAC	1 cut(s)	23
HpyAV	CCTTC	3 cut(s)	235, 247, 784
HpyCH4III	ACNGT	1 cut(s)	485
HpyCH4IV	ACGT	2 cut(s)	433, 827
HpyCH4V	TGCA	5 cut(s)	407, 495, 589, 773, 854
HpyF10VI	GCNNNNNNNGC	9 cut(s)	42, 691, 694, 697, 700, 703, 706, 709, 897
HpyF3I	CTNAG	5 cut(s)	273, 396, 453, 831, 880
HpySE526I	ACGT	2 cut(s)	433, 827
Hsp92I	GRCGYC	1 cut(s)	675
Hsp92II	CATG	2 cut(s)	407, 593
Ksp22I	TGATCA	1 cut(s)	547
Kzo9I	GATC	8 cut(s)	64, 94, 298, 487, 547, 610, 728, 781
LmnI	GCTCC	1 cut(s)	400
LweI	GCATC	2 cut(s)	179, 200
MaeI	CTAG	2 cut(s)	86, 98
MaeII	ACGT	2 cut(s)	433, 827
MalI	GATC	8 cut(s)	66, 96, 300, 489, 549, 612, 730, 783
MboI	GATC	8 cut(s)	64, 94, 298, 487, 547, 610, 728, 781
MboII	GAAGA	7 cut(s)	341, 362, 378, 401, 728, 731, 804
MflI	RGATCY	2 cut(s)	298, 728
MhlI	GDGCHC	2 cut(s)	542, 839
MluCI	AATT	7 cut(s)	107, 120, 305, 384, 444, 521, 800
MmeI	TCCRAC	1 cut(s)	295
MnlI	CCTC	7 cut(s)	35, 97, 319, 391, 412, 448, 889
Mph1103I	ATGCAT	1 cut(s)	591
MseI	TTAA	2 cut(s)	123, 570
MspI	CCGG	2 cut(s)	10, 737
MspR9I	CCNGG	3 cut(s)	679, 737, 779
MvaI	CCWGG	2 cut(s)	679, 779
MwoI	GCNNNNNNNGC	9 cut(s)	42, 691, 694, 697, 700, 703, 706, 709, 897
NciI	CCSGG	1 cut(s)	737
NdeI	CATATG	1 cut(s)	544
NdeII	GATC	8 cut(s)	64, 94, 298, 487, 547, 610, 728, 781
NlaIII	CATG	2 cut(s)	407, 593
NlaIV	GGNNCC	1 cut(s)	595
NmeAIII	GCCGAG	1 cut(s)	127
NsiI	ATGCAT	1 cut(s)	591
NspI	RCATGY	1 cut(s)	407
PaeI	GCATGC	1 cut(s)	407
PcsI	WCGNNNNNNNCGW	1 cut(s)	619
PfeI	GAWTC	3 cut(s)	80, 267, 722
PflMI	CCANNNNNTGG	1 cut(s)	226
PinAI	ACCGGT	1 cut(s)	9
PshBI	ATTAAT	1 cut(s)	123
Psp124BI	GAGCTC	2 cut(s)	542, 839
Psp6I	CCWGG	2 cut(s)	677, 777
PspGI	CCWGG	2 cut(s)	677, 777
PspN4I	GGNNCC	1 cut(s)	595
PsuI	RGATCY	2 cut(s)	298, 728
SacI	GAGCTC	2 cut(s)	542, 839
SaqAI	TTAA	2 cut(s)	123, 570
Sau3AI	GATC	8 cut(s)	64, 94, 298, 487, 547, 610, 728, 781
ScrFI	CCNGG	3 cut(s)	679, 737, 779
SduI	GDGCHC	2 cut(s)	542, 839
SfaNI	GCATC	2 cut(s)	179, 200
SmlI	CTYRAG	1 cut(s)	535
SmoI	CTYRAG	1 cut(s)	535
SpeI	ACTAGT	1 cut(s)	85
SphI	GCATGC	1 cut(s)	407
Sse9I	AATT	7 cut(s)	107, 120, 305, 384, 444, 521, 800
SsiI	CCGC	2 cut(s)	415, 671
SspMI	CTAG	2 cut(s)	86, 98
SstI	GAGCTC	2 cut(s)	542, 839
StyD4I	CCNGG	3 cut(s)	677, 735, 777
TaaI	ACNGT	1 cut(s)	485
TaiI	ACGT	2 cut(s)	436, 830
TaqI	TCGA	1 cut(s)	112
TasI	AATT	7 cut(s)	107, 120, 305, 384, 444, 521, 800
TfiI	GAWTC	3 cut(s)	80, 267, 722
Tru1I	TTAA	2 cut(s)	123, 570
Tru9I	TTAA	2 cut(s)	123, 570
TscAI	CASTG	3 cut(s)	277, 751, 888
TspDTI	ATGAA	1 cut(s)	593
TspGWI	ACGGA	2 cut(s)	152, 802
TspRI	CASTG	3 cut(s)	277, 751, 888
Van91I	CCANNNNNTGG	1 cut(s)	226
VspI	ATTAAT	1 cut(s)	123
XapI	RAATTY	4 cut(s)	107, 444, 521, 800
XceI	RCATGY	1 cut(s)	407
XmiI	GTMKAC	1 cut(s)	22
XspI	CTAG	2 cut(s)	86, 98
Zsp2I	ATGCAT	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.