Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0010106

Physical Location & Seq

Genomic Coordinates Forward (+)

20775810 .. 20779488

Gene Structure 3679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g18650.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGATTTTTTATGAGATTGTAAGAGTGAGGTGGGTCAGAAAACAGAGCCGGTTCAAGATCCGGAGAGCATCTTTGGTTCTTTCATTCGCCAGAAATTTTGGCTGCGTCAATCCAGGTAACATCATGGCCTACCGGTATAACGGTAGACAGGAAACAAGCACCCGAGGCAACCCGCAACATCAGAAAGAGCAGGCATATCAGGGTTCACTAGTTGATGATCTAGCAGAAGAATTTCGATTGCCGATTAATCAAAGGCCCACAGAAAATGTTGATCTGGAGAATGTGGAACAAGCATCATTGGACACACACATAGCATCATCTAATGTTGGTTTTAGGCTTCTCCAAAAGATGGGGTGGAAAGGGAAGGGGCTTGGGAAGGATGAGCAAGGAATTACTGAGCCAATAAAATCTGGGATTAGAGACCCAAAATTAGGAGTTGGAAAACAAGAGGAAGATGATTATTATACAGCAGAAGAAAATATCCAGAGAAGAAAACTCGATGTGGAATTAGAAGAGACCGAGGAAATTGCAAAGAAGCGGGAGGTATTAGCAGAACGTGAGCAGAAAATCCAAATCGAGGTGAAAGAAATACGCAAGGTGTTCTACTGTGAACTCTGCAGCAAACAATACAAGTTGGCCGTGGAATTTGAAGCTCACTTAAGCTCATACGATCACAATCACAGAAAGCGTTTTAAAGAAATGAAAGAAATGCACGGTTCCAGTAGTCGGGATGACCGCCAAAAACGAGAGCAACAGCGTCAGGAGAAGGAAATGGCAAAGTTTGTTCAGATTGCGGATGCTCGTAAGCAGCAGCAGCAGCAGCAGTTACAACAGCAACAAGAAGAATCTGGGCCTGCCCCAGTTTCCACTGAACTGAAAAGTGCTACTACACTTGCAGATCATGATCAACGGAAGGCTTTGAAATTTGGGTTTTCTTCTAAAGGTGCAACCTCTAAGTCTAAGATCTCGTTTGGTAGTGCTGCAAAGAAGCCAAAAGTCGGTGTGGCCTCAGTATTCGGCAATGATAGCGATGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch zf-C2H2_jaz

Protein Analysis

347

Amino Acids

39.88

Weight (kDa)

9.06

Isoelectric Point (pI)

54.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26610 AT5G26610 AT5G26610
fragaria_vesca	FvH4_6g08510
malus_domestica	MD12G1199800.v1.1
prunus_persica	Prupe.6G304400_v2.0.a1 Prupe.6G304400_v2.0.a1 Prupe.6G304400_v2.0.a1 Prupe.6G304400_v2.0.a1 Prupe.6G304400_v2.0.a1
pyrus_communis	pycom12g18650
rosa_chinensis	RchiOBHm_Chr3g0458551
rosa_laevigata	RLG00000025148
rosa_multiflora	Rmu_sc0001634.1_g000003
rosa_roxburghii	Rroxscaffold_6G00420980
rosa_rugosa	Rorug03G0029700
rosa_samantha	Rh3AG088000 Rh3BG091100 Rh3CG091200 Rh3DG092000
rosa_wichuraiana	Rw3G007520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	349
AccI	GTMKAC	1 cut(s)	145
AccIII	TCCGGA	1 cut(s)	60
AciI	CCGC	4 cut(s)	173, 538, 736, 794
AclWI	GGATC	1 cut(s)	52
AcoI	YGGCCR	1 cut(s)	636
AcsI	RAATTY	4 cut(s)	94, 230, 644, 923
AfiI	CCNNNNNNNGG	5 cut(s)	349, 431, 577, 726, 998
AflII	CTTAAG	1 cut(s)	658
AgeI	ACCGGT	1 cut(s)	132
AgsI	TTSAA	3 cut(s)	55, 650, 922
AhlI	ACTAGT	1 cut(s)	208
AjnI	CCWGG	1 cut(s)	112
AluBI	AGCT	2 cut(s)	653, 663
AluI	AGCT	2 cut(s)	653, 663
Alw26I	GTCTC	2 cut(s)	414, 509
AlwI	GGATC	1 cut(s)	52
Ama87I	CYCGRG	1 cut(s)	162
Aor13HI	TCCGGA	1 cut(s)	60
AoxI	GGCC	5 cut(s)	126, 254, 636, 851, 1005
ApeKI	GCWGC	8 cut(s)	102, 618, 808, 811, 814, 817, 820, 980
ApoI	RAATTY	4 cut(s)	94, 230, 644, 923
AseI	ATTAAT	1 cut(s)	246
AsiGI	ACCGGT	1 cut(s)	132
Asp700I	GAANNNNTTC	1 cut(s)	231
AspS9I	GGNCC	2 cut(s)	255, 851
AsuHPI	GGTGA	1 cut(s)	592
AvaI	CYCGRG	1 cut(s)	162
BbvI	GCAGC	8 cut(s)	89, 630, 820, 823, 826, 829, 832, 967
BccI	CCATC	1 cut(s)	343
BceAI	ACGGC	1 cut(s)	623
BcgI	CGANNNNNNTGC	2 cut(s)	509, 543
BciT130I	CCWGG	1 cut(s)	114
BclI	TGATCA	1 cut(s)	904
BcoDI	GTCTC	2 cut(s)	414, 509
BcuI	ACTAGT	1 cut(s)	208
BfaI	CTAG	2 cut(s)	209, 221
BfmI	CTRYAG	1 cut(s)	616
BfrI	CTTAAG	1 cut(s)	658
BglII	AGATCT	1 cut(s)	963
BisI	GCNGC	8 cut(s)	103, 619, 809, 812, 815, 818, 821, 981
BlsI	GCNGC	8 cut(s)	104, 620, 810, 813, 816, 819, 822, 982
Bme1390I	CCNGG	1 cut(s)	114
BmeT110I	CYCGRG	1 cut(s)	162
BmgT120I	GGNCC	2 cut(s)	255, 851
BmiI	GGNNCC	1 cut(s)	718
BmrFI	CCNGG	1 cut(s)	114
BmrI	ACTGGG	1 cut(s)	854
BmsI	GCATC	4 cut(s)	77, 302, 323, 787
BmuI	ACTGGG	1 cut(s)	854
BpmI	CTGGAG	1 cut(s)	296
BsaBI	GATNNNNATC	2 cut(s)	675, 903
BsaI	GGTCTC	2 cut(s)	414, 509
BsaJI	CCNNGG	3 cut(s)	163, 519, 639
BsaWI	WCCGGW	2 cut(s)	60, 132
Bsc4I	CCNNNNNNNGG	5 cut(s)	349, 431, 577, 726, 998
Bse118I	RCCGGY	2 cut(s)	48, 132
Bse1I	ACTGG	2 cut(s)	720, 860
Bse3DI	GCAATG	1 cut(s)	1027
Bse8I	GATNNNNATC	2 cut(s)	675, 903
BseAI	TCCGGA	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	114
BseDI	CCNNGG	3 cut(s)	163, 519, 639
BseGI	GGATG	3 cut(s)	385, 736, 802
BseJI	GATNNNNATC	2 cut(s)	675, 903
BseLI	CCNNNNNNNGG	5 cut(s)	349, 431, 577, 726, 998
BseMI	GCAATG	1 cut(s)	1027
BseMII	CTCAG	2 cut(s)	387, 1023
BseNI	ACTGG	2 cut(s)	720, 860
BseXI	GCAGC	8 cut(s)	89, 630, 820, 823, 826, 829, 832, 967
BshFI	GGCC	5 cut(s)	128, 256, 638, 853, 1007
BshTI	ACCGGT	1 cut(s)	132
BsiHKCI	CYCGRG	1 cut(s)	162
BsiSI	CCGG	3 cut(s)	49, 61, 133
BslI	CCNNNNNNNGG	5 cut(s)	349, 431, 577, 726, 998
BsmAI	GTCTC	2 cut(s)	414, 509
BsnI	GGCC	5 cut(s)	128, 256, 638, 853, 1007
Bso31I	GGTCTC	2 cut(s)	414, 509
BsoBI	CYCGRG	1 cut(s)	162
Bsp13I	TCCGGA	1 cut(s)	60
Bsp143I	GATC	7 cut(s)	57, 217, 271, 670, 898, 904, 963
BspACI	CCGC	4 cut(s)	173, 538, 736, 794
BspANI	GGCC	5 cut(s)	128, 256, 638, 853, 1007
BspCNI	CTCAG	2 cut(s)	388, 1022
BspEI	TCCGGA	1 cut(s)	60
BspHI	TCATGA	1 cut(s)	901
BspLI	GGNNCC	1 cut(s)	718
BspMAI	CTGCAG	1 cut(s)	620
BspPI	GGATC	1 cut(s)	52
BspTI	CTTAAG	1 cut(s)	658
BspTNI	GGTCTC	2 cut(s)	414, 509
BsrDI	GCAATG	1 cut(s)	1027
BsrFI	RCCGGY	2 cut(s)	48, 132
BsrI	ACTGG	2 cut(s)	720, 860
BssAI	RCCGGY	2 cut(s)	48, 132
BssECI	CCNNGG	3 cut(s)	163, 519, 639
BssMI	GATC	7 cut(s)	57, 217, 271, 670, 898, 904, 963
Bst2UI	CCWGG	1 cut(s)	114
Bst4CI	ACNGT	3 cut(s)	143, 608, 716
Bst6I	CTCTTC	2 cut(s)	507, 1029
BstAFI	CTTAAG	1 cut(s)	658
BstC8I	GCNNGC	2 cut(s)	192, 855
BstDEI	CTNAG	4 cut(s)	396, 954, 960, 1009
BstDSI	CCRYGG	1 cut(s)	639
BstF5I	GGATG	3 cut(s)	385, 736, 802
BstKTI	GATC	7 cut(s)	60, 220, 274, 673, 901, 907, 966
BstMAI	GTCTC	2 cut(s)	414, 509
BstMBI	GATC	7 cut(s)	57, 217, 271, 670, 898, 904, 963
BstMWI	GCNNNNNNNGC	5 cut(s)	165, 814, 817, 820, 1026
BstNI	CCWGG	1 cut(s)	114
BstSCI	CCNGG	1 cut(s)	112
BstSFI	CTRYAG	1 cut(s)	616
BstV1I	GCAGC	8 cut(s)	89, 630, 820, 823, 826, 829, 832, 967
BstX2I	RGATCY	2 cut(s)	57, 963
BstYI	RGATCY	2 cut(s)	57, 963
BsuRI	GGCC	5 cut(s)	128, 256, 638, 853, 1007
BtgI	CCRYGG	1 cut(s)	639
BtsCI	GGATG	3 cut(s)	385, 736, 802
BtsIMutI	CAGTG	1 cut(s)	867
Cac8I	GCNNGC	2 cut(s)	192, 855
CciI	TCATGA	1 cut(s)	901
Cfr10I	RCCGGY	2 cut(s)	48, 132
Cfr13I	GGNCC	2 cut(s)	255, 851
CseI	GACGC	2 cut(s)	94, 746
CspAI	ACCGGT	1 cut(s)	132
CviAII	CATG	2 cut(s)	124, 902
DdeI	CTNAG	4 cut(s)	396, 954, 960, 1009
DpnI	GATC	7 cut(s)	59, 219, 273, 672, 900, 906, 965
DpnII	GATC	7 cut(s)	57, 217, 271, 670, 898, 904, 963
DraI	TTTAAA	1 cut(s)	694
EaeI	YGGCCR	1 cut(s)	636
Eam1104I	CTCTTC	2 cut(s)	507, 1029
EarI	CTCTTC	2 cut(s)	507, 1029
Eco31I	GGTCTC	2 cut(s)	414, 509
Eco88I	CYCGRG	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	112
FaeI	CATG	2 cut(s)	127, 905
FaiI	YATR	8 cut(s)	12, 125, 138, 196, 311, 465, 667, 903
FatI	CATG	2 cut(s)	123, 901
FauI	CCCGC	2 cut(s)	180, 531
FbaI	TGATCA	1 cut(s)	904
FblI	GTMKAC	1 cut(s)	145
Fnu4HI	GCNGC	8 cut(s)	103, 619, 809, 812, 815, 818, 821, 981
FokI	GGATG	3 cut(s)	392, 743, 809
Fsp4HI	GCNGC	8 cut(s)	103, 619, 809, 812, 815, 818, 821, 981
FspBI	CTAG	2 cut(s)	209, 221
GluI	GCNGC	8 cut(s)	103, 619, 809, 812, 815, 818, 821, 981
GsuI	CTGGAG	1 cut(s)	296
HaeIII	GGCC	5 cut(s)	128, 256, 638, 853, 1007
HapII	CCGG	3 cut(s)	49, 61, 133
HgaI	GACGC	2 cut(s)	94, 746
Hin1II	CATG	2 cut(s)	127, 905
HinfI	GANTC	1 cut(s)	845
HpaII	CCGG	3 cut(s)	49, 61, 133
HphI	GGTGA	1 cut(s)	592
Hpy166II	GTNNAC	3 cut(s)	146, 206, 611
Hpy188I	TCNGA	3 cut(s)	38, 183, 789
Hpy188III	TCNNGA	7 cut(s)	55, 61, 275, 484, 728, 761, 902
Hpy8I	GTNNAC	3 cut(s)	146, 206, 611
HpyAV	CCTTC	4 cut(s)	358, 370, 760, 907
HpyCH4III	ACNGT	3 cut(s)	143, 608, 716
HpyCH4IV	ACGT	1 cut(s)	556
HpyCH4V	TGCA	6 cut(s)	530, 618, 712, 896, 947, 983
HpyF10VI	GCNNNNNNNGC	5 cut(s)	165, 814, 817, 820, 1026
HpyF3I	CTNAG	4 cut(s)	396, 954, 960, 1009
HpySE526I	ACGT	1 cut(s)	556
Hsp92II	CATG	2 cut(s)	127, 905
Kpn2I	TCCGGA	1 cut(s)	60
Ksp22I	TGATCA	1 cut(s)	904
Kzo9I	GATC	7 cut(s)	57, 217, 271, 670, 898, 904, 963
Lsp1109I	GCAGC	8 cut(s)	89, 630, 820, 823, 826, 829, 832, 967
LweI	GCATC	4 cut(s)	77, 302, 323, 787
MaeI	CTAG	2 cut(s)	209, 221
MaeII	ACGT	1 cut(s)	556
MaeIII	GTNAC	2 cut(s)	116, 825
MalI	GATC	7 cut(s)	59, 219, 273, 672, 900, 906, 965
MboI	GATC	7 cut(s)	57, 217, 271, 670, 898, 904, 963
MboII	GAAGA	7 cut(s)	239, 464, 485, 501, 524, 854, 927
MflI	RGATCY	2 cut(s)	57, 963
MluCI	AATT	8 cut(s)	94, 230, 390, 428, 506, 525, 644, 923
MmeI	TCCRAC	1 cut(s)	418
MnlI	CCTC	8 cut(s)	21, 158, 442, 514, 535, 571, 961, 1018
MroI	TCCGGA	1 cut(s)	60
MroXI	GAANNNNTTC	1 cut(s)	231
MseI	TTAA	3 cut(s)	246, 659, 693
MspCI	CTTAAG	1 cut(s)	658
MspI	CCGG	3 cut(s)	49, 61, 133
MspR9I	CCNGG	1 cut(s)	114
MvaI	CCWGG	1 cut(s)	114
MwoI	GCNNNNNNNGC	5 cut(s)	165, 814, 817, 820, 1026
NdeII	GATC	7 cut(s)	57, 217, 271, 670, 898, 904, 963
NlaIII	CATG	2 cut(s)	127, 905
NlaIV	GGNNCC	1 cut(s)	718
PagI	TCATGA	1 cut(s)	901
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	845
PflMI	CCANNNNNTGG	1 cut(s)	349
PinAI	ACCGGT	1 cut(s)	132
PkrI	GCNGC	8 cut(s)	104, 620, 810, 813, 816, 819, 822, 982
PshBI	ATTAAT	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	112
PspN4I	GGNNCC	1 cut(s)	718
PspPI	GGNCC	2 cut(s)	255, 851
PstI	CTGCAG	1 cut(s)	620
PsuI	RGATCY	2 cut(s)	57, 963
SaqAI	TTAA	3 cut(s)	246, 659, 693
SatI	GCNGC	8 cut(s)	103, 619, 809, 812, 815, 818, 821, 981
Sau3AI	GATC	7 cut(s)	57, 217, 271, 670, 898, 904, 963
Sau96I	GGNCC	2 cut(s)	255, 851
ScrFI	CCNGG	1 cut(s)	114
SfaNI	GCATC	4 cut(s)	77, 302, 323, 787
SfcI	CTRYAG	1 cut(s)	616
SmlI	CTYRAG	1 cut(s)	658
SmoI	CTYRAG	1 cut(s)	658
SpeI	ACTAGT	1 cut(s)	208
Sse9I	AATT	8 cut(s)	94, 230, 390, 428, 506, 525, 644, 923
SsiI	CCGC	4 cut(s)	173, 538, 736, 794
SspMI	CTAG	2 cut(s)	209, 221
StyD4I	CCNGG	1 cut(s)	112
TaaI	ACNGT	3 cut(s)	143, 608, 716
TaiI	ACGT	1 cut(s)	559
TaqI	TCGA	3 cut(s)	235, 498, 576
TaqII	GACCGA	1 cut(s)	533
TasI	AATT	8 cut(s)	94, 230, 390, 428, 506, 525, 644, 923
TfiI	GAWTC	1 cut(s)	845
Tru1I	TTAA	3 cut(s)	246, 659, 693
Tru9I	TTAA	3 cut(s)	246, 659, 693
TscAI	CASTG	1 cut(s)	874
TseI	GCWGC	8 cut(s)	102, 618, 808, 811, 814, 817, 820, 980
TspDTI	ATGAA	2 cut(s)	72, 716
TspGWI	ACGGA	1 cut(s)	925
TspRI	CASTG	1 cut(s)	874
Van91I	CCANNNNNTGG	1 cut(s)	349
Vha464I	CTTAAG	1 cut(s)	658
VspI	ATTAAT	1 cut(s)	246
XapI	RAATTY	4 cut(s)	94, 230, 644, 923
XmiI	GTMKAC	1 cut(s)	145
XmnI	GAANNNNTTC	1 cut(s)	231
XspI	CTAG	2 cut(s)	209, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.