RchiOBHm_Chr3g0458551

G patch domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0010106
Physical Location & Seq
Reverse (-)
7196397 .. 7199994
3598 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42520

Sequence Viewer

Length: 924 bp
ATGTCCAACCGGTGGTATAACAATAGACAGGAAACAAGCACCCGAGACAAACAGCAACATGAGAAGGAGCAGGCATATCAGGAGTCACTTCTTGATGATTTTGCAGAGGAATTTAGACTTCCTATTAATCAAAGGCCAACAGAAAATGTTGATCTGGAACATGTGGAACAAGCGTCATTGGACAGACAGTTACCATCATCTAACATTGGTTTTCGGCTTCTCCAGAAAATGGGGTGGAAGGGGAAGGGGCTCGGTAAAGATGAACAAGGAATTGTTGAGCCAATAAAATCTGGGATTAGAGACCCAAAACTAGGAGTTGGAAAACAAGAAGAAGATGATTATTTTACAGCAGAAGAAAATATTCAAAGAAGAAAACTTGATGTTGAGATGGAAGAGACTGAGGAACATGCAAAGAAGCGGGAGGTTTTAGCAGAACGTGAGCAGAAAATTCAAACTGAGGTGAAAGAAATACGCAAGGTGTTCTACTGTGACCTGTGCAACAAACAATACAAATTGGCTGTGGAATTTGAAGGTCACTTGAGCTCCTATGATCATAATCACAGGAAGCGTTTTAAAGAAATGAAAGAAATGCATGGTACAAGTAGTCGGGATGATCGTCAAAAACGGGAGCAGCAGCGCCAGGAGAGGGAAATGGCAAAGTTTGCTCAGATGAGTGCCGACGCCCGTAAGCAGCAGCAGCAGCAGCTACAACAACAGCAAGAAGAATCTGCATCAGCCCCGGGTTCTGCTGAACTGAGAAGTGCTACTGCACTTGCAGATCAAGATCAAAGGAAGGCCTTGAAATTTGGGTTTTCTTCTAAAGGTGGCACCTCTAAGACCTCGTTTGGTAGTGCTTCAAAGAAGCCAAAAGTAGCAAAAGTAGCTGTGGCCTCAGTATTTGGCAATGATAGTGATGAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch zf-C2H2_jaz

Protein Analysis

307

Amino Acids

35.52

Weight (kDa)

6.45

Isoelectric Point (pI)

62.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch PF01585 67 - 107 4.8e-16 G-patch domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 827
AccB7I CCANNNNNTGG 2 cut(s) 12, 229
AciI CCGC 1 cut(s) 418
AcsI RAATTY 4 cut(s) 110, 447, 524, 803
AcyI GRCGYC 1 cut(s) 681
AfaI GTAC 1 cut(s) 598
AfiI CCNNNNNNNGG 4 cut(s) 12, 229, 311, 646
AflIII ACRYGT 1 cut(s) 160
AgeI ACCGGT 1 cut(s) 9
AgsI TTSAA 5 cut(s) 365, 452, 530, 802, 858
AjnI CCWGG 1 cut(s) 639
AluBI AGCT 3 cut(s) 543, 706, 884
AluI AGCT 3 cut(s) 543, 706, 884
Alw21I GWGCWC 1 cut(s) 545
Alw26I GTCTC 3 cut(s) 39, 294, 389
Ama87I CYCGRG 2 cut(s) 42, 739
AoxI GGCC 3 cut(s) 134, 795, 888
ApeKI GCWGC 7 cut(s) 631, 634, 691, 694, 697, 700, 703
ApoI RAATTY 4 cut(s) 110, 447, 524, 803
AseI ATTAAT 1 cut(s) 126
AsiGI ACCGGT 1 cut(s) 9
Asp700I GAANNNNTTC 1 cut(s) 360
AspLEI GCGC 1 cut(s) 639
AsuC2I CCSGG 2 cut(s) 740, 741
AsuHPI GGTGA 1 cut(s) 472
AvaI CYCGRG 2 cut(s) 42, 739
BanI GGYRCC 1 cut(s) 827
BanII GRGCYC 2 cut(s) 252, 545
Bbv12I GWGCWC 1 cut(s) 545
BbvI GCAGC 7 cut(s) 643, 646, 703, 706, 709, 712, 715
BccI CCATC 2 cut(s) 202, 382
BciT130I CCWGG 1 cut(s) 641
BclI TGATCA 1 cut(s) 550
BcnI CCSGG 2 cut(s) 740, 741
BcoDI GTCTC 3 cut(s) 39, 294, 389
BfaI CTAG 1 cut(s) 311
BfoI RGCGCY 1 cut(s) 640
BisI GCNGC 7 cut(s) 632, 635, 692, 695, 698, 701, 704
BlsI GCNGC 7 cut(s) 633, 636, 693, 696, 699, 702, 705
Bme1390I CCNGG 3 cut(s) 641, 740, 741
BmeT110I CYCGRG 2 cut(s) 42, 739
BmiI GGNNCC 1 cut(s) 829
BmrFI CCNGG 3 cut(s) 641, 740, 741
BmsI GCATC 1 cut(s) 740
BpmI CTGGAG 1 cut(s) 206
BpuEI CTTGAG 1 cut(s) 559
BpuMI CCSGG 2 cut(s) 740, 741
BsaBI GATNNNNATC 2 cut(s) 555, 783
BsaHI GRCGYC 1 cut(s) 681
BsaI GGTCTC 1 cut(s) 294
BsaJI CCNNGG 2 cut(s) 738, 739
BsaWI WCCGGW 1 cut(s) 9
BsaXI ACNNNNNCTCC 2 cut(s) 527, 557
Bsc4I CCNNNNNNNGG 4 cut(s) 12, 229, 311, 646
Bse118I RCCGGY 1 cut(s) 9
Bse3DI GCAATG 1 cut(s) 910
Bse8I GATNNNNATC 2 cut(s) 555, 783
BseBI CCWGG 1 cut(s) 641
BseDI CCNNGG 2 cut(s) 738, 739
BseGI GGATG 1 cut(s) 616
BseJI GATNNNNATC 2 cut(s) 555, 783
BseLI CCNNNNNNNGG 4 cut(s) 12, 229, 311, 646
BseMI GCAATG 1 cut(s) 910
BseMII CTCAG 5 cut(s) 390, 447, 680, 746, 906
BseXI GCAGC 7 cut(s) 643, 646, 703, 706, 709, 712, 715
BsgI GTGCAG 1 cut(s) 753
BshFI GGCC 3 cut(s) 136, 797, 890
BshNI GGYRCC 1 cut(s) 827
BshTI ACCGGT 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 545
BsiHKCI CYCGRG 2 cut(s) 42, 739
BsiSI CCGG 2 cut(s) 10, 740
BslI CCNNNNNNNGG 4 cut(s) 12, 229, 311, 646
BsmAI GTCTC 3 cut(s) 39, 294, 389
BsnI GGCC 3 cut(s) 136, 797, 890
Bso31I GGTCTC 1 cut(s) 294
BsoBI CYCGRG 2 cut(s) 42, 739
Bsp1286I GDGCHC 2 cut(s) 252, 545
Bsp143I GATC 5 cut(s) 151, 550, 613, 778, 784
BspACI CCGC 1 cut(s) 418
BspANI GGCC 3 cut(s) 136, 797, 890
BspCNI CTCAG 5 cut(s) 391, 448, 679, 747, 905
BspLI GGNNCC 1 cut(s) 829
BspT107I GGYRCC 1 cut(s) 827
BspTNI GGTCTC 1 cut(s) 294
BsrDI GCAATG 1 cut(s) 910
BsrFI RCCGGY 1 cut(s) 9
BssAI RCCGGY 1 cut(s) 9
BssECI CCNNGG 2 cut(s) 738, 739
BssMI GATC 5 cut(s) 151, 550, 613, 778, 784
BssNI GRCGYC 1 cut(s) 681
Bst2UI CCWGG 1 cut(s) 641
Bst4CI ACNGT 2 cut(s) 189, 488
Bst6I CTCTTC 1 cut(s) 387
BstACI GRCGYC 1 cut(s) 681
BstAPI GCANNNNNTGC 1 cut(s) 662
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 6 cut(s) 399, 456, 666, 755, 834, 892
BstF5I GGATG 1 cut(s) 616
BstH2I RGCGCY 1 cut(s) 640
BstHHI GCGC 1 cut(s) 639
BstKTI GATC 5 cut(s) 154, 553, 616, 781, 787
BstMAI GTCTC 3 cut(s) 39, 294, 389
BstMBI GATC 5 cut(s) 151, 550, 613, 778, 784
BstMWI GCNNNNNNNGC 5 cut(s) 662, 697, 700, 703, 881
BstNI CCWGG 1 cut(s) 641
BstNSI RCATGY 2 cut(s) 164, 410
BstSCI CCNGG 3 cut(s) 639, 738, 739
BstV1I GCAGC 7 cut(s) 643, 646, 703, 706, 709, 712, 715
BsuRI GGCC 3 cut(s) 136, 797, 890
BtsCI GGATG 1 cut(s) 616
Cac8I GCNNGC 1 cut(s) 72
CfoI GCGC 1 cut(s) 639
Cfr10I RCCGGY 1 cut(s) 9
Cfr9I CCCGGG 1 cut(s) 739
CseI GACGC 2 cut(s) 162, 689
Csp6I GTAC 1 cut(s) 597
CspAI ACCGGT 1 cut(s) 9
CviAII CATG 4 cut(s) 59, 161, 407, 593
CviQI GTAC 1 cut(s) 597
DdeI CTNAG 6 cut(s) 399, 456, 666, 755, 834, 892
DpnI GATC 5 cut(s) 153, 552, 615, 780, 786
DpnII GATC 5 cut(s) 151, 550, 613, 778, 784
DraI TTTAAA 1 cut(s) 574
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
Ecl136II GAGCTC 1 cut(s) 543
Eco147I AGGCCT 1 cut(s) 797
Eco24I GRGCYC 2 cut(s) 252, 545
Eco31I GGTCTC 1 cut(s) 294
Eco53kI GAGCTC 1 cut(s) 543
Eco88I CYCGRG 2 cut(s) 42, 739
EcoICRI GAGCTC 1 cut(s) 543
EcoRII CCWGG 1 cut(s) 639
EcoT22I ATGCAT 1 cut(s) 594
EcoT38I GRGCYC 2 cut(s) 252, 545
FaeI CATG 4 cut(s) 62, 164, 410, 596
FaiI YATR 8 cut(s) 18, 60, 76, 162, 408, 549, 555, 594
FatI CATG 4 cut(s) 58, 160, 406, 592
FauI CCCGC 1 cut(s) 411
FbaI TGATCA 1 cut(s) 550
Fnu4HI GCNGC 7 cut(s) 632, 635, 692, 695, 698, 701, 704
FokI GGATG 1 cut(s) 623
FriOI GRGCYC 2 cut(s) 252, 545
Fsp4HI GCNGC 7 cut(s) 632, 635, 692, 695, 698, 701, 704
FspBI CTAG 1 cut(s) 311
GlaI GCGC 1 cut(s) 638
GluI GCNGC 7 cut(s) 632, 635, 692, 695, 698, 701, 704
GsuI CTGGAG 1 cut(s) 206
HaeII RGCGCY 1 cut(s) 640
HaeIII GGCC 3 cut(s) 136, 797, 890
HapII CCGG 2 cut(s) 10, 740
HgaI GACGC 2 cut(s) 162, 689
HhaI GCGC 1 cut(s) 639
Hin1I GRCGYC 1 cut(s) 681
Hin1II CATG 4 cut(s) 62, 164, 410, 596
Hin6I GCGC 1 cut(s) 637
HinP1I GCGC 1 cut(s) 637
HinfI GANTC 2 cut(s) 83, 725
HpaII CCGG 2 cut(s) 10, 740
HphI GGTGA 1 cut(s) 472
Hpy188I TCNGA 1 cut(s) 669
Hpy188III TCNNGA 6 cut(s) 80, 92, 155, 223, 608, 782
Hpy99I CGWCG 1 cut(s) 683
HpyAV CCTTC 5 cut(s) 58, 232, 238, 524, 787
HpyCH4III ACNGT 2 cut(s) 189, 488
HpyCH4IV ACGT 1 cut(s) 436
HpyCH4V TGCA 7 cut(s) 104, 410, 498, 592, 731, 770, 776
HpyF10VI GCNNNNNNNGC 5 cut(s) 662, 697, 700, 703, 881
HpyF3I CTNAG 6 cut(s) 399, 456, 666, 755, 834, 892
HpySE526I ACGT 1 cut(s) 436
Hsp92I GRCGYC 1 cut(s) 681
Hsp92II CATG 4 cut(s) 62, 164, 410, 596
HspAI GCGC 1 cut(s) 637
Ksp22I TGATCA 1 cut(s) 550
Kzo9I GATC 5 cut(s) 151, 550, 613, 778, 784
LmnI GCTCC 3 cut(s) 67, 548, 628
Lsp1109I GCAGC 7 cut(s) 643, 646, 703, 706, 709, 712, 715
LweI GCATC 1 cut(s) 740
MaeI CTAG 1 cut(s) 311
MaeII ACGT 1 cut(s) 436
MaeIII GTNAC 4 cut(s) 84, 189, 488, 533
MalI GATC 5 cut(s) 153, 552, 615, 780, 786
MboI GATC 5 cut(s) 151, 550, 613, 778, 784
MboII GAAGA 7 cut(s) 341, 344, 365, 381, 404, 734, 807
MhlI GDGCHC 2 cut(s) 252, 545
MluCI AATT 6 cut(s) 110, 270, 447, 512, 524, 803
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 2 cut(s) 30, 298
MnlI CCTC 8 cut(s) 100, 394, 415, 451, 639, 841, 850, 901
Mph1103I ATGCAT 1 cut(s) 594
MroXI GAANNNNTTC 1 cut(s) 360
MseI TTAA 2 cut(s) 126, 573
MspI CCGG 2 cut(s) 10, 740
MspR9I CCNGG 3 cut(s) 641, 740, 741
MvaI CCWGG 1 cut(s) 641
MwoI GCNNNNNNNGC 5 cut(s) 662, 697, 700, 703, 881
NciI CCSGG 2 cut(s) 740, 741
NdeII GATC 5 cut(s) 151, 550, 613, 778, 784
NlaIII CATG 4 cut(s) 62, 164, 410, 596
NlaIV GGNNCC 1 cut(s) 829
NmuCI GTSAC 3 cut(s) 84, 488, 533
NsiI ATGCAT 1 cut(s) 594
NspI RCATGY 2 cut(s) 164, 410
PceI AGGCCT 1 cut(s) 797
PciI ACATGT 1 cut(s) 160
PcsI WCGNNNNNNNCGW 1 cut(s) 613
PdmI GAANNNNTTC 1 cut(s) 360
PfeI GAWTC 1 cut(s) 725
PflMI CCANNNNNTGG 2 cut(s) 12, 229
PinAI ACCGGT 1 cut(s) 9
PkrI GCNGC 7 cut(s) 633, 636, 693, 696, 699, 702, 705
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
PscI ACATGT 1 cut(s) 160
PshBI ATTAAT 1 cut(s) 126
Psp124BI GAGCTC 1 cut(s) 545
Psp6I CCWGG 1 cut(s) 639
PspGI CCWGG 1 cut(s) 639
PspN4I GGNNCC 1 cut(s) 829
RsaI GTAC 1 cut(s) 598
RsaNI GTAC 1 cut(s) 597
SacI GAGCTC 1 cut(s) 545
SaqAI TTAA 2 cut(s) 126, 573
SatI GCNGC 7 cut(s) 632, 635, 692, 695, 698, 701, 704
Sau3AI GATC 5 cut(s) 151, 550, 613, 778, 784
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 3 cut(s) 641, 740, 741
SduI GDGCHC 2 cut(s) 252, 545
SfaNI GCATC 1 cut(s) 740
SmaI CCCGGG 1 cut(s) 741
SmlI CTYRAG 1 cut(s) 538
SmoI CTYRAG 1 cut(s) 538
Sse9I AATT 6 cut(s) 110, 270, 447, 512, 524, 803
SseBI AGGCCT 1 cut(s) 797
SsiI CCGC 1 cut(s) 418
SspI AATATT 1 cut(s) 361
SspMI CTAG 1 cut(s) 311
SstI GAGCTC 1 cut(s) 545
StuI AGGCCT 1 cut(s) 797
StyD4I CCNGG 3 cut(s) 639, 738, 739
TaaI ACNGT 2 cut(s) 189, 488
TaiI ACGT 1 cut(s) 439
TasI AATT 6 cut(s) 110, 270, 447, 512, 524, 803
TfiI GAWTC 1 cut(s) 725
Tru1I TTAA 2 cut(s) 126, 573
Tru9I TTAA 2 cut(s) 126, 573
TseFI GTSAC 3 cut(s) 84, 488, 533
TseI GCWGC 7 cut(s) 631, 634, 691, 694, 697, 700, 703
Tsp45I GTSAC 3 cut(s) 84, 488, 533
TspDTI ATGAA 2 cut(s) 276, 596
TspMI CCCGGG 1 cut(s) 739
Van91I CCANNNNNTGG 2 cut(s) 12, 229
VspI ATTAAT 1 cut(s) 126
XapI RAATTY 4 cut(s) 110, 447, 524, 803
XceI RCATGY 2 cut(s) 164, 410
XmaI CCCGGG 1 cut(s) 739
XmnI GAANNNNTTC 1 cut(s) 360
XspI CTAG 1 cut(s) 311
Zsp2I ATGCAT 1 cut(s) 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.