Rroxscaffold_6G00420980

G patch domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0010106
Physical Location & Seq
Forward (+)
42183535 .. 42187072
3538 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00420980.1

Sequence Viewer

Length: 939 bp
ATGCATTTTAGGCAAGACATGTCCAACCGGTGGTATAACAGTAGACAGGAAACAAGCACCCGAGACAAACAGCAACATGAGAAGGAGCAGGCATATCAGGAGTCACTTCTTGATGATTTTGCAGAGGAATTTAGACTTCCTATTAATCAAAGGCCAACAGAAAATGTTGATCTGGAACATGTGGAACAAGCGTCATTGGACAGACAGTTACCATCATCTAACATTGGTTTTCGGCTTCTCCAGAAAATGGGGTGGAAGGGGAAGGGGCTCGGTAAAGATGAACAAGGAATTGTTGAGCCAATAAAATCTGGGATCAGAGACCCAAAACTAGGAGTTGGAAAACAAGAAGAAGATGATTATTTTACAGCAGAAGAAAATATTCAAAGAAGAAAACTTGATGTTGAGATGGAAGAGACTGAGGAACATGCAAAGAAGCGGGAGGTTTTAGCAGAACGTGAGCAGAAAATTCAAACTGAGGTGAAAGAAATACGCAAGGTGTTCTACTGTGACCTGTGCAACAAACAATACAAATTGGCTGTGGAATTTGAAGCTCACTTGAGCTCGTATGATCATAATCACAGGAAGCGTTTTAAAGAAATGAAAGAAATGCATGGTACAAGTAGTCGGGATGATCGTCAAAAACGGGAGCAGCAGCGCCAGGAAAGGGAAATGGCAAAGTTTGCTCAGATGAGTGCCGATGCCCGTAAGCAGCAGCAGCAGCTACAACAACAGCAAGAAGAATCTGCATCAGCCCCGGGTTCTGCTGAACTGAGAAGTGCTACTGCACTTGCAGATCAAGATCAAAGGAAGGCCTTGAAATTTGGGTTTTCTTCTAAAGGTGGCACCTCTAAGACCTCGTTTGGTAGTGCTTCAAAGAAGCCAAAAGTAGCAAAAGTAGCTGTGGCCTCAGTATTTGGCAATGATAGTGATGAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch zf-C2H2_jaz

Protein Analysis

312

Amino Acids

36.19

Weight (kDa)

6.5

Isoelectric Point (pI)

63.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch PF01585 73 - 113 4.9e-16 G-patch domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 842
AccB7I CCANNNNNTGG 2 cut(s) 30, 247
AccI GTMKAC 1 cut(s) 43
AciI CCGC 1 cut(s) 436
AclWI GGATC 1 cut(s) 320
AcsI RAATTY 4 cut(s) 128, 465, 542, 818
AfaI GTAC 1 cut(s) 616
AfiI CCNNNNNNNGG 4 cut(s) 30, 247, 329, 664
AflIII ACRYGT 2 cut(s) 18, 178
AgeI ACCGGT 1 cut(s) 27
AgsI TTSAA 5 cut(s) 383, 470, 548, 817, 873
AjnI CCWGG 1 cut(s) 657
AluBI AGCT 4 cut(s) 551, 561, 721, 899
AluI AGCT 4 cut(s) 551, 561, 721, 899
Alw21I GWGCWC 1 cut(s) 563
Alw26I GTCTC 3 cut(s) 57, 312, 407
AlwI GGATC 1 cut(s) 320
Ama87I CYCGRG 2 cut(s) 60, 754
AoxI GGCC 3 cut(s) 152, 810, 903
ApeKI GCWGC 6 cut(s) 649, 652, 709, 712, 715, 718
ApoI RAATTY 4 cut(s) 128, 465, 542, 818
AseI ATTAAT 1 cut(s) 144
AsiGI ACCGGT 1 cut(s) 27
Asp700I GAANNNNTTC 1 cut(s) 378
AspLEI GCGC 1 cut(s) 657
AsuC2I CCSGG 2 cut(s) 755, 756
AsuHPI GGTGA 1 cut(s) 490
AvaI CYCGRG 2 cut(s) 60, 754
BanI GGYRCC 1 cut(s) 842
BanII GRGCYC 2 cut(s) 270, 563
Bbv12I GWGCWC 1 cut(s) 563
BbvI GCAGC 6 cut(s) 661, 664, 721, 724, 727, 730
BccI CCATC 2 cut(s) 220, 400
BciT130I CCWGG 1 cut(s) 659
BclI TGATCA 1 cut(s) 568
BcnI CCSGG 2 cut(s) 755, 756
BcoDI GTCTC 3 cut(s) 57, 312, 407
BfaI CTAG 1 cut(s) 329
BfoI RGCGCY 1 cut(s) 658
BisI GCNGC 6 cut(s) 650, 653, 710, 713, 716, 719
BlsI GCNGC 6 cut(s) 651, 654, 711, 714, 717, 720
Bme1390I CCNGG 3 cut(s) 659, 755, 756
BmeT110I CYCGRG 2 cut(s) 60, 754
BmiI GGNNCC 1 cut(s) 844
BmrFI CCNGG 3 cut(s) 659, 755, 756
BmsI GCATC 2 cut(s) 688, 755
BpmI CTGGAG 1 cut(s) 224
BpuEI CTTGAG 1 cut(s) 577
BpuMI CCSGG 2 cut(s) 755, 756
BsaBI GATNNNNATC 2 cut(s) 573, 798
BsaI GGTCTC 1 cut(s) 312
BsaJI CCNNGG 2 cut(s) 753, 754
BsaWI WCCGGW 1 cut(s) 27
Bsc4I CCNNNNNNNGG 4 cut(s) 30, 247, 329, 664
Bse118I RCCGGY 1 cut(s) 27
Bse3DI GCAATG 1 cut(s) 925
Bse8I GATNNNNATC 2 cut(s) 573, 798
BseBI CCWGG 1 cut(s) 659
BseDI CCNNGG 2 cut(s) 753, 754
BseGI GGATG 1 cut(s) 634
BseJI GATNNNNATC 2 cut(s) 573, 798
BseLI CCNNNNNNNGG 4 cut(s) 30, 247, 329, 664
BseMI GCAATG 1 cut(s) 925
BseMII CTCAG 5 cut(s) 408, 465, 698, 761, 921
BseXI GCAGC 6 cut(s) 661, 664, 721, 724, 727, 730
BsgI GTGCAG 1 cut(s) 768
BshFI GGCC 3 cut(s) 154, 812, 905
BshNI GGYRCC 1 cut(s) 842
BshTI ACCGGT 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 563
BsiHKCI CYCGRG 2 cut(s) 60, 754
BsiSI CCGG 2 cut(s) 28, 755
BslI CCNNNNNNNGG 4 cut(s) 30, 247, 329, 664
BsmAI GTCTC 3 cut(s) 57, 312, 407
BsnI GGCC 3 cut(s) 154, 812, 905
Bso31I GGTCTC 1 cut(s) 312
BsoBI CYCGRG 2 cut(s) 60, 754
Bsp1286I GDGCHC 2 cut(s) 270, 563
Bsp143I GATC 6 cut(s) 169, 312, 568, 631, 793, 799
BspACI CCGC 1 cut(s) 436
BspANI GGCC 3 cut(s) 154, 812, 905
BspCNI CTCAG 5 cut(s) 409, 466, 697, 762, 920
BspLI GGNNCC 1 cut(s) 844
BspPI GGATC 1 cut(s) 320
BspT107I GGYRCC 1 cut(s) 842
BspTNI GGTCTC 1 cut(s) 312
BsrDI GCAATG 1 cut(s) 925
BsrFI RCCGGY 1 cut(s) 27
BssAI RCCGGY 1 cut(s) 27
BssECI CCNNGG 2 cut(s) 753, 754
BssMI GATC 6 cut(s) 169, 312, 568, 631, 793, 799
Bst2UI CCWGG 1 cut(s) 659
Bst4CI ACNGT 3 cut(s) 41, 207, 506
Bst6I CTCTTC 1 cut(s) 405
BstAPI GCANNNNNTGC 1 cut(s) 680
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 6 cut(s) 417, 474, 684, 770, 849, 907
BstF5I GGATG 1 cut(s) 634
BstH2I RGCGCY 1 cut(s) 658
BstHHI GCGC 1 cut(s) 657
BstKTI GATC 6 cut(s) 172, 315, 571, 634, 796, 802
BstMAI GTCTC 3 cut(s) 57, 312, 407
BstMBI GATC 6 cut(s) 169, 312, 568, 631, 793, 799
BstMWI GCNNNNNNNGC 5 cut(s) 10, 680, 715, 718, 896
BstNI CCWGG 1 cut(s) 659
BstNSI RCATGY 3 cut(s) 22, 182, 428
BstSCI CCNGG 3 cut(s) 657, 753, 754
BstV1I GCAGC 6 cut(s) 661, 664, 721, 724, 727, 730
BsuRI GGCC 3 cut(s) 154, 812, 905
BtsCI GGATG 1 cut(s) 634
Cac8I GCNNGC 1 cut(s) 90
CfoI GCGC 1 cut(s) 657
Cfr10I RCCGGY 1 cut(s) 27
Cfr9I CCCGGG 1 cut(s) 754
CseI GACGC 1 cut(s) 180
Csp6I GTAC 1 cut(s) 615
CspAI ACCGGT 1 cut(s) 27
CviAII CATG 5 cut(s) 19, 77, 179, 425, 611
CviQI GTAC 1 cut(s) 615
DdeI CTNAG 6 cut(s) 417, 474, 684, 770, 849, 907
DpnI GATC 6 cut(s) 171, 314, 570, 633, 795, 801
DpnII GATC 6 cut(s) 169, 312, 568, 631, 793, 799
DraI TTTAAA 1 cut(s) 592
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Ecl136II GAGCTC 1 cut(s) 561
Eco147I AGGCCT 1 cut(s) 812
Eco24I GRGCYC 2 cut(s) 270, 563
Eco31I GGTCTC 1 cut(s) 312
Eco53kI GAGCTC 1 cut(s) 561
Eco88I CYCGRG 2 cut(s) 60, 754
EcoICRI GAGCTC 1 cut(s) 561
EcoRII CCWGG 1 cut(s) 657
EcoT22I ATGCAT 2 cut(s) 6, 612
EcoT38I GRGCYC 2 cut(s) 270, 563
FaeI CATG 5 cut(s) 22, 80, 182, 428, 614
FaiI YATR 9 cut(s) 20, 36, 78, 94, 180, 426, 567, 573, 612
FatI CATG 5 cut(s) 18, 76, 178, 424, 610
FauI CCCGC 1 cut(s) 429
FbaI TGATCA 1 cut(s) 568
FblI GTMKAC 1 cut(s) 43
Fnu4HI GCNGC 6 cut(s) 650, 653, 710, 713, 716, 719
FokI GGATG 1 cut(s) 641
FriOI GRGCYC 2 cut(s) 270, 563
Fsp4HI GCNGC 6 cut(s) 650, 653, 710, 713, 716, 719
FspBI CTAG 1 cut(s) 329
GlaI GCGC 1 cut(s) 656
GluI GCNGC 6 cut(s) 650, 653, 710, 713, 716, 719
GsuI CTGGAG 1 cut(s) 224
HaeII RGCGCY 1 cut(s) 658
HaeIII GGCC 3 cut(s) 154, 812, 905
HapII CCGG 2 cut(s) 28, 755
HgaI GACGC 1 cut(s) 180
HhaI GCGC 1 cut(s) 657
Hin1II CATG 5 cut(s) 22, 80, 182, 428, 614
Hin6I GCGC 1 cut(s) 655
HinP1I GCGC 1 cut(s) 655
HinfI GANTC 2 cut(s) 101, 740
HpaII CCGG 2 cut(s) 28, 755
HphI GGTGA 1 cut(s) 490
Hpy166II GTNNAC 1 cut(s) 44
Hpy188I TCNGA 2 cut(s) 317, 687
Hpy188III TCNNGA 6 cut(s) 98, 110, 173, 241, 626, 797
Hpy8I GTNNAC 1 cut(s) 44
HpyAV CCTTC 4 cut(s) 76, 250, 256, 802
HpyCH4III ACNGT 3 cut(s) 41, 207, 506
HpyCH4IV ACGT 1 cut(s) 454
HpyCH4V TGCA 8 cut(s) 4, 122, 428, 516, 610, 746, 785, 791
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 680, 715, 718, 896
HpyF3I CTNAG 6 cut(s) 417, 474, 684, 770, 849, 907
HpySE526I ACGT 1 cut(s) 454
Hsp92II CATG 5 cut(s) 22, 80, 182, 428, 614
HspAI GCGC 1 cut(s) 655
Ksp22I TGATCA 1 cut(s) 568
Kzo9I GATC 6 cut(s) 169, 312, 568, 631, 793, 799
LmnI GCTCC 2 cut(s) 85, 646
Lsp1109I GCAGC 6 cut(s) 661, 664, 721, 724, 727, 730
LweI GCATC 2 cut(s) 688, 755
MaeI CTAG 1 cut(s) 329
MaeII ACGT 1 cut(s) 454
MaeIII GTNAC 3 cut(s) 102, 207, 506
MalI GATC 6 cut(s) 171, 314, 570, 633, 795, 801
MboI GATC 6 cut(s) 169, 312, 568, 631, 793, 799
MboII GAAGA 7 cut(s) 359, 362, 383, 399, 422, 749, 822
MhlI GDGCHC 2 cut(s) 270, 563
MluCI AATT 6 cut(s) 128, 288, 465, 530, 542, 818
MlyI GAGTC 1 cut(s) 110
MmeI TCCRAC 2 cut(s) 48, 316
MnlI CCTC 7 cut(s) 118, 412, 433, 469, 856, 865, 916
Mph1103I ATGCAT 2 cut(s) 6, 612
MroXI GAANNNNTTC 1 cut(s) 378
MseI TTAA 2 cut(s) 144, 591
MspI CCGG 2 cut(s) 28, 755
MspR9I CCNGG 3 cut(s) 659, 755, 756
MvaI CCWGG 1 cut(s) 659
MwoI GCNNNNNNNGC 5 cut(s) 10, 680, 715, 718, 896
NciI CCSGG 2 cut(s) 755, 756
NdeII GATC 6 cut(s) 169, 312, 568, 631, 793, 799
NlaIII CATG 5 cut(s) 22, 80, 182, 428, 614
NlaIV GGNNCC 1 cut(s) 844
NmuCI GTSAC 2 cut(s) 102, 506
NsiI ATGCAT 2 cut(s) 6, 612
NspI RCATGY 3 cut(s) 22, 182, 428
PceI AGGCCT 1 cut(s) 812
PciI ACATGT 2 cut(s) 18, 178
PcsI WCGNNNNNNNCGW 1 cut(s) 631
PdmI GAANNNNTTC 1 cut(s) 378
PfeI GAWTC 1 cut(s) 740
PflMI CCANNNNNTGG 2 cut(s) 30, 247
PinAI ACCGGT 1 cut(s) 27
PkrI GCNGC 6 cut(s) 651, 654, 711, 714, 717, 720
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PscI ACATGT 2 cut(s) 18, 178
PshBI ATTAAT 1 cut(s) 144
Psp124BI GAGCTC 1 cut(s) 563
Psp6I CCWGG 1 cut(s) 657
PspGI CCWGG 1 cut(s) 657
PspN4I GGNNCC 1 cut(s) 844
RsaI GTAC 1 cut(s) 616
RsaNI GTAC 1 cut(s) 615
SacI GAGCTC 1 cut(s) 563
SaqAI TTAA 2 cut(s) 144, 591
SatI GCNGC 6 cut(s) 650, 653, 710, 713, 716, 719
Sau3AI GATC 6 cut(s) 169, 312, 568, 631, 793, 799
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 3 cut(s) 659, 755, 756
SduI GDGCHC 2 cut(s) 270, 563
SfaNI GCATC 2 cut(s) 688, 755
SmaI CCCGGG 1 cut(s) 756
SmlI CTYRAG 1 cut(s) 556
SmoI CTYRAG 1 cut(s) 556
Sse9I AATT 6 cut(s) 128, 288, 465, 530, 542, 818
SseBI AGGCCT 1 cut(s) 812
SsiI CCGC 1 cut(s) 436
SspI AATATT 1 cut(s) 379
SspMI CTAG 1 cut(s) 329
SstI GAGCTC 1 cut(s) 563
StuI AGGCCT 1 cut(s) 812
StyD4I CCNGG 3 cut(s) 657, 753, 754
TaaI ACNGT 3 cut(s) 41, 207, 506
TaiI ACGT 1 cut(s) 457
TasI AATT 6 cut(s) 128, 288, 465, 530, 542, 818
TfiI GAWTC 1 cut(s) 740
Tru1I TTAA 2 cut(s) 144, 591
Tru9I TTAA 2 cut(s) 144, 591
TseFI GTSAC 2 cut(s) 102, 506
TseI GCWGC 6 cut(s) 649, 652, 709, 712, 715, 718
Tsp45I GTSAC 2 cut(s) 102, 506
TspDTI ATGAA 2 cut(s) 294, 614
TspMI CCCGGG 1 cut(s) 754
Van91I CCANNNNNTGG 2 cut(s) 30, 247
VspI ATTAAT 1 cut(s) 144
XapI RAATTY 4 cut(s) 128, 465, 542, 818
XceI RCATGY 3 cut(s) 22, 182, 428
XmaI CCCGGG 1 cut(s) 754
XmiI GTMKAC 1 cut(s) 43
XmnI GAANNNNTTC 1 cut(s) 378
XspI CTAG 1 cut(s) 329
Zsp2I ATGCAT 2 cut(s) 6, 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.