Rh3DG092000

G patch domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0010106
Physical Location & Seq
Reverse (-)
7102362 .. 7105693
3332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG092000.1

Sequence Viewer

Length: 975 bp
ATGAAGGTAGCTGGGCTTGAGCCCACTCACAAATTCAACTCCACCAGGCAAGACATGTCCAACCGGTGGTATAACAATAGACAGGAAACAAGCACCCGAGACAAACAGCAACATGGGAAGGAGCAGGCATATCAGGAGTCACTTCTTGATGATTTTGCAGAGGAATTTAGACTTCCTATTAATCAAAGGCCAACAGAAAATGTTGATCTGGAACATGTGGAACAAGCGTCATTGGACAGACAGTTACCATCATCTAACATTGGTTTTCGGCTTCTCCAGAAAATGGGGTGGAAGGGGAAGGGGCTCGGTAAAGATGAACAAGGAATTGTTGAGCCAATAAAATCTGGGATTAGAGACCCAAAACTAGGAGTTGGAAAACAAGAAGAAGATGATTATTTTACAGCAGAAGAAAATATTCAAAGAAGAAAACTTGATGTTGAGATGGAAGAGACTGAGGAACATGCAAAGAAGCGGGAGGTTTTAGCAGAACGTGAGCAGAAGATTCAAACTGAGGTGAAAGAAATACGCAAGGTGTTCTACTGTGACCTGTGCAACAAACAATACAAATTGGCTGTGGAATTTGAAGCTCACTTGAGCTCCTATGATCATAATCACAGGAAGCGTTTTAAAGAAATGAAAGAAATGCATGGTACAAGTAGTCGGGATGATCGTCAAAAACGGGAGCAGCAGCGCCAGGAGAGGGAAATGGCAAAGTTTGCTCAGATGAGTGCCGACGCCCGTAAGCAGCAGCAGCAGCTACAACAACAGCAAGAAGAATCTGCATCAGCCCCGGGTTCTGCTGAACTGAGAAGTGCTACTGCACTTGCAGATCAAGATCAAAGGAAGGCCTTGAAATTTGGGTTTTCTTCTAAAGGTGGCACCTCTAAGACCTCGTTTGGTAGTGCTTCAAAGAAGCCAAAAGTAGCAAAAGTAGCAGTGGCCTCAGTATTTGGCAATGATAGTGATGAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch zf-C2H2_jaz

Protein Analysis

324

Amino Acids

37.38

Weight (kDa)

7.12

Isoelectric Point (pI)

60.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch PF01585 85 - 125 5.2e-16 G-patch domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 878
AccB7I CCANNNNNTGG 2 cut(s) 66, 283
AciI CCGC 1 cut(s) 472
AcsI RAATTY 4 cut(s) 32, 164, 578, 854
AcyI GRCGYC 1 cut(s) 735
AfaI GTAC 1 cut(s) 652
AfiI CCNNNNNNNGG 4 cut(s) 66, 283, 365, 700
AflIII ACRYGT 2 cut(s) 54, 214
AgeI ACCGGT 1 cut(s) 63
AgsI TTSAA 6 cut(s) 37, 419, 506, 584, 853, 909
AjnI CCWGG 2 cut(s) 44, 693
AluBI AGCT 4 cut(s) 11, 587, 597, 757
AluI AGCT 4 cut(s) 11, 587, 597, 757
Alw21I GWGCWC 1 cut(s) 599
Alw26I GTCTC 3 cut(s) 93, 348, 443
Ama87I CYCGRG 2 cut(s) 96, 790
AoxI GGCC 3 cut(s) 188, 846, 939
ApeKI GCWGC 6 cut(s) 685, 688, 745, 748, 751, 754
ApoI RAATTY 4 cut(s) 32, 164, 578, 854
AseI ATTAAT 1 cut(s) 180
AsiGI ACCGGT 1 cut(s) 63
Asp700I GAANNNNTTC 1 cut(s) 414
AspLEI GCGC 1 cut(s) 693
AsuC2I CCSGG 2 cut(s) 791, 792
AsuHPI GGTGA 1 cut(s) 526
AvaI CYCGRG 2 cut(s) 96, 790
BanI GGYRCC 1 cut(s) 878
BanII GRGCYC 3 cut(s) 24, 306, 599
Bbv12I GWGCWC 1 cut(s) 599
BbvI GCAGC 6 cut(s) 697, 700, 757, 760, 763, 766
BccI CCATC 2 cut(s) 256, 436
BciT130I CCWGG 2 cut(s) 46, 695
BclI TGATCA 1 cut(s) 604
BcnI CCSGG 2 cut(s) 791, 792
BcoDI GTCTC 3 cut(s) 93, 348, 443
BfaI CTAG 1 cut(s) 365
BfoI RGCGCY 1 cut(s) 694
BisI GCNGC 6 cut(s) 686, 689, 746, 749, 752, 755
BlsI GCNGC 6 cut(s) 687, 690, 747, 750, 753, 756
Bme1390I CCNGG 4 cut(s) 46, 695, 791, 792
BmeT110I CYCGRG 2 cut(s) 96, 790
BmiI GGNNCC 1 cut(s) 880
BmrFI CCNGG 4 cut(s) 46, 695, 791, 792
BmsI GCATC 1 cut(s) 791
BpmI CTGGAG 1 cut(s) 260
BpuEI CTTGAG 2 cut(s) 38, 613
BpuMI CCSGG 2 cut(s) 791, 792
BsaBI GATNNNNATC 2 cut(s) 609, 834
BsaHI GRCGYC 1 cut(s) 735
BsaI GGTCTC 1 cut(s) 348
BsaJI CCNNGG 2 cut(s) 789, 790
BsaWI WCCGGW 1 cut(s) 63
BsaXI ACNNNNNCTCC 2 cut(s) 581, 611
Bsc4I CCNNNNNNNGG 4 cut(s) 66, 283, 365, 700
Bse118I RCCGGY 1 cut(s) 63
Bse3DI GCAATG 1 cut(s) 961
Bse8I GATNNNNATC 2 cut(s) 609, 834
BseBI CCWGG 2 cut(s) 46, 695
BseDI CCNNGG 2 cut(s) 789, 790
BseGI GGATG 1 cut(s) 670
BseJI GATNNNNATC 2 cut(s) 609, 834
BseLI CCNNNNNNNGG 4 cut(s) 66, 283, 365, 700
BseMI GCAATG 1 cut(s) 961
BseMII CTCAG 5 cut(s) 444, 501, 734, 797, 957
BseXI GCAGC 6 cut(s) 697, 700, 757, 760, 763, 766
BseYI CCCAGC 1 cut(s) 11
BsgI GTGCAG 1 cut(s) 804
BshFI GGCC 3 cut(s) 190, 848, 941
BshNI GGYRCC 1 cut(s) 878
BshTI ACCGGT 1 cut(s) 63
BsiHKAI GWGCWC 1 cut(s) 599
BsiHKCI CYCGRG 2 cut(s) 96, 790
BsiSI CCGG 2 cut(s) 64, 791
BslI CCNNNNNNNGG 4 cut(s) 66, 283, 365, 700
BsmAI GTCTC 3 cut(s) 93, 348, 443
BsnI GGCC 3 cut(s) 190, 848, 941
Bso31I GGTCTC 1 cut(s) 348
BsoBI CYCGRG 2 cut(s) 96, 790
Bsp1286I GDGCHC 3 cut(s) 24, 306, 599
Bsp143I GATC 5 cut(s) 205, 604, 667, 829, 835
BspACI CCGC 1 cut(s) 472
BspANI GGCC 3 cut(s) 190, 848, 941
BspCNI CTCAG 5 cut(s) 445, 502, 733, 798, 956
BspLI GGNNCC 1 cut(s) 880
BspT107I GGYRCC 1 cut(s) 878
BspTNI GGTCTC 1 cut(s) 348
BsrDI GCAATG 1 cut(s) 961
BsrFI RCCGGY 1 cut(s) 63
BssAI RCCGGY 1 cut(s) 63
BssECI CCNNGG 2 cut(s) 789, 790
BssMI GATC 5 cut(s) 205, 604, 667, 829, 835
BssNI GRCGYC 1 cut(s) 735
Bst2UI CCWGG 2 cut(s) 46, 695
Bst4CI ACNGT 2 cut(s) 243, 542
Bst6I CTCTTC 1 cut(s) 441
BstACI GRCGYC 1 cut(s) 735
BstAPI GCANNNNNTGC 1 cut(s) 716
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 6 cut(s) 453, 510, 720, 806, 885, 943
BstF5I GGATG 1 cut(s) 670
BstH2I RGCGCY 1 cut(s) 694
BstHHI GCGC 1 cut(s) 693
BstKTI GATC 5 cut(s) 208, 607, 670, 832, 838
BstMAI GTCTC 3 cut(s) 93, 348, 443
BstMBI GATC 5 cut(s) 205, 604, 667, 829, 835
BstMWI GCNNNNNNNGC 4 cut(s) 716, 751, 754, 932
BstNI CCWGG 2 cut(s) 46, 695
BstNSI RCATGY 3 cut(s) 58, 218, 464
BstSCI CCNGG 4 cut(s) 44, 693, 789, 790
BstV1I GCAGC 6 cut(s) 697, 700, 757, 760, 763, 766
BsuRI GGCC 3 cut(s) 190, 848, 941
BtsCI GGATG 1 cut(s) 670
BtsI GCAGTG 1 cut(s) 942
BtsIMutI CAGTG 1 cut(s) 942
Cac8I GCNNGC 1 cut(s) 126
CfoI GCGC 1 cut(s) 693
Cfr10I RCCGGY 1 cut(s) 63
Cfr9I CCCGGG 1 cut(s) 790
CseI GACGC 2 cut(s) 216, 743
Csp6I GTAC 1 cut(s) 651
CspAI ACCGGT 1 cut(s) 63
CviAII CATG 5 cut(s) 55, 113, 215, 461, 647
CviQI GTAC 1 cut(s) 651
DdeI CTNAG 6 cut(s) 453, 510, 720, 806, 885, 943
DpnI GATC 5 cut(s) 207, 606, 669, 831, 837
DpnII GATC 5 cut(s) 205, 604, 667, 829, 835
DraI TTTAAA 1 cut(s) 628
Eam1104I CTCTTC 1 cut(s) 441
EarI CTCTTC 1 cut(s) 441
Ecl136II GAGCTC 1 cut(s) 597
Eco147I AGGCCT 1 cut(s) 848
Eco24I GRGCYC 3 cut(s) 24, 306, 599
Eco31I GGTCTC 1 cut(s) 348
Eco53kI GAGCTC 1 cut(s) 597
Eco88I CYCGRG 2 cut(s) 96, 790
EcoICRI GAGCTC 1 cut(s) 597
EcoRII CCWGG 2 cut(s) 44, 693
EcoT22I ATGCAT 1 cut(s) 648
EcoT38I GRGCYC 3 cut(s) 24, 306, 599
FaeI CATG 5 cut(s) 58, 116, 218, 464, 650
FaiI YATR 9 cut(s) 56, 72, 114, 130, 216, 462, 603, 609, 648
FatI CATG 5 cut(s) 54, 112, 214, 460, 646
FauI CCCGC 1 cut(s) 465
FbaI TGATCA 1 cut(s) 604
Fnu4HI GCNGC 6 cut(s) 686, 689, 746, 749, 752, 755
FokI GGATG 1 cut(s) 677
FriOI GRGCYC 3 cut(s) 24, 306, 599
Fsp4HI GCNGC 6 cut(s) 686, 689, 746, 749, 752, 755
FspBI CTAG 1 cut(s) 365
GlaI GCGC 1 cut(s) 692
GluI GCNGC 6 cut(s) 686, 689, 746, 749, 752, 755
GsaI CCCAGC 1 cut(s) 15
GsuI CTGGAG 1 cut(s) 260
HaeII RGCGCY 1 cut(s) 694
HaeIII GGCC 3 cut(s) 190, 848, 941
HapII CCGG 2 cut(s) 64, 791
HgaI GACGC 2 cut(s) 216, 743
HhaI GCGC 1 cut(s) 693
Hin1I GRCGYC 1 cut(s) 735
Hin1II CATG 5 cut(s) 58, 116, 218, 464, 650
Hin6I GCGC 1 cut(s) 691
HinP1I GCGC 1 cut(s) 691
HinfI GANTC 3 cut(s) 137, 502, 776
HpaII CCGG 2 cut(s) 64, 791
HphI GGTGA 1 cut(s) 526
Hpy188I TCNGA 1 cut(s) 723
Hpy188III TCNNGA 6 cut(s) 134, 146, 209, 277, 662, 833
Hpy99I CGWCG 1 cut(s) 737
HpyAV CCTTC 4 cut(s) 112, 286, 292, 838
HpyCH4III ACNGT 2 cut(s) 243, 542
HpyCH4IV ACGT 1 cut(s) 490
HpyCH4V TGCA 7 cut(s) 158, 464, 552, 646, 782, 821, 827
HpyF10VI GCNNNNNNNGC 4 cut(s) 716, 751, 754, 932
HpyF3I CTNAG 6 cut(s) 453, 510, 720, 806, 885, 943
HpySE526I ACGT 1 cut(s) 490
Hsp92I GRCGYC 1 cut(s) 735
Hsp92II CATG 5 cut(s) 58, 116, 218, 464, 650
HspAI GCGC 1 cut(s) 691
Ksp22I TGATCA 1 cut(s) 604
Kzo9I GATC 5 cut(s) 205, 604, 667, 829, 835
LmnI GCTCC 3 cut(s) 121, 602, 682
Lsp1109I GCAGC 6 cut(s) 697, 700, 757, 760, 763, 766
LweI GCATC 1 cut(s) 791
MaeI CTAG 1 cut(s) 365
MaeII ACGT 1 cut(s) 490
MaeIII GTNAC 3 cut(s) 138, 243, 542
MalI GATC 5 cut(s) 207, 606, 669, 831, 837
MboI GATC 5 cut(s) 205, 604, 667, 829, 835
MboII GAAGA 8 cut(s) 395, 398, 419, 435, 458, 511, 785, 858
MhlI GDGCHC 3 cut(s) 24, 306, 599
MluCI AATT 6 cut(s) 32, 164, 324, 566, 578, 854
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 2 cut(s) 84, 352
MnlI CCTC 8 cut(s) 154, 448, 469, 505, 693, 892, 901, 952
Mph1103I ATGCAT 1 cut(s) 648
MroXI GAANNNNTTC 1 cut(s) 414
MseI TTAA 2 cut(s) 180, 627
MspI CCGG 2 cut(s) 64, 791
MspR9I CCNGG 4 cut(s) 46, 695, 791, 792
MvaI CCWGG 2 cut(s) 46, 695
MwoI GCNNNNNNNGC 4 cut(s) 716, 751, 754, 932
NciI CCSGG 2 cut(s) 791, 792
NdeII GATC 5 cut(s) 205, 604, 667, 829, 835
NlaIII CATG 5 cut(s) 58, 116, 218, 464, 650
NlaIV GGNNCC 1 cut(s) 880
NmuCI GTSAC 2 cut(s) 138, 542
NsiI ATGCAT 1 cut(s) 648
NspI RCATGY 3 cut(s) 58, 218, 464
PceI AGGCCT 1 cut(s) 848
PciI ACATGT 2 cut(s) 54, 214
PcsI WCGNNNNNNNCGW 1 cut(s) 667
PdmI GAANNNNTTC 1 cut(s) 414
PfeI GAWTC 2 cut(s) 502, 776
PflMI CCANNNNNTGG 2 cut(s) 66, 283
PinAI ACCGGT 1 cut(s) 63
PkrI GCNGC 6 cut(s) 687, 690, 747, 750, 753, 756
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
PscI ACATGT 2 cut(s) 54, 214
PshBI ATTAAT 1 cut(s) 180
Psp124BI GAGCTC 1 cut(s) 599
Psp6I CCWGG 2 cut(s) 44, 693
PspFI CCCAGC 1 cut(s) 11
PspGI CCWGG 2 cut(s) 44, 693
PspN4I GGNNCC 1 cut(s) 880
RsaI GTAC 1 cut(s) 652
RsaNI GTAC 1 cut(s) 651
SacI GAGCTC 1 cut(s) 599
SaqAI TTAA 2 cut(s) 180, 627
SatI GCNGC 6 cut(s) 686, 689, 746, 749, 752, 755
Sau3AI GATC 5 cut(s) 205, 604, 667, 829, 835
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 4 cut(s) 46, 695, 791, 792
SduI GDGCHC 3 cut(s) 24, 306, 599
SfaNI GCATC 1 cut(s) 791
SmaI CCCGGG 1 cut(s) 792
SmlI CTYRAG 2 cut(s) 17, 592
SmoI CTYRAG 2 cut(s) 17, 592
Sse9I AATT 6 cut(s) 32, 164, 324, 566, 578, 854
SseBI AGGCCT 1 cut(s) 848
SsiI CCGC 1 cut(s) 472
SspI AATATT 1 cut(s) 415
SspMI CTAG 1 cut(s) 365
SstI GAGCTC 1 cut(s) 599
StuI AGGCCT 1 cut(s) 848
StyD4I CCNGG 4 cut(s) 44, 693, 789, 790
TaaI ACNGT 2 cut(s) 243, 542
TaiI ACGT 1 cut(s) 493
TasI AATT 6 cut(s) 32, 164, 324, 566, 578, 854
TfiI GAWTC 2 cut(s) 502, 776
Tru1I TTAA 2 cut(s) 180, 627
Tru9I TTAA 2 cut(s) 180, 627
TscAI CASTG 1 cut(s) 942
TseFI GTSAC 2 cut(s) 138, 542
TseI GCWGC 6 cut(s) 685, 688, 745, 748, 751, 754
Tsp45I GTSAC 2 cut(s) 138, 542
TspDTI ATGAA 3 cut(s) 17, 330, 650
TspMI CCCGGG 1 cut(s) 790
TspRI CASTG 1 cut(s) 942
Van91I CCANNNNNTGG 2 cut(s) 66, 283
VspI ATTAAT 1 cut(s) 180
XapI RAATTY 4 cut(s) 32, 164, 578, 854
XceI RCATGY 3 cut(s) 58, 218, 464
XmaI CCCGGG 1 cut(s) 790
XmnI GAANNNNTTC 1 cut(s) 414
XspI CTAG 1 cut(s) 365
Zsp2I ATGCAT 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.