FvH4_6g08510

G patch domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0010106
Physical Location & Seq
Reverse (-)
5037024 .. 5040435
3412 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g08510.t1

Sequence Viewer

Length: 918 bp
ATGTCCAACCGATGGTATAACAGTAGACAGGAGACAAACGCCCGAGACAAACAGCAACATGAGAAGGAGCAGGCATATCAGGAGTCACTTCTTGATGATCTAGCAGAGGAATTTAGACTTCCTATCAATCAAAGGCCAACAGAAAATGTTGATCTGGAACACGTGGAACAAGCGTCGTTAGATAGACAGTTACCGTCATCTAACATTGGTTTTCGGCTTCTCCAGAAAATGGGGTGGAAGGGGAAGGGGCTCGGTAAAGATGAACAAGGAATTGTTGAGCCAATAAAATCTGGAATTAGAGACCCAAGACTAGGAGTAGGAAAACAAGAAGAAGACGATTATTTTACTGCGGAAGAAAATATTCAAAGAAGAAAACTTGATGTTGAGATGGAAGAGACCGAGGAACATGCAAAGAAGCGGGAGGTTTTAGCAGAACGTGAGCAGAAAATTCAAACTGAGGTGAAAGAAATACGCAAAGTGTTCTTCTGTGACCTGTGCAACAAACAGTACAAATTGGCTGTGGAATTTGAAACTCACTTGAGCTCCTATGATCACAATCACAGGAAGCGTTTTAAAGAAATGAAAGAAATGCATGGTTCAAGTGGTCGGGATGATCGCCAAAAACGGGAGCAGCAGCGCCAGGAGAAGGAAATGGCAAAGTTTGCTCAGATGAGTGCCGATGCCCGTAAGCAGCAGCAGCTACAACAACAGCAAGAAGAATCTGCATCTGCCCCAGGTTCTGCTGAACTGAGAAGTGCAACTGCACTTGCAGATCAAGATCAAAGGAAGGCTTTGAAATTTGGGTTTTCTTCTAAAGGTGGCACCTCTAAGACATCATTTGGTAGTGCTTCAAAGAAGCCAAAAGTAGCAAAAGTACCCGTGGCCTCAGTATTTGGCAATGATAGCGATGAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch zf-C2H2_jaz

Protein Analysis

306

Amino Acids

35.21

Weight (kDa)

6.45

Isoelectric Point (pI)

61.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch PF01585 67 - 107 9.8e-17 G-patch domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 821
AccB7I CCANNNNNTGG 2 cut(s) 12, 229
AccI GTMKAC 1 cut(s) 25
AciI CCGC 2 cut(s) 350, 418
AcsI RAATTY 4 cut(s) 110, 447, 524, 797
AcvI CACGTG 1 cut(s) 163
AfaI GTAC 2 cut(s) 509, 876
AfiI CCNNNNNNNGG 5 cut(s) 12, 229, 311, 625, 646
AflIII ACRYGT 1 cut(s) 160
AgsI TTSAA 6 cut(s) 365, 452, 530, 600, 796, 852
AjnI CCWGG 2 cut(s) 639, 733
AluBI AGCT 2 cut(s) 543, 700
AluI AGCT 2 cut(s) 543, 700
Alw21I GWGCWC 1 cut(s) 545
Alw26I GTCTC 4 cut(s) 26, 39, 294, 389
AlwNI CAGNNNCTG 1 cut(s) 740
Ama87I CYCGRG 1 cut(s) 42
AoxI GGCC 2 cut(s) 134, 882
ApeKI GCWGC 5 cut(s) 631, 634, 691, 694, 697
ApoI RAATTY 4 cut(s) 110, 447, 524, 797
Asp700I GAANNNNTTC 1 cut(s) 360
AspLEI GCGC 1 cut(s) 639
AsuHPI GGTGA 1 cut(s) 472
AvaI CYCGRG 1 cut(s) 42
BanI GGYRCC 1 cut(s) 821
BanII GRGCYC 2 cut(s) 252, 545
BbrPI CACGTG 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 339
Bbv12I GWGCWC 1 cut(s) 545
BbvI GCAGC 5 cut(s) 643, 646, 703, 706, 709
BccI CCATC 2 cut(s) 6, 382
BcgI CGANNNNNNTGC 2 cut(s) 389, 423
BciT130I CCWGG 2 cut(s) 641, 735
BclI TGATCA 1 cut(s) 550
BcoDI GTCTC 4 cut(s) 26, 39, 294, 389
BfaI CTAG 2 cut(s) 101, 311
BfoI RGCGCY 1 cut(s) 640
BisI GCNGC 5 cut(s) 632, 635, 692, 695, 698
BlsI GCNGC 5 cut(s) 633, 636, 693, 696, 699
Bme1390I CCNGG 2 cut(s) 641, 735
BmeT110I CYCGRG 1 cut(s) 42
BmiI GGNNCC 1 cut(s) 823
BmrFI CCNGG 2 cut(s) 641, 735
BmsI GCATC 2 cut(s) 670, 734
BpiI GAAGAC 1 cut(s) 339
BpmI CTGGAG 1 cut(s) 206
BpuEI CTTGAG 1 cut(s) 559
BsaAI YACGTR 1 cut(s) 163
BsaBI GATNNNNATC 2 cut(s) 555, 777
BsaI GGTCTC 2 cut(s) 294, 389
BsaJI CCNNGG 3 cut(s) 399, 733, 879
BsaXI ACNNNNNCTCC 2 cut(s) 527, 557
Bsc4I CCNNNNNNNGG 5 cut(s) 12, 229, 311, 625, 646
Bse3DI GCAATG 1 cut(s) 904
Bse8I GATNNNNATC 2 cut(s) 555, 777
BseBI CCWGG 2 cut(s) 641, 735
BseDI CCNNGG 3 cut(s) 399, 733, 879
BseGI GGATG 1 cut(s) 616
BseJI GATNNNNATC 2 cut(s) 555, 777
BseLI CCNNNNNNNGG 5 cut(s) 12, 229, 311, 625, 646
BseMI GCAATG 1 cut(s) 904
BseMII CTCAG 4 cut(s) 447, 680, 740, 900
BseXI GCAGC 5 cut(s) 643, 646, 703, 706, 709
BsgI GTGCAG 1 cut(s) 747
BshFI GGCC 2 cut(s) 136, 884
BshNI GGYRCC 1 cut(s) 821
BsiHKAI GWGCWC 1 cut(s) 545
BsiHKCI CYCGRG 1 cut(s) 42
BslI CCNNNNNNNGG 5 cut(s) 12, 229, 311, 625, 646
BsmAI GTCTC 4 cut(s) 26, 39, 294, 389
BsnI GGCC 2 cut(s) 136, 884
Bso31I GGTCTC 2 cut(s) 294, 389
BsoBI CYCGRG 1 cut(s) 42
Bsp1286I GDGCHC 2 cut(s) 252, 545
Bsp143I GATC 6 cut(s) 97, 151, 550, 613, 772, 778
BspACI CCGC 2 cut(s) 350, 418
BspANI GGCC 2 cut(s) 136, 884
BspCNI CTCAG 4 cut(s) 448, 679, 741, 899
BspLI GGNNCC 1 cut(s) 823
BspT107I GGYRCC 1 cut(s) 821
BspTNI GGTCTC 2 cut(s) 294, 389
BsrDI GCAATG 1 cut(s) 904
BssECI CCNNGG 3 cut(s) 399, 733, 879
BssMI GATC 6 cut(s) 97, 151, 550, 613, 772, 778
Bst2UI CCWGG 2 cut(s) 641, 735
Bst4CI ACNGT 4 cut(s) 23, 189, 195, 507
Bst6I CTCTTC 1 cut(s) 387
BstAPI GCANNNNNTGC 1 cut(s) 662
BstBAI YACGTR 1 cut(s) 163
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 5 cut(s) 456, 666, 749, 828, 886
BstDSI CCRYGG 1 cut(s) 879
BstF5I GGATG 1 cut(s) 616
BstH2I RGCGCY 1 cut(s) 640
BstHHI GCGC 1 cut(s) 639
BstKTI GATC 6 cut(s) 100, 154, 553, 616, 775, 781
BstMAI GTCTC 4 cut(s) 26, 39, 294, 389
BstMBI GATC 6 cut(s) 97, 151, 550, 613, 772, 778
BstMWI GCNNNNNNNGC 3 cut(s) 662, 697, 903
BstNI CCWGG 2 cut(s) 641, 735
BstNSI RCATGY 1 cut(s) 410
BstSCI CCNGG 2 cut(s) 639, 733
BstV1I GCAGC 5 cut(s) 643, 646, 703, 706, 709
BstV2I GAAGAC 1 cut(s) 339
BsuRI GGCC 2 cut(s) 136, 884
BtgI CCRYGG 1 cut(s) 879
BtsCI GGATG 1 cut(s) 616
Cac8I GCNNGC 1 cut(s) 72
CaiI CAGNNNCTG 1 cut(s) 740
CfoI GCGC 1 cut(s) 639
CseI GACGC 1 cut(s) 162
Csp6I GTAC 2 cut(s) 508, 875
CviAII CATG 3 cut(s) 59, 407, 593
CviQI GTAC 2 cut(s) 508, 875
DdeI CTNAG 5 cut(s) 456, 666, 749, 828, 886
DpnI GATC 6 cut(s) 99, 153, 552, 615, 774, 780
DpnII GATC 6 cut(s) 97, 151, 550, 613, 772, 778
DraI TTTAAA 1 cut(s) 574
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
Ecl136II GAGCTC 1 cut(s) 543
Eco24I GRGCYC 2 cut(s) 252, 545
Eco31I GGTCTC 2 cut(s) 294, 389
Eco53kI GAGCTC 1 cut(s) 543
Eco72I CACGTG 1 cut(s) 163
Eco88I CYCGRG 1 cut(s) 42
EcoICRI GAGCTC 1 cut(s) 543
EcoRII CCWGG 2 cut(s) 639, 733
EcoT22I ATGCAT 1 cut(s) 594
EcoT38I GRGCYC 2 cut(s) 252, 545
FaeI CATG 3 cut(s) 62, 410, 596
FaiI YATR 6 cut(s) 18, 60, 76, 408, 549, 594
FalI AAGNNNNNCTT 2 cut(s) 775, 807
FatI CATG 3 cut(s) 58, 406, 592
FauI CCCGC 1 cut(s) 411
FbaI TGATCA 1 cut(s) 550
FblI GTMKAC 1 cut(s) 25
Fnu4HI GCNGC 5 cut(s) 632, 635, 692, 695, 698
FokI GGATG 1 cut(s) 623
FriOI GRGCYC 2 cut(s) 252, 545
Fsp4HI GCNGC 5 cut(s) 632, 635, 692, 695, 698
FspBI CTAG 2 cut(s) 101, 311
GlaI GCGC 1 cut(s) 638
GluI GCNGC 5 cut(s) 632, 635, 692, 695, 698
GsuI CTGGAG 1 cut(s) 206
HaeII RGCGCY 1 cut(s) 640
HaeIII GGCC 2 cut(s) 136, 884
HgaI GACGC 1 cut(s) 162
HhaI GCGC 1 cut(s) 639
Hin1II CATG 3 cut(s) 62, 410, 596
Hin6I GCGC 1 cut(s) 637
HinP1I GCGC 1 cut(s) 637
HinfI GANTC 2 cut(s) 83, 719
HphI GGTGA 1 cut(s) 472
Hpy166II GTNNAC 1 cut(s) 26
Hpy188I TCNGA 1 cut(s) 669
Hpy188III TCNNGA 7 cut(s) 80, 92, 155, 223, 291, 608, 776
Hpy8I GTNNAC 1 cut(s) 26
Hpy99I CGWCG 1 cut(s) 178
HpyAV CCTTC 5 cut(s) 58, 232, 238, 640, 781
HpyCH4III ACNGT 4 cut(s) 23, 189, 195, 507
HpyCH4IV ACGT 2 cut(s) 162, 436
HpyCH4V TGCA 7 cut(s) 410, 498, 592, 725, 758, 764, 770
HpyF10VI GCNNNNNNNGC 3 cut(s) 662, 697, 903
HpyF3I CTNAG 5 cut(s) 456, 666, 749, 828, 886
HpySE526I ACGT 2 cut(s) 162, 436
Hsp92II CATG 3 cut(s) 62, 410, 596
HspAI GCGC 1 cut(s) 637
Ksp22I TGATCA 1 cut(s) 550
Kzo9I GATC 6 cut(s) 97, 151, 550, 613, 772, 778
LmnI GCTCC 3 cut(s) 67, 548, 628
Lsp1109I GCAGC 5 cut(s) 643, 646, 703, 706, 709
LweI GCATC 2 cut(s) 670, 734
MaeI CTAG 2 cut(s) 101, 311
MaeII ACGT 2 cut(s) 162, 436
MaeIII GTNAC 3 cut(s) 84, 189, 488
MalI GATC 6 cut(s) 99, 153, 552, 615, 774, 780
MboI GATC 6 cut(s) 97, 151, 550, 613, 772, 778
MboII GAAGA 8 cut(s) 341, 344, 365, 381, 404, 475, 728, 801
MhlI GDGCHC 2 cut(s) 252, 545
MluCI AATT 7 cut(s) 110, 270, 294, 447, 512, 524, 797
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 30
MnlI CCTC 6 cut(s) 100, 394, 415, 451, 835, 895
Mph1103I ATGCAT 1 cut(s) 594
MroXI GAANNNNTTC 1 cut(s) 360
MseI TTAA 1 cut(s) 573
MspR9I CCNGG 2 cut(s) 641, 735
MvaI CCWGG 2 cut(s) 641, 735
MwoI GCNNNNNNNGC 3 cut(s) 662, 697, 903
NdeII GATC 6 cut(s) 97, 151, 550, 613, 772, 778
NlaIII CATG 3 cut(s) 62, 410, 596
NlaIV GGNNCC 1 cut(s) 823
NmuCI GTSAC 2 cut(s) 84, 488
NsiI ATGCAT 1 cut(s) 594
NspI RCATGY 1 cut(s) 410
PdmI GAANNNNTTC 1 cut(s) 360
PfeI GAWTC 1 cut(s) 719
PflMI CCANNNNNTGG 2 cut(s) 12, 229
PkrI GCNGC 5 cut(s) 633, 636, 693, 696, 699
PleI GAGTC 1 cut(s) 91
PmaCI CACGTG 1 cut(s) 163
PmlI CACGTG 1 cut(s) 163
PpsI GAGTC 1 cut(s) 91
Ppu21I YACGTR 1 cut(s) 163
Psp124BI GAGCTC 1 cut(s) 545
Psp6I CCWGG 2 cut(s) 639, 733
PspCI CACGTG 1 cut(s) 163
PspGI CCWGG 2 cut(s) 639, 733
PspN4I GGNNCC 1 cut(s) 823
PstNI CAGNNNCTG 1 cut(s) 740
RsaI GTAC 2 cut(s) 509, 876
RsaNI GTAC 2 cut(s) 508, 875
SacI GAGCTC 1 cut(s) 545
SaqAI TTAA 1 cut(s) 573
SatI GCNGC 5 cut(s) 632, 635, 692, 695, 698
Sau3AI GATC 6 cut(s) 97, 151, 550, 613, 772, 778
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 2 cut(s) 641, 735
SduI GDGCHC 2 cut(s) 252, 545
SfaNI GCATC 2 cut(s) 670, 734
SmlI CTYRAG 1 cut(s) 538
SmoI CTYRAG 1 cut(s) 538
Sse9I AATT 7 cut(s) 110, 270, 294, 447, 512, 524, 797
SsiI CCGC 2 cut(s) 350, 418
SspI AATATT 1 cut(s) 361
SspMI CTAG 2 cut(s) 101, 311
SstI GAGCTC 1 cut(s) 545
StyD4I CCNGG 2 cut(s) 639, 733
TaaI ACNGT 4 cut(s) 23, 189, 195, 507
TaiI ACGT 2 cut(s) 165, 439
TaqII GACCGA 1 cut(s) 413
TasI AATT 7 cut(s) 110, 270, 294, 447, 512, 524, 797
TatI WGTACW 1 cut(s) 507
TfiI GAWTC 1 cut(s) 719
Tru1I TTAA 1 cut(s) 573
Tru9I TTAA 1 cut(s) 573
TseFI GTSAC 2 cut(s) 84, 488
TseI GCWGC 5 cut(s) 631, 634, 691, 694, 697
Tsp45I GTSAC 2 cut(s) 84, 488
TspDTI ATGAA 2 cut(s) 276, 596
Van91I CCANNNNNTGG 2 cut(s) 12, 229
XapI RAATTY 4 cut(s) 110, 447, 524, 797
XceI RCATGY 1 cut(s) 410
XmiI GTMKAC 1 cut(s) 25
XmnI GAANNNNTTC 1 cut(s) 360
XspI CTAG 2 cut(s) 101, 311
Zsp2I ATGCAT 1 cut(s) 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.