Rh3BG091100

G patch domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0010106
Physical Location & Seq
Reverse (-)
7085184 .. 7088852
3669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG091100.1

Sequence Viewer

Length: 1032 bp
ATGAAGGTAGCTGGGCTTGAGCCCAACCAAACCGCAGATTACGAGATCGGAAGCAGCTTTGGGTTTCTCTCTCTCTCTCTAGCTCGCAAATTCAACTCCACCAGGCAGGACATGTCCAACCGGTGGTATAACAATAGACAGGAAACAAGCACCCGAGACAAACAGCAACATGAGAAGGAGCAGGCATATCAGGAGTCACTTCTTGATGATTTTGCAGAGGAATTTAGACTTCCTATTAATCAAAGGCCAACAGAAAATGTTGATCTGGAACATGTGGAACAAGCGTCATTGGACAGACAGTTACCATCATCTAACATTGGTTTTCGGCTTCTCCAGAAAATGGGGTGGAAGGGGAAGGGGCTCGGTAAAGATGAACAAGGAATTGTTGAGCCAATAAAATCTGGGATTAGAGACCCAAAACTAGGAGTTGGAAAACAAGAAGAAGATGATTATTTTACAGCAGAAGAAAATATTCAAAGAAGAAAACTTGATGTTGAGATGGAAGAGACTGAGGAACATGCAAAGAAGCGGGAGGTTTTAGCAGAACGTGAGCAGAAAATTCAAACTGAGGTGAAAGAAATACGCAAGGTGTTCTACTGTGACCTGTGCAACAAACAATACAAATTGGCTGTGGAATTTGAAGCTCACTTGAGCTCCTATGATCATAATCACAGGAAGCGTTTTAAAGAAATGAAAGAAATGCATGGTACAAGCAGTCGGGATGATCGTCAAAAACGGGAGCAGCAGCGCCAGGAGAGGGAAATGGCAAAGTTTGCTCAGATGAGTGCCGACGCCCGTAAGCAGCAGCAGCAGCTACAACAACAGCAAGAAGAATCTGCATCAGCCCCGGGTTCTGCTGAACTGAGAAGTGCTACTGCACTTGCAGATCAAGATCAAAGGAAGGCCTTGAAATTTGGGTTTTCTTCTAAAGGTGGCACCTCTAAGACCTCGTTTGGTAGTGCTTCAAAGAAGCCAAAAGTAGCAAAAGTAGCTGTGGCCTCAGTATTTGGCAATGATAGTGATGAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch zf-C2H2_jaz

Protein Analysis

343

Amino Acids

39.47

Weight (kDa)

6.46

Isoelectric Point (pI)

57.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch PF01585 104 - 144 5.6e-16 G-patch domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 935
AccB7I CCANNNNNTGG 2 cut(s) 123, 340
AciI CCGC 2 cut(s) 33, 529
AcsI RAATTY 5 cut(s) 89, 221, 558, 635, 911
AcyI GRCGYC 1 cut(s) 792
AfaI GTAC 1 cut(s) 709
AfiI CCNNNNNNNGG 4 cut(s) 123, 340, 422, 757
AflIII ACRYGT 2 cut(s) 111, 271
AgeI ACCGGT 1 cut(s) 120
AgsI TTSAA 6 cut(s) 94, 476, 563, 641, 910, 966
AjnI CCWGG 2 cut(s) 101, 750
AluBI AGCT 7 cut(s) 11, 57, 83, 644, 654, 814, 992
AluI AGCT 7 cut(s) 11, 57, 83, 644, 654, 814, 992
Alw21I GWGCWC 1 cut(s) 656
Alw26I GTCTC 3 cut(s) 150, 405, 500
Ama87I CYCGRG 2 cut(s) 153, 847
AoxI GGCC 3 cut(s) 245, 903, 996
ApeKI GCWGC 7 cut(s) 54, 742, 745, 802, 805, 808, 811
ApoI RAATTY 5 cut(s) 89, 221, 558, 635, 911
AseI ATTAAT 1 cut(s) 237
AsiGI ACCGGT 1 cut(s) 120
Asp700I GAANNNNTTC 1 cut(s) 471
AspLEI GCGC 1 cut(s) 750
AsuC2I CCSGG 2 cut(s) 848, 849
AsuHPI GGTGA 1 cut(s) 583
AvaI CYCGRG 2 cut(s) 153, 847
BanI GGYRCC 1 cut(s) 935
BanII GRGCYC 3 cut(s) 24, 363, 656
Bbv12I GWGCWC 1 cut(s) 656
BbvI GCAGC 7 cut(s) 66, 754, 757, 814, 817, 820, 823
BccI CCATC 2 cut(s) 313, 493
BciT130I CCWGG 2 cut(s) 103, 752
BclI TGATCA 1 cut(s) 661
BcnI CCSGG 2 cut(s) 848, 849
BcoDI GTCTC 3 cut(s) 150, 405, 500
BfaI CTAG 2 cut(s) 80, 422
BfoI RGCGCY 1 cut(s) 751
BisI GCNGC 7 cut(s) 55, 743, 746, 803, 806, 809, 812
BlsI GCNGC 7 cut(s) 56, 744, 747, 804, 807, 810, 813
Bme1390I CCNGG 4 cut(s) 103, 752, 848, 849
BmeT110I CYCGRG 2 cut(s) 153, 847
BmiI GGNNCC 1 cut(s) 937
BmrFI CCNGG 4 cut(s) 103, 752, 848, 849
BmsI GCATC 1 cut(s) 848
BpmI CTGGAG 1 cut(s) 317
BpuEI CTTGAG 2 cut(s) 38, 670
BpuMI CCSGG 2 cut(s) 848, 849
BsaBI GATNNNNATC 2 cut(s) 666, 891
BsaHI GRCGYC 1 cut(s) 792
BsaI GGTCTC 1 cut(s) 405
BsaJI CCNNGG 2 cut(s) 846, 847
BsaWI WCCGGW 1 cut(s) 120
BsaXI ACNNNNNCTCC 2 cut(s) 638, 668
Bsc4I CCNNNNNNNGG 4 cut(s) 123, 340, 422, 757
Bse118I RCCGGY 1 cut(s) 120
Bse3DI GCAATG 1 cut(s) 1018
Bse8I GATNNNNATC 2 cut(s) 666, 891
BseBI CCWGG 2 cut(s) 103, 752
BseDI CCNNGG 2 cut(s) 846, 847
BseGI GGATG 1 cut(s) 727
BseJI GATNNNNATC 2 cut(s) 666, 891
BseLI CCNNNNNNNGG 4 cut(s) 123, 340, 422, 757
BseMI GCAATG 1 cut(s) 1018
BseMII CTCAG 5 cut(s) 501, 558, 791, 854, 1014
BseXI GCAGC 7 cut(s) 66, 754, 757, 814, 817, 820, 823
BseYI CCCAGC 1 cut(s) 11
BsgI GTGCAG 1 cut(s) 861
BshFI GGCC 3 cut(s) 247, 905, 998
BshNI GGYRCC 1 cut(s) 935
BshTI ACCGGT 1 cut(s) 120
BsiHKAI GWGCWC 1 cut(s) 656
BsiHKCI CYCGRG 2 cut(s) 153, 847
BsiSI CCGG 2 cut(s) 121, 848
BslI CCNNNNNNNGG 4 cut(s) 123, 340, 422, 757
BsmAI GTCTC 3 cut(s) 150, 405, 500
BsnI GGCC 3 cut(s) 247, 905, 998
Bso31I GGTCTC 1 cut(s) 405
BsoBI CYCGRG 2 cut(s) 153, 847
Bsp1286I GDGCHC 3 cut(s) 24, 363, 656
Bsp143I GATC 6 cut(s) 45, 262, 661, 724, 886, 892
BspACI CCGC 2 cut(s) 33, 529
BspANI GGCC 3 cut(s) 247, 905, 998
BspCNI CTCAG 5 cut(s) 502, 559, 790, 855, 1013
BspLI GGNNCC 1 cut(s) 937
BspT107I GGYRCC 1 cut(s) 935
BspTNI GGTCTC 1 cut(s) 405
BsrDI GCAATG 1 cut(s) 1018
BsrFI RCCGGY 1 cut(s) 120
BssAI RCCGGY 1 cut(s) 120
BssECI CCNNGG 2 cut(s) 846, 847
BssMI GATC 6 cut(s) 45, 262, 661, 724, 886, 892
BssNI GRCGYC 1 cut(s) 792
Bst2UI CCWGG 2 cut(s) 103, 752
Bst4CI ACNGT 2 cut(s) 300, 599
Bst6I CTCTTC 1 cut(s) 498
BstACI GRCGYC 1 cut(s) 792
BstAPI GCANNNNNTGC 1 cut(s) 773
BstC8I GCNNGC 2 cut(s) 85, 183
BstDEI CTNAG 6 cut(s) 510, 567, 777, 863, 942, 1000
BstF5I GGATG 1 cut(s) 727
BstH2I RGCGCY 1 cut(s) 751
BstHHI GCGC 1 cut(s) 750
BstKTI GATC 6 cut(s) 48, 265, 664, 727, 889, 895
BstMAI GTCTC 3 cut(s) 150, 405, 500
BstMBI GATC 6 cut(s) 45, 262, 661, 724, 886, 892
BstMWI GCNNNNNNNGC 4 cut(s) 773, 808, 811, 989
BstNI CCWGG 2 cut(s) 103, 752
BstNSI RCATGY 3 cut(s) 115, 275, 521
BstSCI CCNGG 4 cut(s) 101, 750, 846, 847
BstV1I GCAGC 7 cut(s) 66, 754, 757, 814, 817, 820, 823
BsuRI GGCC 3 cut(s) 247, 905, 998
BtsCI GGATG 1 cut(s) 727
Cac8I GCNNGC 2 cut(s) 85, 183
CfoI GCGC 1 cut(s) 750
Cfr10I RCCGGY 1 cut(s) 120
Cfr9I CCCGGG 1 cut(s) 847
CseI GACGC 2 cut(s) 273, 800
Csp6I GTAC 1 cut(s) 708
CspAI ACCGGT 1 cut(s) 120
CviAII CATG 5 cut(s) 112, 170, 272, 518, 704
CviQI GTAC 1 cut(s) 708
DdeI CTNAG 6 cut(s) 510, 567, 777, 863, 942, 1000
DpnI GATC 6 cut(s) 47, 264, 663, 726, 888, 894
DpnII GATC 6 cut(s) 45, 262, 661, 724, 886, 892
DraI TTTAAA 1 cut(s) 685
Eam1104I CTCTTC 1 cut(s) 498
EarI CTCTTC 1 cut(s) 498
Ecl136II GAGCTC 1 cut(s) 654
Eco147I AGGCCT 1 cut(s) 905
Eco24I GRGCYC 3 cut(s) 24, 363, 656
Eco31I GGTCTC 1 cut(s) 405
Eco53kI GAGCTC 1 cut(s) 654
Eco88I CYCGRG 2 cut(s) 153, 847
EcoICRI GAGCTC 1 cut(s) 654
EcoRII CCWGG 2 cut(s) 101, 750
EcoT22I ATGCAT 1 cut(s) 705
EcoT38I GRGCYC 3 cut(s) 24, 363, 656
FaeI CATG 5 cut(s) 115, 173, 275, 521, 707
FaiI YATR 9 cut(s) 113, 129, 171, 187, 273, 519, 660, 666, 705
FatI CATG 5 cut(s) 111, 169, 271, 517, 703
FauI CCCGC 1 cut(s) 522
FbaI TGATCA 1 cut(s) 661
Fnu4HI GCNGC 7 cut(s) 55, 743, 746, 803, 806, 809, 812
FokI GGATG 1 cut(s) 734
FriOI GRGCYC 3 cut(s) 24, 363, 656
Fsp4HI GCNGC 7 cut(s) 55, 743, 746, 803, 806, 809, 812
FspBI CTAG 2 cut(s) 80, 422
GlaI GCGC 1 cut(s) 749
GluI GCNGC 7 cut(s) 55, 743, 746, 803, 806, 809, 812
GsaI CCCAGC 1 cut(s) 15
GsuI CTGGAG 1 cut(s) 317
HaeII RGCGCY 1 cut(s) 751
HaeIII GGCC 3 cut(s) 247, 905, 998
HapII CCGG 2 cut(s) 121, 848
HgaI GACGC 2 cut(s) 273, 800
HhaI GCGC 1 cut(s) 750
Hin1I GRCGYC 1 cut(s) 792
Hin1II CATG 5 cut(s) 115, 173, 275, 521, 707
Hin6I GCGC 1 cut(s) 748
HinP1I GCGC 1 cut(s) 748
HinfI GANTC 2 cut(s) 194, 833
HpaII CCGG 2 cut(s) 121, 848
HphI GGTGA 1 cut(s) 583
Hpy188I TCNGA 2 cut(s) 50, 780
Hpy188III TCNNGA 6 cut(s) 191, 203, 266, 334, 719, 890
Hpy99I CGWCG 1 cut(s) 794
HpyAV CCTTC 4 cut(s) 169, 343, 349, 895
HpyCH4III ACNGT 2 cut(s) 300, 599
HpyCH4IV ACGT 1 cut(s) 547
HpyCH4V TGCA 7 cut(s) 215, 521, 609, 703, 839, 878, 884
HpyF10VI GCNNNNNNNGC 4 cut(s) 773, 808, 811, 989
HpyF3I CTNAG 6 cut(s) 510, 567, 777, 863, 942, 1000
HpySE526I ACGT 1 cut(s) 547
Hsp92I GRCGYC 1 cut(s) 792
Hsp92II CATG 5 cut(s) 115, 173, 275, 521, 707
HspAI GCGC 1 cut(s) 748
Ksp22I TGATCA 1 cut(s) 661
Kzo9I GATC 6 cut(s) 45, 262, 661, 724, 886, 892
LmnI GCTCC 3 cut(s) 178, 659, 739
Lsp1109I GCAGC 7 cut(s) 66, 754, 757, 814, 817, 820, 823
LweI GCATC 1 cut(s) 848
MaeI CTAG 2 cut(s) 80, 422
MaeII ACGT 1 cut(s) 547
MaeIII GTNAC 3 cut(s) 195, 300, 599
MalI GATC 6 cut(s) 47, 264, 663, 726, 888, 894
MboI GATC 6 cut(s) 45, 262, 661, 724, 886, 892
MboII GAAGA 7 cut(s) 452, 455, 476, 492, 515, 842, 915
MhlI GDGCHC 3 cut(s) 24, 363, 656
MluCI AATT 7 cut(s) 89, 221, 381, 558, 623, 635, 911
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 2 cut(s) 141, 409
MnlI CCTC 8 cut(s) 211, 505, 526, 562, 750, 949, 958, 1009
Mph1103I ATGCAT 1 cut(s) 705
MroXI GAANNNNTTC 1 cut(s) 471
MseI TTAA 2 cut(s) 237, 684
MspI CCGG 2 cut(s) 121, 848
MspR9I CCNGG 4 cut(s) 103, 752, 848, 849
MvaI CCWGG 2 cut(s) 103, 752
MwoI GCNNNNNNNGC 4 cut(s) 773, 808, 811, 989
NciI CCSGG 2 cut(s) 848, 849
NdeII GATC 6 cut(s) 45, 262, 661, 724, 886, 892
NlaIII CATG 5 cut(s) 115, 173, 275, 521, 707
NlaIV GGNNCC 1 cut(s) 937
NmuCI GTSAC 2 cut(s) 195, 599
NsiI ATGCAT 1 cut(s) 705
NspI RCATGY 3 cut(s) 115, 275, 521
PceI AGGCCT 1 cut(s) 905
PciI ACATGT 2 cut(s) 111, 271
PcsI WCGNNNNNNNCGW 1 cut(s) 724
PdmI GAANNNNTTC 1 cut(s) 471
PfeI GAWTC 1 cut(s) 833
PflMI CCANNNNNTGG 2 cut(s) 123, 340
PinAI ACCGGT 1 cut(s) 120
PkrI GCNGC 7 cut(s) 56, 744, 747, 804, 807, 810, 813
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
PscI ACATGT 2 cut(s) 111, 271
PshBI ATTAAT 1 cut(s) 237
Psp124BI GAGCTC 1 cut(s) 656
Psp6I CCWGG 2 cut(s) 101, 750
PspFI CCCAGC 1 cut(s) 11
PspGI CCWGG 2 cut(s) 101, 750
PspN4I GGNNCC 1 cut(s) 937
RsaI GTAC 1 cut(s) 709
RsaNI GTAC 1 cut(s) 708
SacI GAGCTC 1 cut(s) 656
SaqAI TTAA 2 cut(s) 237, 684
SatI GCNGC 7 cut(s) 55, 743, 746, 803, 806, 809, 812
Sau3AI GATC 6 cut(s) 45, 262, 661, 724, 886, 892
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 4 cut(s) 103, 752, 848, 849
SduI GDGCHC 3 cut(s) 24, 363, 656
SfaNI GCATC 1 cut(s) 848
SmaI CCCGGG 1 cut(s) 849
SmlI CTYRAG 2 cut(s) 17, 649
SmoI CTYRAG 2 cut(s) 17, 649
Sse9I AATT 7 cut(s) 89, 221, 381, 558, 623, 635, 911
SseBI AGGCCT 1 cut(s) 905
SsiI CCGC 2 cut(s) 33, 529
SspI AATATT 1 cut(s) 472
SspMI CTAG 2 cut(s) 80, 422
SstI GAGCTC 1 cut(s) 656
StuI AGGCCT 1 cut(s) 905
StyD4I CCNGG 4 cut(s) 101, 750, 846, 847
TaaI ACNGT 2 cut(s) 300, 599
TaiI ACGT 1 cut(s) 550
TasI AATT 7 cut(s) 89, 221, 381, 558, 623, 635, 911
TfiI GAWTC 1 cut(s) 833
Tru1I TTAA 2 cut(s) 237, 684
Tru9I TTAA 2 cut(s) 237, 684
TseFI GTSAC 2 cut(s) 195, 599
TseI GCWGC 7 cut(s) 54, 742, 745, 802, 805, 808, 811
Tsp45I GTSAC 2 cut(s) 195, 599
TspDTI ATGAA 3 cut(s) 17, 387, 707
TspMI CCCGGG 1 cut(s) 847
Van91I CCANNNNNTGG 2 cut(s) 123, 340
VspI ATTAAT 1 cut(s) 237
XapI RAATTY 5 cut(s) 89, 221, 558, 635, 911
XceI RCATGY 3 cut(s) 115, 275, 521
XmaI CCCGGG 1 cut(s) 847
XmnI GAANNNNTTC 1 cut(s) 471
XspI CTAG 2 cut(s) 80, 422
Zsp2I ATGCAT 1 cut(s) 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.