RLG00000025148

G patch domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0010106
Physical Location & Seq
Forward (+)
42533868 .. 42537179
3312 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025148

Sequence Viewer

Length: 1020 bp
ATGAAGGTAGCTGGGCTTGAGCCCAATTACGAGATCGGAAGCACCTTTGGGTTTCTCCCTCTCTCTCTAGCTCGCAAATTCAACTCCACCAGGCAAGACATGTCCAACCGATGGTATAACAGTAGACAGGAAACAAGCACCCGAGACAAACAGCAACATGAGAAGGAGCAGGCATATCAGGAGTCACTTCTTGATGATTTTGCAGAGGAATTTAGACTTCCTATTAATCAAAGGCCAACAGAAAATGTTGATCTGGAACATGTGGAACAAGCGTCATTGGACAGACAGTTACCATCATCTAACATTGGTTTTCGGCTTCTCCAGAAAATGGGGTGGAAGGGGAAGGGGCTCGGTAAAGATGAACAAGGAATTGTTGAGCCAATAAAATCTGGGATTAGAGACCCAAAACTAGGAGTTGGAAAACAAGAAGAAGATGATTATTTTACAGCAGAAGAAAATATTCAAAGAAGAAAACTTGATGTTGAGATGGAAGAGACTGAGGAACATGCAAAGAAGCGGGAGGTTTTAGCAGAACGTGAGCAGAAAATTCAAACTGAGGTGAAAGAAATACGCAAGGTGTTCTACTGTGACCTGTGCAACAAACAGTACAAATTGGCTGTGGAATTTGAAGCTCACTTGAGCTCCTATGATCATAATCACAGGAAGCGTTTTAAAGAAATGAAAGAAATGCATGGTACAAGTAGTCGGGATGATCGTCAAAAACGGGAGCAGCAGCGCCAGGAGAGGGAAATGGCAAAGTTTGCTCAGATGAGTGCTGATGCCCGTAAGCAGCAGCAGCAGCTACAACAACAGCAACAAGAATCTGCAGCAGCCCCGGGTTCTGCTGAACTGAGAAGTGCTACTGCACTTGCAGATCAAGATCAAAGGAAGGCCTTGAAATTTGGGTTTTCTTCTAAAGGTGGCACCTCTAAGACCTCTTTTGGTAGTGCTTCAAAGAAGCCAAAAGTAGCAAAAGCAGCTGTGGCCTCGGTATTTGGCAATGATAGTGATGAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch zf-C2H2_jaz

Protein Analysis

340

Amino Acids

39.0

Weight (kDa)

7.08

Isoelectric Point (pI)

59.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch PF01585 100 - 140 5.5e-16 G-patch domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 923
AccB7I CCANNNNNTGG 2 cut(s) 111, 328
AccI GTMKAC 1 cut(s) 124
AciI CCGC 1 cut(s) 517
AcsI RAATTY 5 cut(s) 77, 209, 546, 623, 899
AfaI GTAC 2 cut(s) 608, 697
AfiI CCNNNNNNNGG 4 cut(s) 111, 328, 410, 745
AflIII ACRYGT 2 cut(s) 99, 259
AgsI TTSAA 6 cut(s) 82, 464, 551, 629, 898, 954
AjnI CCWGG 2 cut(s) 89, 738
AluBI AGCT 6 cut(s) 11, 71, 632, 642, 802, 980
AluI AGCT 6 cut(s) 11, 71, 632, 642, 802, 980
Alw21I GWGCWC 1 cut(s) 644
Alw26I GTCTC 3 cut(s) 138, 393, 488
Ama87I CYCGRG 2 cut(s) 141, 835
AoxI GGCC 3 cut(s) 233, 891, 984
ApeKI GCWGC 9 cut(s) 730, 733, 790, 793, 796, 799, 827, 830, 977
ApoI RAATTY 5 cut(s) 77, 209, 546, 623, 899
AseI ATTAAT 1 cut(s) 225
Asp700I GAANNNNTTC 1 cut(s) 459
AspLEI GCGC 1 cut(s) 738
AsuC2I CCSGG 2 cut(s) 836, 837
AsuHPI GGTGA 1 cut(s) 571
AvaI CYCGRG 2 cut(s) 141, 835
BanI GGYRCC 1 cut(s) 923
BanII GRGCYC 3 cut(s) 24, 351, 644
Bbv12I GWGCWC 1 cut(s) 644
BbvI GCAGC 9 cut(s) 742, 745, 802, 805, 808, 811, 839, 842, 989
BccI CCATC 3 cut(s) 105, 301, 481
BciT130I CCWGG 2 cut(s) 91, 740
BclI TGATCA 1 cut(s) 649
BcnI CCSGG 2 cut(s) 836, 837
BcoDI GTCTC 3 cut(s) 138, 393, 488
BfaI CTAG 2 cut(s) 68, 410
BfmI CTRYAG 1 cut(s) 825
BfoI RGCGCY 1 cut(s) 739
BisI GCNGC 9 cut(s) 731, 734, 791, 794, 797, 800, 828, 831, 978
BlsI GCNGC 9 cut(s) 732, 735, 792, 795, 798, 801, 829, 832, 979
Bme1390I CCNGG 4 cut(s) 91, 740, 836, 837
BmeT110I CYCGRG 2 cut(s) 141, 835
BmiI GGNNCC 1 cut(s) 925
BmrFI CCNGG 4 cut(s) 91, 740, 836, 837
BmsI GCATC 1 cut(s) 769
BpmI CTGGAG 1 cut(s) 305
BpuEI CTTGAG 2 cut(s) 38, 658
BpuMI CCSGG 2 cut(s) 836, 837
BsaBI GATNNNNATC 2 cut(s) 654, 879
BsaI GGTCTC 1 cut(s) 393
BsaJI CCNNGG 3 cut(s) 834, 835, 987
BsaXI ACNNNNNCTCC 2 cut(s) 626, 656
Bsc4I CCNNNNNNNGG 4 cut(s) 111, 328, 410, 745
Bse3DI GCAATG 1 cut(s) 1006
Bse8I GATNNNNATC 2 cut(s) 654, 879
BseBI CCWGG 2 cut(s) 91, 740
BseDI CCNNGG 3 cut(s) 834, 835, 987
BseGI GGATG 1 cut(s) 715
BseJI GATNNNNATC 2 cut(s) 654, 879
BseLI CCNNNNNNNGG 4 cut(s) 111, 328, 410, 745
BseMI GCAATG 1 cut(s) 1006
BseMII CTCAG 4 cut(s) 489, 546, 779, 842
BseXI GCAGC 9 cut(s) 742, 745, 802, 805, 808, 811, 839, 842, 989
BseYI CCCAGC 1 cut(s) 11
BsgI GTGCAG 1 cut(s) 849
BshFI GGCC 3 cut(s) 235, 893, 986
BshNI GGYRCC 1 cut(s) 923
BsiHKAI GWGCWC 1 cut(s) 644
BsiHKCI CYCGRG 2 cut(s) 141, 835
BsiSI CCGG 1 cut(s) 836
BslI CCNNNNNNNGG 4 cut(s) 111, 328, 410, 745
BsmAI GTCTC 3 cut(s) 138, 393, 488
BsnI GGCC 3 cut(s) 235, 893, 986
Bso31I GGTCTC 1 cut(s) 393
BsoBI CYCGRG 2 cut(s) 141, 835
Bsp1286I GDGCHC 3 cut(s) 24, 351, 644
Bsp143I GATC 6 cut(s) 33, 250, 649, 712, 874, 880
BspACI CCGC 1 cut(s) 517
BspANI GGCC 3 cut(s) 235, 893, 986
BspCNI CTCAG 4 cut(s) 490, 547, 778, 843
BspLI GGNNCC 1 cut(s) 925
BspMAI CTGCAG 1 cut(s) 829
BspT107I GGYRCC 1 cut(s) 923
BspTNI GGTCTC 1 cut(s) 393
BsrDI GCAATG 1 cut(s) 1006
BssECI CCNNGG 3 cut(s) 834, 835, 987
BssMI GATC 6 cut(s) 33, 250, 649, 712, 874, 880
Bst2UI CCWGG 2 cut(s) 91, 740
Bst4CI ACNGT 4 cut(s) 122, 288, 587, 606
Bst6I CTCTTC 1 cut(s) 486
BstAPI GCANNNNNTGC 1 cut(s) 761
BstC8I GCNNGC 2 cut(s) 73, 171
BstDEI CTNAG 5 cut(s) 498, 555, 765, 851, 930
BstF5I GGATG 1 cut(s) 715
BstH2I RGCGCY 1 cut(s) 739
BstHHI GCGC 1 cut(s) 738
BstKTI GATC 6 cut(s) 36, 253, 652, 715, 877, 883
BstMAI GTCTC 3 cut(s) 138, 393, 488
BstMBI GATC 6 cut(s) 33, 250, 649, 712, 874, 880
BstMWI GCNNNNNNNGC 5 cut(s) 761, 796, 799, 977, 983
BstNI CCWGG 2 cut(s) 91, 740
BstNSI RCATGY 3 cut(s) 103, 263, 509
BstSCI CCNGG 4 cut(s) 89, 738, 834, 835
BstSFI CTRYAG 1 cut(s) 825
BstV1I GCAGC 9 cut(s) 742, 745, 802, 805, 808, 811, 839, 842, 989
BsuRI GGCC 3 cut(s) 235, 893, 986
BtsCI GGATG 1 cut(s) 715
Cac8I GCNNGC 2 cut(s) 73, 171
CfoI GCGC 1 cut(s) 738
Cfr9I CCCGGG 1 cut(s) 835
CseI GACGC 1 cut(s) 261
Csp6I GTAC 2 cut(s) 607, 696
CviAII CATG 5 cut(s) 100, 158, 260, 506, 692
CviQI GTAC 2 cut(s) 607, 696
DdeI CTNAG 5 cut(s) 498, 555, 765, 851, 930
DpnI GATC 6 cut(s) 35, 252, 651, 714, 876, 882
DpnII GATC 6 cut(s) 33, 250, 649, 712, 874, 880
DraI TTTAAA 1 cut(s) 673
Eam1104I CTCTTC 1 cut(s) 486
EarI CTCTTC 1 cut(s) 486
Ecl136II GAGCTC 1 cut(s) 642
Eco147I AGGCCT 1 cut(s) 893
Eco24I GRGCYC 3 cut(s) 24, 351, 644
Eco31I GGTCTC 1 cut(s) 393
Eco53kI GAGCTC 1 cut(s) 642
Eco88I CYCGRG 2 cut(s) 141, 835
EcoICRI GAGCTC 1 cut(s) 642
EcoRII CCWGG 2 cut(s) 89, 738
EcoT22I ATGCAT 1 cut(s) 693
EcoT38I GRGCYC 3 cut(s) 24, 351, 644
FaeI CATG 5 cut(s) 103, 161, 263, 509, 695
FaiI YATR 9 cut(s) 101, 117, 159, 175, 261, 507, 648, 654, 693
FatI CATG 5 cut(s) 99, 157, 259, 505, 691
FauI CCCGC 1 cut(s) 510
FbaI TGATCA 1 cut(s) 649
FblI GTMKAC 1 cut(s) 124
Fnu4HI GCNGC 9 cut(s) 731, 734, 791, 794, 797, 800, 828, 831, 978
FokI GGATG 1 cut(s) 722
FriOI GRGCYC 3 cut(s) 24, 351, 644
Fsp4HI GCNGC 9 cut(s) 731, 734, 791, 794, 797, 800, 828, 831, 978
FspBI CTAG 2 cut(s) 68, 410
GlaI GCGC 1 cut(s) 737
GluI GCNGC 9 cut(s) 731, 734, 791, 794, 797, 800, 828, 831, 978
GsaI CCCAGC 1 cut(s) 15
GsuI CTGGAG 1 cut(s) 305
HaeII RGCGCY 1 cut(s) 739
HaeIII GGCC 3 cut(s) 235, 893, 986
HapII CCGG 1 cut(s) 836
HgaI GACGC 1 cut(s) 261
HhaI GCGC 1 cut(s) 738
Hin1II CATG 5 cut(s) 103, 161, 263, 509, 695
Hin6I GCGC 1 cut(s) 736
HinP1I GCGC 1 cut(s) 736
HinfI GANTC 2 cut(s) 182, 821
HpaII CCGG 1 cut(s) 836
HphI GGTGA 1 cut(s) 571
Hpy166II GTNNAC 1 cut(s) 125
Hpy188I TCNGA 2 cut(s) 38, 768
Hpy188III TCNNGA 6 cut(s) 179, 191, 254, 322, 707, 878
Hpy8I GTNNAC 1 cut(s) 125
HpyAV CCTTC 4 cut(s) 157, 331, 337, 883
HpyCH4III ACNGT 4 cut(s) 122, 288, 587, 606
HpyCH4IV ACGT 1 cut(s) 535
HpyCH4V TGCA 7 cut(s) 203, 509, 597, 691, 827, 866, 872
HpyF10VI GCNNNNNNNGC 5 cut(s) 761, 796, 799, 977, 983
HpyF3I CTNAG 5 cut(s) 498, 555, 765, 851, 930
HpySE526I ACGT 1 cut(s) 535
Hsp92II CATG 5 cut(s) 103, 161, 263, 509, 695
HspAI GCGC 1 cut(s) 736
Ksp22I TGATCA 1 cut(s) 649
Kzo9I GATC 6 cut(s) 33, 250, 649, 712, 874, 880
LmnI GCTCC 3 cut(s) 166, 647, 727
Lsp1109I GCAGC 9 cut(s) 742, 745, 802, 805, 808, 811, 839, 842, 989
LweI GCATC 1 cut(s) 769
MaeI CTAG 2 cut(s) 68, 410
MaeII ACGT 1 cut(s) 535
MaeIII GTNAC 3 cut(s) 183, 288, 587
MalI GATC 6 cut(s) 35, 252, 651, 714, 876, 882
MboI GATC 6 cut(s) 33, 250, 649, 712, 874, 880
MboII GAAGA 6 cut(s) 440, 443, 464, 480, 503, 903
MhlI GDGCHC 3 cut(s) 24, 351, 644
MluCI AATT 8 cut(s) 25, 77, 209, 369, 546, 611, 623, 899
MlyI GAGTC 1 cut(s) 191
MmeI TCCRAC 2 cut(s) 129, 397
MnlI CCTC 9 cut(s) 69, 199, 493, 514, 550, 738, 937, 946, 997
Mph1103I ATGCAT 1 cut(s) 693
MroXI GAANNNNTTC 1 cut(s) 459
MseI TTAA 2 cut(s) 225, 672
MspA1I CMGCKG 1 cut(s) 980
MspI CCGG 1 cut(s) 836
MspR9I CCNGG 4 cut(s) 91, 740, 836, 837
MvaI CCWGG 2 cut(s) 91, 740
MwoI GCNNNNNNNGC 5 cut(s) 761, 796, 799, 977, 983
NciI CCSGG 2 cut(s) 836, 837
NdeII GATC 6 cut(s) 33, 250, 649, 712, 874, 880
NlaIII CATG 5 cut(s) 103, 161, 263, 509, 695
NlaIV GGNNCC 1 cut(s) 925
NmuCI GTSAC 2 cut(s) 183, 587
NsiI ATGCAT 1 cut(s) 693
NspI RCATGY 3 cut(s) 103, 263, 509
PceI AGGCCT 1 cut(s) 893
PciI ACATGT 2 cut(s) 99, 259
PcsI WCGNNNNNNNCGW 1 cut(s) 712
PdmI GAANNNNTTC 1 cut(s) 459
PfeI GAWTC 1 cut(s) 821
PflMI CCANNNNNTGG 2 cut(s) 111, 328
PkrI GCNGC 9 cut(s) 732, 735, 792, 795, 798, 801, 829, 832, 979
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
PscI ACATGT 2 cut(s) 99, 259
PshBI ATTAAT 1 cut(s) 225
Psp124BI GAGCTC 1 cut(s) 644
Psp6I CCWGG 2 cut(s) 89, 738
PspFI CCCAGC 1 cut(s) 11
PspGI CCWGG 2 cut(s) 89, 738
PspN4I GGNNCC 1 cut(s) 925
PstI CTGCAG 1 cut(s) 829
PvuII CAGCTG 1 cut(s) 980
RsaI GTAC 2 cut(s) 608, 697
RsaNI GTAC 2 cut(s) 607, 696
SacI GAGCTC 1 cut(s) 644
SaqAI TTAA 2 cut(s) 225, 672
SatI GCNGC 9 cut(s) 731, 734, 791, 794, 797, 800, 828, 831, 978
Sau3AI GATC 6 cut(s) 33, 250, 649, 712, 874, 880
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 4 cut(s) 91, 740, 836, 837
SduI GDGCHC 3 cut(s) 24, 351, 644
SfaNI GCATC 1 cut(s) 769
SfcI CTRYAG 1 cut(s) 825
SmaI CCCGGG 1 cut(s) 837
SmlI CTYRAG 2 cut(s) 17, 637
SmoI CTYRAG 2 cut(s) 17, 637
Sse9I AATT 8 cut(s) 25, 77, 209, 369, 546, 611, 623, 899
SseBI AGGCCT 1 cut(s) 893
SsiI CCGC 1 cut(s) 517
SspI AATATT 1 cut(s) 460
SspMI CTAG 2 cut(s) 68, 410
SstI GAGCTC 1 cut(s) 644
StuI AGGCCT 1 cut(s) 893
StyD4I CCNGG 4 cut(s) 89, 738, 834, 835
TaaI ACNGT 4 cut(s) 122, 288, 587, 606
TaiI ACGT 1 cut(s) 538
TasI AATT 8 cut(s) 25, 77, 209, 369, 546, 611, 623, 899
TatI WGTACW 1 cut(s) 606
TfiI GAWTC 1 cut(s) 821
Tru1I TTAA 2 cut(s) 225, 672
Tru9I TTAA 2 cut(s) 225, 672
TseFI GTSAC 2 cut(s) 183, 587
TseI GCWGC 9 cut(s) 730, 733, 790, 793, 796, 799, 827, 830, 977
Tsp45I GTSAC 2 cut(s) 183, 587
TspDTI ATGAA 3 cut(s) 17, 375, 695
TspMI CCCGGG 1 cut(s) 835
Van91I CCANNNNNTGG 2 cut(s) 111, 328
VspI ATTAAT 1 cut(s) 225
XapI RAATTY 5 cut(s) 77, 209, 546, 623, 899
XceI RCATGY 3 cut(s) 103, 263, 509
XmaI CCCGGG 1 cut(s) 835
XmiI GTMKAC 1 cut(s) 124
XmnI GAANNNNTTC 1 cut(s) 459
XspI CTAG 2 cut(s) 68, 410
Zsp2I ATGCAT 1 cut(s) 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.