Rh3CG091200

G patch domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0010106
Physical Location & Seq
Reverse (-)
7085184 .. 7088852
3669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG091200.1

Sequence Viewer

Length: 1020 bp
ATGAAGGTAGCTGGGCTTGAGCCCAATTACGAGATCGGAAGCAGCTTTGGGTTTCTCTCTCTCTCTCTAGCTCGCAAATTCAACTCCACCAGGCAGGACATGTCCAACCGGTGGTATAACAATAGACAGGAAACAAGCACCCGAGACAAACAGCAACATGAGAAGGAGCAGGCATATCAGGAGTCACTTCTTGATGATTTTGCAGAGGAATTTAGACTTCCTATTAATCAAAGGCCAACAGAAAATGTTGATCTGGAACATGTGGAACAAGCGTCATTGGACAGACAGTTACCATCATCTAACATTGGTTTTCGGCTTCTCCAGAAAATGGGGTGGAAGGGGAAGGGGCTCGGTAAAGATGAACAAGGAATTGTTGAGCCAATAAAATCTGGGATTAGAGACCCAAAACTAGGAGTTGGAAAACAAGAAGAAGATGATTATTTTACAGCAGAAGAAAATATTCAAAGAAGAAAACTTGATGTTGAGATGGAAGAGACTGAGGAACATGCAAAGAAGCGGGAGGTTTTAGCAGAACGTGAGCAGAAAATTCAAACTGAGGTGAAAGAAATACGCAAGGTGTTCTACTGTGACCTGTGCAACAAACAATACAAATTGGCTGTGGAATTTGAAGCTCACTTGAGCTCCTATGATCATAATCACAGGAAGCGTTTTAAAGAAATGAAAGAAATGCATGGTACAAGCAGTCGGGATGATCGTCAAAAACGGGAGCAGCAGCGCCAGGAGAGGGAAATGGCAAAGTTTGCTCAGATGAGTGCCGACGCCCGTAAGCAGCAGCAGCAGCTACAACAACAGCAAGAAGAATCTGCATCAGCCCCGGGTTCTGCTGAACTGAGAAGTGCTACTGCACTTGCAGATCAAGATCAAAGGAAGGCCTTGAAATTTGGGTTTTCTTCTAAAGGTGGCACCTCTAAGACCTCGTTTGGTAGTGCTTCAAAGAAGCCAAAAGTAGCAAAAGTAGCTGTGGCCTCAGTATTTGGCAATGATAGTGATGAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch zf-C2H2_jaz

Protein Analysis

339

Amino Acids

39.05

Weight (kDa)

6.71

Isoelectric Point (pI)

58.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch PF01585 100 - 140 5.5e-16 G-patch domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 923
AccB7I CCANNNNNTGG 2 cut(s) 111, 328
AciI CCGC 1 cut(s) 517
AcsI RAATTY 5 cut(s) 77, 209, 546, 623, 899
AcyI GRCGYC 1 cut(s) 780
AfaI GTAC 1 cut(s) 697
AfiI CCNNNNNNNGG 4 cut(s) 111, 328, 410, 745
AflIII ACRYGT 2 cut(s) 99, 259
AgeI ACCGGT 1 cut(s) 108
AgsI TTSAA 6 cut(s) 82, 464, 551, 629, 898, 954
AjnI CCWGG 2 cut(s) 89, 738
AluBI AGCT 7 cut(s) 11, 45, 71, 632, 642, 802, 980
AluI AGCT 7 cut(s) 11, 45, 71, 632, 642, 802, 980
Alw21I GWGCWC 1 cut(s) 644
Alw26I GTCTC 3 cut(s) 138, 393, 488
Ama87I CYCGRG 2 cut(s) 141, 835
AoxI GGCC 3 cut(s) 233, 891, 984
ApeKI GCWGC 7 cut(s) 42, 730, 733, 790, 793, 796, 799
ApoI RAATTY 5 cut(s) 77, 209, 546, 623, 899
AseI ATTAAT 1 cut(s) 225
AsiGI ACCGGT 1 cut(s) 108
Asp700I GAANNNNTTC 1 cut(s) 459
AspLEI GCGC 1 cut(s) 738
AsuC2I CCSGG 2 cut(s) 836, 837
AsuHPI GGTGA 1 cut(s) 571
AvaI CYCGRG 2 cut(s) 141, 835
BanI GGYRCC 1 cut(s) 923
BanII GRGCYC 3 cut(s) 24, 351, 644
Bbv12I GWGCWC 1 cut(s) 644
BbvI GCAGC 7 cut(s) 54, 742, 745, 802, 805, 808, 811
BccI CCATC 2 cut(s) 301, 481
BciT130I CCWGG 2 cut(s) 91, 740
BclI TGATCA 1 cut(s) 649
BcnI CCSGG 2 cut(s) 836, 837
BcoDI GTCTC 3 cut(s) 138, 393, 488
BfaI CTAG 2 cut(s) 68, 410
BfoI RGCGCY 1 cut(s) 739
BisI GCNGC 7 cut(s) 43, 731, 734, 791, 794, 797, 800
BlsI GCNGC 7 cut(s) 44, 732, 735, 792, 795, 798, 801
Bme1390I CCNGG 4 cut(s) 91, 740, 836, 837
BmeT110I CYCGRG 2 cut(s) 141, 835
BmiI GGNNCC 1 cut(s) 925
BmrFI CCNGG 4 cut(s) 91, 740, 836, 837
BmsI GCATC 1 cut(s) 836
BpmI CTGGAG 1 cut(s) 305
BpuEI CTTGAG 2 cut(s) 38, 658
BpuMI CCSGG 2 cut(s) 836, 837
BsaBI GATNNNNATC 2 cut(s) 654, 879
BsaHI GRCGYC 1 cut(s) 780
BsaI GGTCTC 1 cut(s) 393
BsaJI CCNNGG 2 cut(s) 834, 835
BsaWI WCCGGW 1 cut(s) 108
BsaXI ACNNNNNCTCC 2 cut(s) 626, 656
Bsc4I CCNNNNNNNGG 4 cut(s) 111, 328, 410, 745
Bse118I RCCGGY 1 cut(s) 108
Bse3DI GCAATG 1 cut(s) 1006
Bse8I GATNNNNATC 2 cut(s) 654, 879
BseBI CCWGG 2 cut(s) 91, 740
BseDI CCNNGG 2 cut(s) 834, 835
BseGI GGATG 1 cut(s) 715
BseJI GATNNNNATC 2 cut(s) 654, 879
BseLI CCNNNNNNNGG 4 cut(s) 111, 328, 410, 745
BseMI GCAATG 1 cut(s) 1006
BseMII CTCAG 5 cut(s) 489, 546, 779, 842, 1002
BseXI GCAGC 7 cut(s) 54, 742, 745, 802, 805, 808, 811
BseYI CCCAGC 1 cut(s) 11
BsgI GTGCAG 1 cut(s) 849
BshFI GGCC 3 cut(s) 235, 893, 986
BshNI GGYRCC 1 cut(s) 923
BshTI ACCGGT 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 644
BsiHKCI CYCGRG 2 cut(s) 141, 835
BsiSI CCGG 2 cut(s) 109, 836
BslI CCNNNNNNNGG 4 cut(s) 111, 328, 410, 745
BsmAI GTCTC 3 cut(s) 138, 393, 488
BsnI GGCC 3 cut(s) 235, 893, 986
Bso31I GGTCTC 1 cut(s) 393
BsoBI CYCGRG 2 cut(s) 141, 835
Bsp1286I GDGCHC 3 cut(s) 24, 351, 644
Bsp143I GATC 6 cut(s) 33, 250, 649, 712, 874, 880
BspACI CCGC 1 cut(s) 517
BspANI GGCC 3 cut(s) 235, 893, 986
BspCNI CTCAG 5 cut(s) 490, 547, 778, 843, 1001
BspLI GGNNCC 1 cut(s) 925
BspT107I GGYRCC 1 cut(s) 923
BspTNI GGTCTC 1 cut(s) 393
BsrDI GCAATG 1 cut(s) 1006
BsrFI RCCGGY 1 cut(s) 108
BssAI RCCGGY 1 cut(s) 108
BssECI CCNNGG 2 cut(s) 834, 835
BssMI GATC 6 cut(s) 33, 250, 649, 712, 874, 880
BssNI GRCGYC 1 cut(s) 780
Bst2UI CCWGG 2 cut(s) 91, 740
Bst4CI ACNGT 2 cut(s) 288, 587
Bst6I CTCTTC 1 cut(s) 486
BstACI GRCGYC 1 cut(s) 780
BstAPI GCANNNNNTGC 1 cut(s) 761
BstC8I GCNNGC 2 cut(s) 73, 171
BstDEI CTNAG 6 cut(s) 498, 555, 765, 851, 930, 988
BstF5I GGATG 1 cut(s) 715
BstH2I RGCGCY 1 cut(s) 739
BstHHI GCGC 1 cut(s) 738
BstKTI GATC 6 cut(s) 36, 253, 652, 715, 877, 883
BstMAI GTCTC 3 cut(s) 138, 393, 488
BstMBI GATC 6 cut(s) 33, 250, 649, 712, 874, 880
BstMWI GCNNNNNNNGC 4 cut(s) 761, 796, 799, 977
BstNI CCWGG 2 cut(s) 91, 740
BstNSI RCATGY 3 cut(s) 103, 263, 509
BstSCI CCNGG 4 cut(s) 89, 738, 834, 835
BstV1I GCAGC 7 cut(s) 54, 742, 745, 802, 805, 808, 811
BsuRI GGCC 3 cut(s) 235, 893, 986
BtsCI GGATG 1 cut(s) 715
Cac8I GCNNGC 2 cut(s) 73, 171
CfoI GCGC 1 cut(s) 738
Cfr10I RCCGGY 1 cut(s) 108
Cfr9I CCCGGG 1 cut(s) 835
CseI GACGC 2 cut(s) 261, 788
Csp6I GTAC 1 cut(s) 696
CspAI ACCGGT 1 cut(s) 108
CviAII CATG 5 cut(s) 100, 158, 260, 506, 692
CviQI GTAC 1 cut(s) 696
DdeI CTNAG 6 cut(s) 498, 555, 765, 851, 930, 988
DpnI GATC 6 cut(s) 35, 252, 651, 714, 876, 882
DpnII GATC 6 cut(s) 33, 250, 649, 712, 874, 880
DraI TTTAAA 1 cut(s) 673
Eam1104I CTCTTC 1 cut(s) 486
EarI CTCTTC 1 cut(s) 486
Ecl136II GAGCTC 1 cut(s) 642
Eco147I AGGCCT 1 cut(s) 893
Eco24I GRGCYC 3 cut(s) 24, 351, 644
Eco31I GGTCTC 1 cut(s) 393
Eco53kI GAGCTC 1 cut(s) 642
Eco88I CYCGRG 2 cut(s) 141, 835
EcoICRI GAGCTC 1 cut(s) 642
EcoRII CCWGG 2 cut(s) 89, 738
EcoT22I ATGCAT 1 cut(s) 693
EcoT38I GRGCYC 3 cut(s) 24, 351, 644
FaeI CATG 5 cut(s) 103, 161, 263, 509, 695
FaiI YATR 9 cut(s) 101, 117, 159, 175, 261, 507, 648, 654, 693
FatI CATG 5 cut(s) 99, 157, 259, 505, 691
FauI CCCGC 1 cut(s) 510
FbaI TGATCA 1 cut(s) 649
Fnu4HI GCNGC 7 cut(s) 43, 731, 734, 791, 794, 797, 800
FokI GGATG 1 cut(s) 722
FriOI GRGCYC 3 cut(s) 24, 351, 644
Fsp4HI GCNGC 7 cut(s) 43, 731, 734, 791, 794, 797, 800
FspBI CTAG 2 cut(s) 68, 410
GlaI GCGC 1 cut(s) 737
GluI GCNGC 7 cut(s) 43, 731, 734, 791, 794, 797, 800
GsaI CCCAGC 1 cut(s) 15
GsuI CTGGAG 1 cut(s) 305
HaeII RGCGCY 1 cut(s) 739
HaeIII GGCC 3 cut(s) 235, 893, 986
HapII CCGG 2 cut(s) 109, 836
HgaI GACGC 2 cut(s) 261, 788
HhaI GCGC 1 cut(s) 738
Hin1I GRCGYC 1 cut(s) 780
Hin1II CATG 5 cut(s) 103, 161, 263, 509, 695
Hin6I GCGC 1 cut(s) 736
HinP1I GCGC 1 cut(s) 736
HinfI GANTC 2 cut(s) 182, 821
HpaII CCGG 2 cut(s) 109, 836
HphI GGTGA 1 cut(s) 571
Hpy188I TCNGA 2 cut(s) 38, 768
Hpy188III TCNNGA 6 cut(s) 179, 191, 254, 322, 707, 878
Hpy99I CGWCG 1 cut(s) 782
HpyAV CCTTC 4 cut(s) 157, 331, 337, 883
HpyCH4III ACNGT 2 cut(s) 288, 587
HpyCH4IV ACGT 1 cut(s) 535
HpyCH4V TGCA 7 cut(s) 203, 509, 597, 691, 827, 866, 872
HpyF10VI GCNNNNNNNGC 4 cut(s) 761, 796, 799, 977
HpyF3I CTNAG 6 cut(s) 498, 555, 765, 851, 930, 988
HpySE526I ACGT 1 cut(s) 535
Hsp92I GRCGYC 1 cut(s) 780
Hsp92II CATG 5 cut(s) 103, 161, 263, 509, 695
HspAI GCGC 1 cut(s) 736
Ksp22I TGATCA 1 cut(s) 649
Kzo9I GATC 6 cut(s) 33, 250, 649, 712, 874, 880
LmnI GCTCC 3 cut(s) 166, 647, 727
Lsp1109I GCAGC 7 cut(s) 54, 742, 745, 802, 805, 808, 811
LweI GCATC 1 cut(s) 836
MaeI CTAG 2 cut(s) 68, 410
MaeII ACGT 1 cut(s) 535
MaeIII GTNAC 3 cut(s) 183, 288, 587
MalI GATC 6 cut(s) 35, 252, 651, 714, 876, 882
MboI GATC 6 cut(s) 33, 250, 649, 712, 874, 880
MboII GAAGA 7 cut(s) 440, 443, 464, 480, 503, 830, 903
MhlI GDGCHC 3 cut(s) 24, 351, 644
MluCI AATT 8 cut(s) 25, 77, 209, 369, 546, 611, 623, 899
MlyI GAGTC 1 cut(s) 191
MmeI TCCRAC 2 cut(s) 129, 397
MnlI CCTC 8 cut(s) 199, 493, 514, 550, 738, 937, 946, 997
Mph1103I ATGCAT 1 cut(s) 693
MroXI GAANNNNTTC 1 cut(s) 459
MseI TTAA 2 cut(s) 225, 672
MspI CCGG 2 cut(s) 109, 836
MspR9I CCNGG 4 cut(s) 91, 740, 836, 837
MvaI CCWGG 2 cut(s) 91, 740
MwoI GCNNNNNNNGC 4 cut(s) 761, 796, 799, 977
NciI CCSGG 2 cut(s) 836, 837
NdeII GATC 6 cut(s) 33, 250, 649, 712, 874, 880
NlaIII CATG 5 cut(s) 103, 161, 263, 509, 695
NlaIV GGNNCC 1 cut(s) 925
NmuCI GTSAC 2 cut(s) 183, 587
NsiI ATGCAT 1 cut(s) 693
NspI RCATGY 3 cut(s) 103, 263, 509
PceI AGGCCT 1 cut(s) 893
PciI ACATGT 2 cut(s) 99, 259
PcsI WCGNNNNNNNCGW 1 cut(s) 712
PdmI GAANNNNTTC 1 cut(s) 459
PfeI GAWTC 1 cut(s) 821
PflMI CCANNNNNTGG 2 cut(s) 111, 328
PinAI ACCGGT 1 cut(s) 108
PkrI GCNGC 7 cut(s) 44, 732, 735, 792, 795, 798, 801
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
PscI ACATGT 2 cut(s) 99, 259
PshBI ATTAAT 1 cut(s) 225
Psp124BI GAGCTC 1 cut(s) 644
Psp6I CCWGG 2 cut(s) 89, 738
PspFI CCCAGC 1 cut(s) 11
PspGI CCWGG 2 cut(s) 89, 738
PspN4I GGNNCC 1 cut(s) 925
RsaI GTAC 1 cut(s) 697
RsaNI GTAC 1 cut(s) 696
SacI GAGCTC 1 cut(s) 644
SaqAI TTAA 2 cut(s) 225, 672
SatI GCNGC 7 cut(s) 43, 731, 734, 791, 794, 797, 800
Sau3AI GATC 6 cut(s) 33, 250, 649, 712, 874, 880
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 4 cut(s) 91, 740, 836, 837
SduI GDGCHC 3 cut(s) 24, 351, 644
SfaNI GCATC 1 cut(s) 836
SmaI CCCGGG 1 cut(s) 837
SmlI CTYRAG 2 cut(s) 17, 637
SmoI CTYRAG 2 cut(s) 17, 637
Sse9I AATT 8 cut(s) 25, 77, 209, 369, 546, 611, 623, 899
SseBI AGGCCT 1 cut(s) 893
SsiI CCGC 1 cut(s) 517
SspI AATATT 1 cut(s) 460
SspMI CTAG 2 cut(s) 68, 410
SstI GAGCTC 1 cut(s) 644
StuI AGGCCT 1 cut(s) 893
StyD4I CCNGG 4 cut(s) 89, 738, 834, 835
TaaI ACNGT 2 cut(s) 288, 587
TaiI ACGT 1 cut(s) 538
TasI AATT 8 cut(s) 25, 77, 209, 369, 546, 611, 623, 899
TfiI GAWTC 1 cut(s) 821
Tru1I TTAA 2 cut(s) 225, 672
Tru9I TTAA 2 cut(s) 225, 672
TseFI GTSAC 2 cut(s) 183, 587
TseI GCWGC 7 cut(s) 42, 730, 733, 790, 793, 796, 799
Tsp45I GTSAC 2 cut(s) 183, 587
TspDTI ATGAA 3 cut(s) 17, 375, 695
TspMI CCCGGG 1 cut(s) 835
Van91I CCANNNNNTGG 2 cut(s) 111, 328
VspI ATTAAT 1 cut(s) 225
XapI RAATTY 5 cut(s) 77, 209, 546, 623, 899
XceI RCATGY 3 cut(s) 103, 263, 509
XmaI CCCGGG 1 cut(s) 835
XmnI GAANNNNTTC 1 cut(s) 459
XspI CTAG 2 cut(s) 68, 410
Zsp2I ATGCAT 1 cut(s) 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.