Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002930

Physical Location & Seq

Genomic Coordinates Reverse (-)

9407647 .. 9410138

Gene Structure 2492 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G26770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGTCGGATTCCGTCAAAACGACGGTGGATCCGCTTTTGAAAGATTTGGATGGGAAAAAAGAGAGTTTCAGGCGGAACGTTGTGTCTATGGCAGCTGAGTTAAAGCAAGTGAGAGGTCGTTTGGTTTCTCAAGAACAATTCTTTGTTAAAGAAAGCTTTTGTAGAAAAGAAGCAGAGAAGAAAGCTAAGAACATGGAAATGGAGATCTGTAAATTGCAGAAGAAGTTGGAAGATAGAAATTGTGAGCTTGTAGCTTCAACTTCTGCTGCTGAAAAGTTTCTAGAAGAAGTGGACGATCTGAGATCACAGCTAGCTTTAACAAAGGACATTGCAGAAACAAGTGCTGCTTCTGCTCAATCCGCACAGCTTCAATGCTCAGTGCTAACAGAACAACTTGACGACAAAACACGTTCTCTAAGAGAACACGAAGACCGTGTAACTCATCTCGGTCACCAGCTTGATAATCTTCAGAGAGATTTGAAGACAAGAGAATGTTCTCAAAAACAGCTGAGAGAGGAAGTTATGAGAATCGAGCGTGAGATAACTGAAGCTGTTGCAAAGTCTGGGAAAGGCACAGAATGTGAGCTCAGGAAACTTCTTGAAGAGGTTTCTCCAAAGAACTTTGAGAGAATGAACATGTTATTGGCGGTAAAAGACGAAGAGATTGCAAAGTTAAAAGATGATGTGAAGTTAATGTCAGCTCATTGGAAACTCAAAACTAAGGAACTTGAATCTCAGTTGGAGAGACAAAGAAGAGCAGATCAAGAGTTGAAGAAGAAGGTACTGAAACTAGAGTTTTGCCTGCAAGAAGCTCGTAGTCAGACAAGAAAGCTACAGAGGGCGGGGGAGAGACGAGACAAGGCAATCAAAGAGCTAAGTGATCAGATTACTGGAAAACAGTTGAATGAATCGGTTTCAGGGGAGAAACAAAACTTCTGGGATACTTCAGGGTTCAAGATCGTTGTGTCAATGTCGATGTTGATATTAGTTATTATCTCCAAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0012505 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

335

Amino Acids

38.68

Weight (kDa)

8.79

Isoelectric Point (pI)

47.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26770 AT5G26770 AT5G26770 AT5G26770 AT5G26770 AT5G26770
fragaria_vesca	FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410
malus_domestica	MD04G1187100.v1.1 MD12G1200500.v1.1
prunus_persica	Prupe.6G305600_v2.0.a1 Prupe.6G305600_v2.0.a1 Prupe.6G305600_v2.0.a1
pyrus_communis	pycom12g18700
rosa_chinensis	RchiOBHm_Chr3g0458381
rosa_laevigata	RLG00000025164
rosa_multiflora	Rmu_sc0003967.1_g000003
rosa_roxburghii	Rroxscaffold_6G00421120
rosa_rugosa	Rorug03G0026200 Rorug03G0026300 Rorug03G0026400.1 Rorug03G0026500 Rorug03G0026600 Rorug03G0026700 Rorug03G0026800 Rorug03G0026900 Rorug03G0027000
rosa_samantha	Rh3AG087000 Rh3BG089900 Rh3CG090300 Rh3DG090900
rosa_wichuraiana	Rw3G007400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	32, 73, 360, 647, 842
AclI	AACGTT	1 cut(s)	78
AclWI	GGATC	2 cut(s)	23, 36
AcuI	CTGAAG	3 cut(s)	452, 567, 930
AfaI	GTAC	1 cut(s)	783
AflIII	ACRYGT	2 cut(s)	407, 636
AgsI	TTSAA	9 cut(s)	40, 258, 371, 481, 602, 731, 772, 904, 955
AjuI	GAANNNNNNNTTGG	2 cut(s)	626, 658
Alw21I	GWGCWC	1 cut(s)	588
Alw26I	GTCTC	3 cut(s)	739, 844, 849
AlwI	GGATC	2 cut(s)	23, 36
ApeKI	GCWGC	3 cut(s)	92, 266, 344
Asp700I	GAANNNNTTC	1 cut(s)	276
AsuHPI	GGTGA	1 cut(s)	443
AsuNHI	GCTAGC	1 cut(s)	310
BamHI	GGATCC	1 cut(s)	28
BanII	GRGCYC	1 cut(s)	588
BbsI	GAAGAC	2 cut(s)	435, 488
Bbv12I	GWGCWC	1 cut(s)	588
BbvI	GCAGC	3 cut(s)	104, 253, 331
BccI	CCATC	1 cut(s)	44
BcgI	CGANNNNNNTGC	4 cut(s)	647, 681, 794, 828
BciVI	GTATCC	1 cut(s)	934
BclI	TGATCA	1 cut(s)	880
BcoDI	GTCTC	3 cut(s)	739, 844, 849
BfaI	CTAG	3 cut(s)	281, 311, 791
BfmI	CTRYAG	1 cut(s)	833
BfuI	GTATCC	1 cut(s)	934
BglII	AGATCT	1 cut(s)	204
BisI	GCNGC	3 cut(s)	93, 267, 345
BlsI	GCNGC	3 cut(s)	94, 268, 346
BmiI	GGNNCC	1 cut(s)	30
BmtI	GCTAGC	1 cut(s)	314
BpiI	GAAGAC	2 cut(s)	435, 488
Bpu10I	CCTNAGC	1 cut(s)	587
BpuEI	CTTGAG	1 cut(s)	114
Bse1I	ACTGG	1 cut(s)	895
Bse3DI	GCAATG	1 cut(s)	327
BseGI	GGATG	1 cut(s)	55
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	6 cut(s)	87, 290, 390, 500, 601, 749
BseNI	ACTGG	1 cut(s)	895
BseXI	GCAGC	3 cut(s)	104, 253, 331
BsiHKAI	GWGCWC	1 cut(s)	588
BsmAI	GTCTC	3 cut(s)	739, 844, 849
BsmBI	CGTCTC	1 cut(s)	844
Bsp1286I	GDGCHC	1 cut(s)	588
Bsp143I	GATC	7 cut(s)	28, 204, 295, 302, 760, 880, 957
BspACI	CCGC	5 cut(s)	32, 73, 360, 647, 842
BspCNI	CTCAG	6 cut(s)	88, 291, 389, 501, 600, 748
BspLI	GGNNCC	1 cut(s)	30
BspOI	GCTAGC	1 cut(s)	314
BspPI	GGATC	2 cut(s)	23, 36
BspQI	GCTCTTC	1 cut(s)	748
BsrDI	GCAATG	1 cut(s)	327
BsrI	ACTGG	1 cut(s)	895
BssMI	GATC	7 cut(s)	28, 204, 295, 302, 760, 880, 957
Bst4CI	ACNGT	3 cut(s)	25, 434, 900
Bst6I	CTCTTC	3 cut(s)	597, 654, 748
BstC8I	GCNNGC	2 cut(s)	312, 803
BstEII	GGTNACC	1 cut(s)	449
BstF5I	GGATG	1 cut(s)	55
BstKTI	GATC	7 cut(s)	31, 207, 298, 305, 763, 883, 960
BstMAI	GTCTC	3 cut(s)	739, 844, 849
BstMBI	GATC	7 cut(s)	28, 204, 295, 302, 760, 880, 957
BstMWI	GCNNNNNNNGC	2 cut(s)	350, 359
BstNSI	RCATGY	1 cut(s)	640
BstPI	GGTNACC	1 cut(s)	449
BstSFI	CTRYAG	1 cut(s)	833
BstV1I	GCAGC	3 cut(s)	104, 253, 331
BstV2I	GAAGAC	2 cut(s)	435, 488
BstX2I	RGATCY	2 cut(s)	28, 204
BstYI	RGATCY	2 cut(s)	28, 204
BsuI	GTATCC	1 cut(s)	934
BtsCI	GGATG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	384
Cac8I	GCNNGC	2 cut(s)	312, 803
Csp6I	GTAC	1 cut(s)	782
CviAII	CATG	2 cut(s)	193, 637
CviQI	GTAC	1 cut(s)	782
DpnI	GATC	7 cut(s)	30, 206, 297, 304, 762, 882, 959
DpnII	GATC	7 cut(s)	28, 204, 295, 302, 760, 880, 957
Eam1104I	CTCTTC	3 cut(s)	597, 654, 748
EarI	CTCTTC	3 cut(s)	597, 654, 748
EciI	GGCGGA	1 cut(s)	88
Ecl136II	GAGCTC	1 cut(s)	586
Eco24I	GRGCYC	1 cut(s)	588
Eco53kI	GAGCTC	1 cut(s)	586
Eco57I	CTGAAG	3 cut(s)	452, 567, 930
Eco91I	GGTNACC	1 cut(s)	449
EcoICRI	GAGCTC	1 cut(s)	586
EcoO65I	GGTNACC	1 cut(s)	449
EcoT38I	GRGCYC	1 cut(s)	588
Esp3I	CGTCTC	1 cut(s)	844
FaeI	CATG	2 cut(s)	196, 640
FaiI	YATR	4 cut(s)	89, 194, 524, 638
FalI	AAGNNNNNCTT	2 cut(s)	331, 363
FatI	CATG	2 cut(s)	192, 636
FauI	CCCGC	1 cut(s)	835
FbaI	TGATCA	1 cut(s)	880
Fnu4HI	GCNGC	3 cut(s)	93, 267, 345
FokI	GGATG	1 cut(s)	62
FriOI	GRGCYC	1 cut(s)	588
Fsp4HI	GCNGC	3 cut(s)	93, 267, 345
FspBI	CTAG	3 cut(s)	281, 311, 791
GluI	GCNGC	3 cut(s)	93, 267, 345
Hin1II	CATG	2 cut(s)	196, 640
HindIII	AAGCTT	1 cut(s)	154
HinfI	GANTC	4 cut(s)	8, 528, 731, 908
HphI	GGTGA	1 cut(s)	443
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	5 cut(s)	7, 300, 471, 822, 885
Hpy188III	TCNNGA	6 cut(s)	131, 281, 589, 599, 764, 955
Hpy8I	GTNNAC	1 cut(s)	292
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	1 cut(s)	772
HpyCH4III	ACNGT	3 cut(s)	25, 434, 900
HpyCH4IV	ACGT	2 cut(s)	78, 409
HpyCH4V	TGCA	5 cut(s)	217, 332, 557, 668, 805
HpyF10VI	GCNNNNNNNGC	2 cut(s)	350, 359
HpySE526I	ACGT	2 cut(s)	78, 409
Hsp92II	CATG	2 cut(s)	196, 640
Ksp22I	TGATCA	1 cut(s)	880
Kzo9I	GATC	7 cut(s)	28, 204, 295, 302, 760, 880, 957
LguI	GCTCTTC	1 cut(s)	748
LpnPI	CCDG	9 cut(s)	55, 467, 549, 574, 815, 876, 903, 922, 933
Lsp1109I	GCAGC	3 cut(s)	104, 253, 331
MaeI	CTAG	3 cut(s)	281, 311, 791
MaeII	ACGT	2 cut(s)	78, 409
MaeIII	GTNAC	2 cut(s)	436, 449
MalI	GATC	7 cut(s)	30, 206, 297, 304, 762, 882, 959
MboI	GATC	7 cut(s)	28, 204, 295, 302, 760, 880, 957
MflI	RGATCY	2 cut(s)	28, 204
MhlI	GDGCHC	1 cut(s)	588
MluCI	AATT	3 cut(s)	137, 212, 238
MmeI	TCCRAC	2 cut(s)	207, 720
MnlI	CCTC	4 cut(s)	107, 508, 598, 831
MroXI	GAANNNNTTC	1 cut(s)	276
MseI	TTAA	5 cut(s)	101, 147, 317, 674, 692
MslI	CAYNNNNRTG	1 cut(s)	197
MspA1I	CMGCKG	2 cut(s)	95, 508
MwoI	GCNNNNNNNGC	2 cut(s)	350, 359
NdeII	GATC	7 cut(s)	28, 204, 295, 302, 760, 880, 957
NheI	GCTAGC	1 cut(s)	310
NlaIII	CATG	2 cut(s)	196, 640
NlaIV	GGNNCC	1 cut(s)	30
NmuCI	GTSAC	1 cut(s)	449
NspI	RCATGY	1 cut(s)	640
PciI	ACATGT	1 cut(s)	636
PciSI	GCTCTTC	1 cut(s)	748
PdmI	GAANNNNTTC	1 cut(s)	276
PfeI	GAWTC	4 cut(s)	8, 528, 731, 908
PkrI	GCNGC	3 cut(s)	94, 268, 346
PscI	ACATGT	1 cut(s)	636
Psp124BI	GAGCTC	1 cut(s)	588
Psp1406I	AACGTT	1 cut(s)	78
PspEI	GGTNACC	1 cut(s)	449
PspN4I	GGNNCC	1 cut(s)	30
PsuI	RGATCY	2 cut(s)	28, 204
PvuII	CAGCTG	2 cut(s)	95, 508
RsaI	GTAC	1 cut(s)	783
RsaNI	GTAC	1 cut(s)	782
RseI	CAYNNNNRTG	1 cut(s)	197
SacI	GAGCTC	1 cut(s)	588
SapI	GCTCTTC	1 cut(s)	748
SaqAI	TTAA	5 cut(s)	101, 147, 317, 674, 692
SatI	GCNGC	3 cut(s)	93, 267, 345
Sau3AI	GATC	7 cut(s)	28, 204, 295, 302, 760, 880, 957
SduI	GDGCHC	1 cut(s)	588
SfcI	CTRYAG	1 cut(s)	833
SmiMI	CAYNNNNRTG	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	129
SmoI	CTYRAG	1 cut(s)	129
Sse9I	AATT	3 cut(s)	137, 212, 238
SsiI	CCGC	5 cut(s)	32, 73, 360, 647, 842
SspMI	CTAG	3 cut(s)	281, 311, 791
SstI	GAGCTC	1 cut(s)	588
TaaI	ACNGT	3 cut(s)	25, 434, 900
TaiI	ACGT	2 cut(s)	81, 412
TaqI	TCGA	2 cut(s)	531, 974
TaqII	GACCGA	1 cut(s)	437
TasI	AATT	3 cut(s)	137, 212, 238
TfiI	GAWTC	4 cut(s)	8, 528, 731, 908
Tru1I	TTAA	5 cut(s)	101, 147, 317, 674, 692
Tru9I	TTAA	5 cut(s)	101, 147, 317, 674, 692
TscAI	CASTG	1 cut(s)	384
TseFI	GTSAC	1 cut(s)	449
TseI	GCWGC	3 cut(s)	92, 266, 344
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	2 cut(s)	647, 921
TspRI	CASTG	1 cut(s)	384
XbaI	TCTAGA	1 cut(s)	280
XceI	RCATGY	1 cut(s)	640
XmnI	GAANNNNTTC	1 cut(s)	276
XspI	CTAG	3 cut(s)	281, 311, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.