Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002930

Physical Location & Seq

Genomic Coordinates Forward (+)

2084555 .. 2086886

Gene Structure 2332 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0026600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGATATGAACGACGTCGAGCAAATACCCGCGCCGCAGCCGGGTAAGTCATCGCTGTCCTCGGAGTCATCGCCGTGCCTGTCGCTTTCGTCCTCCGAGGAGGAGCTGCAGGACATGCCGCTGGCGCCGCCGAAGATGATGAGCCGGAAGAGGCTGTGCAAGCAGCTGTCCATGTGCGAGACGCCGCGTGACATTGCATGGGAGAAGCGGCGCCGGCAAATTCTGAAGCAGGAGAGGAAGAGGAACGGAAACGGTGACTCCCCCGGCGCCGCCGCCGAACCAGAGGGAGACGACATGAACCTGACCGACGAGGACTTGCATGAGCTGAAAGGGTGTATAGAGCTAGGGTTTGGGTTTAATGAGGAAGAGGGTCAACGGTTGTGCCCCACATTGCCGGCTCTTGACCTTTACTTTGCCGTTAACCGCCAGTTCTCGCCGAGTCCGATCTCCTCGCCGAATAGCAGCCGACATTCCACGTCGTCAATTGGTGGTGCGACGTCGTCGTTTGGTGGACTTTCAGCGTCGTTTGGAAGCCCTAGCCCTAGGAGCGACAGTGATGGATGGAAGATATGCAGCCCAGGTGATAATCCTCAACAGGTGAAGACCAAGTTGAGGCATTGGGCGCAAGCAGTTGCTTGTTCAGTTATGCAATCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0012505 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

219

Amino Acids

23.91

Weight (kDa)

5.32

Isoelectric Point (pI)

89.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1685	PF07939	101 - 157	2.4e-25	Protein of unknown function (DUF1685)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26770 AT5G26770 AT5G26770 AT5G26770 AT5G26770 AT5G26770
fragaria_vesca	FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410
malus_domestica	MD04G1187100.v1.1 MD12G1200500.v1.1
prunus_persica	Prupe.6G305600_v2.0.a1 Prupe.6G305600_v2.0.a1 Prupe.6G305600_v2.0.a1
pyrus_communis	pycom12g18700
rosa_chinensis	RchiOBHm_Chr3g0458381
rosa_laevigata	RLG00000025164
rosa_multiflora	Rmu_sc0003967.1_g000003
rosa_roxburghii	Rroxscaffold_6G00421120
rosa_rugosa	Rorug03G0026200 Rorug03G0026300 Rorug03G0026400.1 Rorug03G0026500 Rorug03G0026600 Rorug03G0026700 Rorug03G0026800 Rorug03G0026900 Rorug03G0027000
rosa_samantha	Rh3AG087000 Rh3BG089900 Rh3CG090300 Rh3DG090900
rosa_wichuraiana	Rw3G007400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	18, 500
AccB1I	GGYRCC	3 cut(s)	124, 210, 266
AccII	CGCG	2 cut(s)	32, 187
AciI	CCGC	9 cut(s)	30, 35, 119, 128, 185, 208, 270, 273, 424
AcsI	RAATTY	1 cut(s)	219
AcuI	CTGAAG	1 cut(s)	245
AcyI	GRCGYC	6 cut(s)	15, 125, 182, 211, 267, 497
AfiI	CCNNNNNNNGG	2 cut(s)	41, 612
AjiI	CACGTC	1 cut(s)	477
AjnI	CCWGG	1 cut(s)	577
AluBI	AGCT	4 cut(s)	106, 166, 325, 343
AluI	AGCT	4 cut(s)	106, 166, 325, 343
Alw26I	GTCTC	2 cut(s)	173, 282
ApeKI	GCWGC	5 cut(s)	37, 106, 163, 462, 573
ApoI	RAATTY	1 cut(s)	219
ArsI	GACNNNNNNTTYG	2 cut(s)	395, 427
AspA2I	CCTAGG	1 cut(s)	542
AspLEI	GCGC	5 cut(s)	34, 127, 213, 269, 625
AsuC2I	CCSGG	2 cut(s)	42, 264
AsuHPI	GGTGA	3 cut(s)	266, 593, 610
AvrII	CCTAGG	1 cut(s)	542
BaeGI	GKGCMC	1 cut(s)	386
BanI	GGYRCC	3 cut(s)	124, 210, 266
BbsI	GAAGAC	1 cut(s)	608
BbvI	GCAGC	5 cut(s)	49, 93, 175, 474, 585
BccI	CCATC	2 cut(s)	551, 555
BceAI	ACGGC	2 cut(s)	58, 401
BciT130I	CCWGG	1 cut(s)	579
BcnI	CCSGG	2 cut(s)	42, 264
BcoDI	GTCTC	2 cut(s)	173, 282
BfaI	CTAG	3 cut(s)	344, 537, 543
BfmI	CTRYAG	1 cut(s)	107
BfoI	RGCGCY	3 cut(s)	128, 214, 270
BlnI	CCTAGG	1 cut(s)	542
Bme1390I	CCNGG	3 cut(s)	42, 264, 579
BmgBI	CACGTC	1 cut(s)	477
BmiI	GGNNCC	3 cut(s)	126, 212, 268
BmrFI	CCNGG	3 cut(s)	42, 264, 579
BpiI	GAAGAC	1 cut(s)	608
BpuMI	CCSGG	2 cut(s)	42, 264
BsaHI	GRCGYC	6 cut(s)	15, 125, 182, 211, 267, 497
BsaJI	CCNNGG	5 cut(s)	60, 96, 262, 542, 577
BsaXI	ACNNNNNCTCC	4 cut(s)	242, 272, 538, 568
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 612
Bse118I	RCCGGY	2 cut(s)	213, 394
Bse1I	ACTGG	1 cut(s)	427
Bse3DI	GCAATG	2 cut(s)	192, 389
BseBI	CCWGG	1 cut(s)	579
BseDI	CCNNGG	5 cut(s)	60, 96, 262, 542, 577
BseGI	GGATG	1 cut(s)	566
BseLI	CCNNNNNNNGG	2 cut(s)	41, 612
BseMI	GCAATG	2 cut(s)	192, 389
BseNI	ACTGG	1 cut(s)	427
BseRI	GAGGAG	3 cut(s)	113, 116, 439
BseSI	GKGCMC	1 cut(s)	386
BseXI	GCAGC	5 cut(s)	49, 93, 175, 474, 585
Bsh1236I	CGCG	2 cut(s)	32, 187
BshNI	GGYRCC	3 cut(s)	124, 210, 266
BsiSI	CCGG	5 cut(s)	41, 145, 214, 264, 395
BslI	CCNNNNNNNGG	2 cut(s)	41, 612
BsmAI	GTCTC	2 cut(s)	173, 282
BsmBI	CGTCTC	2 cut(s)	173, 282
Bsp1286I	GDGCHC	1 cut(s)	386
Bsp143I	GATC	1 cut(s)	444
BspACI	CCGC	9 cut(s)	30, 35, 119, 128, 185, 208, 270, 273, 424
BspFNI	CGCG	2 cut(s)	32, 187
BspLI	GGNNCC	3 cut(s)	126, 212, 268
BspMAI	CTGCAG	1 cut(s)	111
BspT107I	GGYRCC	3 cut(s)	124, 210, 266
BsrDI	GCAATG	2 cut(s)	192, 389
BsrFI	RCCGGY	2 cut(s)	213, 394
BsrI	ACTGG	1 cut(s)	427
BssAI	RCCGGY	2 cut(s)	213, 394
BssECI	CCNNGG	5 cut(s)	60, 96, 262, 542, 577
BssMI	GATC	1 cut(s)	444
BssNI	GRCGYC	6 cut(s)	15, 125, 182, 211, 267, 497
BssT1I	CCWWGG	1 cut(s)	542
Bst2UI	CCWGG	1 cut(s)	579
Bst4CI	ACNGT	3 cut(s)	254, 378, 554
Bst6I	CTCTTC	3 cut(s)	143, 233, 360
BstACI	GRCGYC	6 cut(s)	15, 125, 182, 211, 267, 497
BstAPI	GCANNNNNTGC	1 cut(s)	115
BstC8I	GCNNGC	5 cut(s)	123, 161, 215, 396, 627
BstF5I	GGATG	1 cut(s)	566
BstFNI	CGCG	2 cut(s)	32, 187
BstH2I	RGCGCY	3 cut(s)	128, 214, 270
BstHHI	GCGC	5 cut(s)	34, 127, 213, 269, 625
BstKTI	GATC	1 cut(s)	447
BstMAI	GTCTC	2 cut(s)	173, 282
BstMBI	GATC	1 cut(s)	444
BstMWI	GCNNNNNNNGC	7 cut(s)	115, 124, 127, 160, 214, 546, 622
BstNI	CCWGG	1 cut(s)	579
BstNSI	RCATGY	1 cut(s)	118
BstSCI	CCNGG	3 cut(s)	40, 262, 577
BstSFI	CTRYAG	1 cut(s)	107
BstSLI	GKGCMC	1 cut(s)	386
BstUI	CGCG	2 cut(s)	32, 187
BstV1I	GCAGC	5 cut(s)	49, 93, 175, 474, 585
BstV2I	GAAGAC	1 cut(s)	608
BtgZI	GCGATG	2 cut(s)	36, 54
BtrI	CACGTC	1 cut(s)	477
BtsCI	GGATG	1 cut(s)	566
BtsIMutI	CAGTG	1 cut(s)	559
Cac8I	GCNNGC	5 cut(s)	123, 161, 215, 396, 627
CfoI	GCGC	5 cut(s)	34, 127, 213, 269, 625
Cfr10I	RCCGGY	2 cut(s)	213, 394
CseI	GACGC	2 cut(s)	190, 510
CviAII	CATG	5 cut(s)	115, 172, 198, 295, 320
DinI	GGCGCC	3 cut(s)	126, 212, 268
DpnI	GATC	1 cut(s)	446
DpnII	GATC	1 cut(s)	444
Eam1104I	CTCTTC	3 cut(s)	143, 233, 360
EarI	CTCTTC	3 cut(s)	143, 233, 360
Eco130I	CCWWGG	1 cut(s)	542
Eco57I	CTGAAG	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	577
EcoT14I	CCWWGG	1 cut(s)	542
EgeI	GGCGCC	3 cut(s)	126, 212, 268
EheI	GGCGCC	3 cut(s)	126, 212, 268
ErhI	CCWWGG	1 cut(s)	542
Esp3I	CGTCTC	2 cut(s)	173, 282
FaeI	CATG	5 cut(s)	118, 175, 201, 298, 323
FaiI	YATR	9 cut(s)	8, 116, 173, 199, 296, 321, 338, 571, 647
FatI	CATG	5 cut(s)	114, 171, 197, 294, 319
FauI	CCCGC	1 cut(s)	37
FokI	GGATG	1 cut(s)	573
FspBI	CTAG	3 cut(s)	344, 537, 543
GlaI	GCGC	5 cut(s)	33, 126, 212, 268, 624
HaeII	RGCGCY	3 cut(s)	128, 214, 270
HapII	CCGG	5 cut(s)	41, 145, 214, 264, 395
HgaI	GACGC	2 cut(s)	190, 510
HhaI	GCGC	5 cut(s)	34, 127, 213, 269, 625
Hin1I	GRCGYC	6 cut(s)	15, 125, 182, 211, 267, 497
Hin1II	CATG	5 cut(s)	118, 175, 201, 298, 323
Hin6I	GCGC	5 cut(s)	32, 125, 211, 267, 623
HinP1I	GCGC	5 cut(s)	32, 125, 211, 267, 623
HincII	GTYRAC	2 cut(s)	374, 421
HindII	GTYRAC	2 cut(s)	374, 421
HinfI	GANTC	3 cut(s)	65, 257, 439
HpaI	GTTAAC	1 cut(s)	421
HpaII	CCGG	5 cut(s)	41, 145, 214, 264, 395
HphI	GGTGA	3 cut(s)	266, 593, 610
Hpy166II	GTNNAC	3 cut(s)	374, 421, 512
Hpy188I	TCNGA	4 cut(s)	64, 97, 225, 444
Hpy188III	TCNNGA	1 cut(s)	401
Hpy8I	GTNNAC	3 cut(s)	374, 421, 512
Hpy99I	CGWCG	8 cut(s)	17, 20, 311, 481, 499, 502, 505, 526
HpyCH4III	ACNGT	3 cut(s)	254, 378, 554
HpyCH4IV	ACGT	3 cut(s)	15, 476, 497
HpyCH4V	TGCA	6 cut(s)	109, 159, 197, 319, 573, 649
HpyF10VI	GCNNNNNNNGC	7 cut(s)	115, 124, 127, 160, 214, 546, 622
HpySE526I	ACGT	3 cut(s)	15, 476, 497
Hsp92I	GRCGYC	6 cut(s)	15, 125, 182, 211, 267, 497
Hsp92II	CATG	5 cut(s)	118, 175, 201, 298, 323
HspAI	GCGC	5 cut(s)	32, 125, 211, 267, 623
KasI	GGCGCC	3 cut(s)	124, 210, 266
KroI	GCCGGC	2 cut(s)	213, 394
KroNI	GCCGGC	2 cut(s)	215, 396
KspAI	GTTAAC	1 cut(s)	421
Kzo9I	GATC	1 cut(s)	444
LmnI	GCTCC	2 cut(s)	103, 546
Lsp1109I	GCAGC	5 cut(s)	49, 93, 175, 474, 585
MaeI	CTAG	3 cut(s)	344, 537, 543
MaeII	ACGT	3 cut(s)	15, 476, 497
MaeIII	GTNAC	2 cut(s)	188, 254
MalI	GATC	1 cut(s)	446
MboI	GATC	1 cut(s)	444
MboII	GAAGA	6 cut(s)	145, 160, 250, 377, 577, 613
MfeI	CAATTG	1 cut(s)	483
MhlI	GDGCHC	1 cut(s)	386
MluCI	AATT	2 cut(s)	219, 483
Mly113I	GGCGCC	3 cut(s)	125, 211, 267
MlyI	GAGTC	3 cut(s)	74, 251, 448
MroNI	GCCGGC	2 cut(s)	213, 394
MseI	TTAA	2 cut(s)	357, 420
MslI	CAYNNNNRTG	1 cut(s)	73
MspA1I	CMGCKG	2 cut(s)	121, 166
MspI	CCGG	5 cut(s)	41, 145, 214, 264, 395
MspR9I	CCNGG	3 cut(s)	42, 264, 579
MunI	CAATTG	1 cut(s)	483
MvaI	CCWGG	1 cut(s)	579
MvnI	CGCG	2 cut(s)	32, 187
MwoI	GCNNNNNNNGC	7 cut(s)	115, 124, 127, 160, 214, 546, 622
NaeI	GCCGGC	2 cut(s)	215, 396
NarI	GGCGCC	3 cut(s)	125, 211, 267
NciI	CCSGG	2 cut(s)	42, 264
NdeII	GATC	1 cut(s)	444
NgoMIV	GCCGGC	2 cut(s)	213, 394
NlaIII	CATG	5 cut(s)	118, 175, 201, 298, 323
NlaIV	GGNNCC	3 cut(s)	126, 212, 268
NmeAIII	GCCGAG	1 cut(s)	462
NmuCI	GTSAC	2 cut(s)	188, 254
NspI	RCATGY	1 cut(s)	118
PcsI	WCGNNNNNNNCGW	1 cut(s)	440
PdiI	GCCGGC	2 cut(s)	215, 396
PflFI	GACNNNGTC	1 cut(s)	499
PleI	GAGTC	3 cut(s)	73, 251, 447
PluTI	GGCGCC	3 cut(s)	128, 214, 270
PpsI	GAGTC	3 cut(s)	73, 251, 447
Psp6I	CCWGG	1 cut(s)	577
PspGI	CCWGG	1 cut(s)	577
PspN4I	GGNNCC	3 cut(s)	126, 212, 268
PstI	CTGCAG	1 cut(s)	111
PsyI	GACNNNGTC	1 cut(s)	499
PvuII	CAGCTG	1 cut(s)	166
RseI	CAYNNNNRTG	1 cut(s)	73
SaqAI	TTAA	2 cut(s)	357, 420
Sau3AI	GATC	1 cut(s)	444
SchI	GAGTC	3 cut(s)	74, 251, 448
ScrFI	CCNGG	3 cut(s)	42, 264, 579
SduI	GDGCHC	1 cut(s)	386
SfcI	CTRYAG	1 cut(s)	107
SfoI	GGCGCC	3 cut(s)	126, 212, 268
SmiMI	CAYNNNNRTG	1 cut(s)	73
Sse9I	AATT	2 cut(s)	219, 483
SsiI	CCGC	9 cut(s)	30, 35, 119, 128, 185, 208, 270, 273, 424
SspDI	GGCGCC	3 cut(s)	124, 210, 266
SspMI	CTAG	3 cut(s)	344, 537, 543
StyD4I	CCNGG	3 cut(s)	40, 262, 577
StyI	CCWWGG	1 cut(s)	542
TaaI	ACNGT	3 cut(s)	254, 378, 554
TaiI	ACGT	3 cut(s)	18, 479, 500
TaqI	TCGA	1 cut(s)	18
TaqII	GACCGA	1 cut(s)	320
TasI	AATT	2 cut(s)	219, 483
TauI	GCSGC	7 cut(s)	37, 121, 130, 187, 211, 272, 275
Tru1I	TTAA	2 cut(s)	357, 420
Tru9I	TTAA	2 cut(s)	357, 420
TscAI	CASTG	1 cut(s)	559
TseFI	GTSAC	2 cut(s)	188, 254
TseI	GCWGC	5 cut(s)	37, 106, 163, 462, 573
Tsp45I	GTSAC	2 cut(s)	188, 254
TspDTI	ATGAA	2 cut(s)	23, 311
TspGWI	ACGGA	1 cut(s)	261
TspRI	CASTG	1 cut(s)	559
Tth111I	GACNNNGTC	1 cut(s)	499
XapI	RAATTY	1 cut(s)	219
XceI	RCATGY	1 cut(s)	118
XmaJI	CCTAGG	1 cut(s)	542
XspI	CTAG	3 cut(s)	344, 537, 543
ZraI	GACGTC	2 cut(s)	16, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.