Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002930

Physical Location & Seq

Genomic Coordinates Forward (+)

2099115 .. 2099681

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0026800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTCGCTAAACCCACCCGCGGGTTACGGCACCGTCACCGGCGGTCAAACCTCGACCTCCCAAACCGTGTACCCCACGCGCCGCCCATGGTCCGAGCTTTTCTCCCCCGCCGCCTTCTCCGTCCCCTACAGCTACGCCGACGCCATGAGCCGCGTGAAGCACAACCTCAGCTACTTCCGTCTCAACTACGCCGTGGTCGTGCTCTTCATCGTCTTCCTCAGCCTCCTATGGCACCCGGTCTCCATGATCGTCTTCTTGATCATCCTCATCTACTGGATCTTCGGTTACTTCTCACGCGCCCCCGGCCCCGTCGTCCTTTTCAACCGGAGCTTCGACGACGGCGCCGTCCTCTTCGCCCTCAGCCTCCTCACCGTGGTGGCGCTTGTGCTCACGCGCGTGGGGCTGAACGTGCTGGTCTCTCTGGTCGTCGCCGTGGTCGTTGTGGGCCTCCACGCCGCGTTTCGGGTCACAGAAGACCTGTATTCCGATCCGGAGAGCGCTGCTGATGGTGGGTTGGTTTCCGTTGTTGGATCGGAGCCGTCGCGCCCGGCCCACACCCGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0012505 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

20.52

Weight (kDa)

8.06

Isoelectric Point (pI)

45.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	24 - 163	8.6e-47	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26770 AT5G26770 AT5G26770 AT5G26770 AT5G26770 AT5G26770
fragaria_vesca	FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410
malus_domestica	MD04G1187100.v1.1 MD12G1200500.v1.1
prunus_persica	Prupe.6G305600_v2.0.a1 Prupe.6G305600_v2.0.a1 Prupe.6G305600_v2.0.a1
pyrus_communis	pycom12g18700
rosa_chinensis	RchiOBHm_Chr3g0458381
rosa_laevigata	RLG00000025164
rosa_multiflora	Rmu_sc0003967.1_g000003
rosa_roxburghii	Rroxscaffold_6G00421120
rosa_rugosa	Rorug03G0026200 Rorug03G0026300 Rorug03G0026400.1 Rorug03G0026500 Rorug03G0026600 Rorug03G0026700 Rorug03G0026800 Rorug03G0026900 Rorug03G0027000
rosa_samantha	Rh3AG087000 Rh3BG089900 Rh3CG090300 Rh3DG090900
rosa_wichuraiana	Rw3G007400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	344
AccB1I	GGYRCC	3 cut(s)	29, 231, 341
AccII	CGCG	8 cut(s)	20, 79, 153, 297, 394, 396, 458, 544
AccIII	TCCGGA	1 cut(s)	490
AciI	CCGC	8 cut(s)	18, 20, 42, 82, 108, 111, 151, 456
AclWI	GGATC	3 cut(s)	284, 482, 538
AcyI	GRCGYC	2 cut(s)	141, 342
AfaI	GTAC	1 cut(s)	71
AfeI	AGCGCT	1 cut(s)	499
AfiI	CCNNNNNNNGG	5 cut(s)	19, 20, 373, 462, 558
AgsI	TTSAA	1 cut(s)	322
AleI	CACNNNNGTG	2 cut(s)	374, 395
AluBI	AGCT	4 cut(s)	97, 132, 171, 330
AluI	AGCT	4 cut(s)	97, 132, 171, 330
Alw21I	GWGCWC	2 cut(s)	204, 390
Alw26I	GTCTC	3 cut(s)	185, 244, 421
AlwI	GGATC	3 cut(s)	284, 482, 538
Aor13HI	TCCGGA	1 cut(s)	490
Aor51HI	AGCGCT	1 cut(s)	499
AoxI	GGCC	3 cut(s)	304, 445, 549
ApeKI	GCWGC	1 cut(s)	500
AspLEI	GCGC	7 cut(s)	81, 299, 344, 382, 396, 500, 546
AspS9I	GGNCC	4 cut(s)	90, 305, 445, 550
AsuC2I	CCSGG	4 cut(s)	236, 303, 548, 559
AsuHPI	GGTGA	2 cut(s)	28, 361
AvaII	GGWCC	1 cut(s)	90
BanI	GGYRCC	3 cut(s)	29, 231, 341
BbsI	GAAGAC	3 cut(s)	205, 244, 480
Bbv12I	GWGCWC	2 cut(s)	204, 390
BbvCI	CCTCAGC	3 cut(s)	167, 218, 359
BbvI	GCAGC	1 cut(s)	487
BccI	CCATC	1 cut(s)	500
BceAI	ACGGC	6 cut(s)	43, 176, 329, 355, 416, 523
BclI	TGATCA	1 cut(s)	258
BcnI	CCSGG	4 cut(s)	236, 303, 548, 559
BcoDI	GTCTC	3 cut(s)	185, 244, 421
BfmI	CTRYAG	1 cut(s)	127
BfoI	RGCGCY	3 cut(s)	345, 383, 501
BisI	GCNGC	5 cut(s)	82, 111, 151, 456, 501
BlsI	GCNGC	5 cut(s)	83, 112, 152, 457, 502
Bme1390I	CCNGG	4 cut(s)	236, 303, 548, 559
Bme18I	GGWCC	1 cut(s)	90
BmgT120I	GGNCC	4 cut(s)	90, 305, 445, 550
BmiI	GGNNCC	5 cut(s)	31, 233, 307, 343, 537
BmrFI	CCNGG	4 cut(s)	236, 303, 548, 559
BpiI	GAAGAC	3 cut(s)	205, 244, 480
BplI	GAGNNNNNCTC	2 cut(s)	86, 118
Bpu10I	CCTNAGC	3 cut(s)	167, 218, 359
BpuMI	CCSGG	4 cut(s)	236, 303, 548, 559
BsaHI	GRCGYC	2 cut(s)	141, 342
BsaI	GGTCTC	2 cut(s)	244, 421
BsaJI	CCNNGG	6 cut(s)	18, 86, 192, 301, 372, 432
BsaWI	WCCGGW	2 cut(s)	324, 490
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bsc4I	CCNNNNNNNGG	5 cut(s)	19, 20, 373, 462, 558
Bse118I	RCCGGY	1 cut(s)	38
Bse1I	ACTGG	1 cut(s)	278
BseAI	TCCGGA	1 cut(s)	490
BseDI	CCNNGG	6 cut(s)	18, 86, 192, 301, 372, 432
BseGI	GGATG	1 cut(s)	261
BseLI	CCNNNNNNNGG	5 cut(s)	19, 20, 373, 462, 558
BseMII	CTCAG	3 cut(s)	181, 232, 373
BseNI	ACTGG	1 cut(s)	278
BseRI	GAGGAG	1 cut(s)	356
BseXI	GCAGC	1 cut(s)	487
Bsh1236I	CGCG	8 cut(s)	20, 79, 153, 297, 394, 396, 458, 544
BshFI	GGCC	3 cut(s)	306, 447, 551
BshNI	GGYRCC	3 cut(s)	29, 231, 341
BsiHKAI	GWGCWC	2 cut(s)	204, 390
BsiSI	CCGG	7 cut(s)	39, 236, 303, 325, 491, 548, 559
BslFI	GGGAC	1 cut(s)	107
BslI	CCNNNNNNNGG	5 cut(s)	19, 20, 373, 462, 558
BsmAI	GTCTC	3 cut(s)	185, 244, 421
BsmBI	CGTCTC	1 cut(s)	185
BsmFI	GGGAC	1 cut(s)	107
BsnI	GGCC	3 cut(s)	306, 447, 551
Bso31I	GGTCTC	2 cut(s)	244, 421
Bsp1286I	GDGCHC	2 cut(s)	204, 390
Bsp13I	TCCGGA	1 cut(s)	490
Bsp143I	GATC	5 cut(s)	246, 258, 276, 487, 530
Bsp19I	CCATGG	1 cut(s)	86
BspACI	CCGC	8 cut(s)	18, 20, 42, 82, 108, 111, 151, 456
BspANI	GGCC	3 cut(s)	306, 447, 551
BspCNI	CTCAG	3 cut(s)	180, 231, 372
BspEI	TCCGGA	1 cut(s)	490
BspFNI	CGCG	8 cut(s)	20, 79, 153, 297, 394, 396, 458, 544
BspLI	GGNNCC	5 cut(s)	31, 233, 307, 343, 537
BspPI	GGATC	3 cut(s)	284, 482, 538
BspQI	GCTCTTC	1 cut(s)	209
BspT107I	GGYRCC	3 cut(s)	29, 231, 341
BspTNI	GGTCTC	2 cut(s)	244, 421
BsrFI	RCCGGY	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	278
BssAI	RCCGGY	1 cut(s)	38
BssECI	CCNNGG	6 cut(s)	18, 86, 192, 301, 372, 432
BssMI	GATC	5 cut(s)	246, 258, 276, 487, 530
BssNI	GRCGYC	2 cut(s)	141, 342
BssT1I	CCWWGG	1 cut(s)	86
Bst4CI	ACNGT	3 cut(s)	34, 67, 373
Bst6I	CTCTTC	2 cut(s)	209, 356
BstACI	GRCGYC	2 cut(s)	141, 342
BstDEI	CTNAG	3 cut(s)	167, 218, 359
BstDSI	CCRYGG	5 cut(s)	18, 86, 192, 372, 432
BstF5I	GGATG	1 cut(s)	261
BstFNI	CGCG	8 cut(s)	20, 79, 153, 297, 394, 396, 458, 544
BstH2I	RGCGCY	3 cut(s)	345, 383, 501
BstHHI	GCGC	7 cut(s)	81, 299, 344, 382, 396, 500, 546
BstKTI	GATC	5 cut(s)	249, 261, 279, 490, 533
BstMAI	GTCTC	3 cut(s)	185, 244, 421
BstMBI	GATC	5 cut(s)	246, 258, 276, 487, 530
BstMWI	GCNNNNNNNGC	3 cut(s)	303, 400, 409
BstSCI	CCNGG	4 cut(s)	234, 301, 546, 557
BstSFI	CTRYAG	1 cut(s)	127
BstUI	CGCG	8 cut(s)	20, 79, 153, 297, 394, 396, 458, 544
BstV1I	GCAGC	1 cut(s)	487
BstV2I	GAAGAC	3 cut(s)	205, 244, 480
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
BsuRI	GGCC	3 cut(s)	306, 447, 551
BtgI	CCRYGG	5 cut(s)	18, 86, 192, 372, 432
BtsCI	GGATG	1 cut(s)	261
CfoI	GCGC	7 cut(s)	81, 299, 344, 382, 396, 500, 546
Cfr10I	RCCGGY	1 cut(s)	38
Cfr13I	GGNCC	4 cut(s)	90, 305, 445, 550
Cfr42I	CCGCGG	1 cut(s)	21
CseI	GACGC	1 cut(s)	149
Csp6I	GTAC	1 cut(s)	70
CviAII	CATG	3 cut(s)	87, 145, 244
CviQI	GTAC	1 cut(s)	70
DdeI	CTNAG	3 cut(s)	167, 218, 359
DinI	GGCGCC	1 cut(s)	343
DpnI	GATC	5 cut(s)	248, 260, 278, 489, 532
DpnII	GATC	5 cut(s)	246, 258, 276, 487, 530
DrdI	GACNNNNNNGTC	1 cut(s)	344
DseDI	GACNNNNNNGTC	1 cut(s)	344
Eam1104I	CTCTTC	2 cut(s)	209, 356
EarI	CTCTTC	2 cut(s)	209, 356
Eco130I	CCWWGG	1 cut(s)	86
Eco31I	GGTCTC	2 cut(s)	244, 421
Eco47I	GGWCC	1 cut(s)	90
Eco47III	AGCGCT	1 cut(s)	499
EcoT14I	CCWWGG	1 cut(s)	86
EgeI	GGCGCC	1 cut(s)	343
EheI	GGCGCC	1 cut(s)	343
ErhI	CCWWGG	1 cut(s)	86
Esp3I	CGTCTC	1 cut(s)	185
FaeI	CATG	3 cut(s)	90, 148, 247
FaiI	YATR	4 cut(s)	88, 146, 229, 245
FaqI	GGGAC	1 cut(s)	107
FatI	CATG	3 cut(s)	86, 144, 243
FauI	CCCGC	3 cut(s)	13, 25, 115
FbaI	TGATCA	1 cut(s)	258
Fnu4HI	GCNGC	5 cut(s)	82, 111, 151, 456, 501
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	5 cut(s)	82, 111, 151, 456, 501
GlaI	GCGC	7 cut(s)	80, 298, 343, 381, 395, 499, 545
GluI	GCNGC	5 cut(s)	82, 111, 151, 456, 501
HaeII	RGCGCY	3 cut(s)	345, 383, 501
HaeIII	GGCC	3 cut(s)	306, 447, 551
HapII	CCGG	7 cut(s)	39, 236, 303, 325, 491, 548, 559
HgaI	GACGC	1 cut(s)	149
HhaI	GCGC	7 cut(s)	81, 299, 344, 382, 396, 500, 546
Hin1I	GRCGYC	2 cut(s)	141, 342
Hin1II	CATG	3 cut(s)	90, 148, 247
Hin6I	GCGC	7 cut(s)	79, 297, 342, 380, 394, 498, 544
HinP1I	GCGC	7 cut(s)	79, 297, 342, 380, 394, 498, 544
HpaII	CCGG	7 cut(s)	39, 236, 303, 325, 491, 548, 559
HphI	GGTGA	2 cut(s)	28, 361
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	3 cut(s)	94, 487, 535
Hpy188III	TCNNGA	2 cut(s)	256, 491
Hpy8I	GTNNAC	1 cut(s)	70
Hpy99I	CGWCG	6 cut(s)	143, 314, 338, 341, 431, 544
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	3 cut(s)	34, 67, 373
HpyCH4IV	ACGT	1 cut(s)	408
HpyF10VI	GCNNNNNNNGC	3 cut(s)	303, 400, 409
HpyF3I	CTNAG	3 cut(s)	167, 218, 359
HpySE526I	ACGT	1 cut(s)	408
Hsp92I	GRCGYC	2 cut(s)	141, 342
Hsp92II	CATG	3 cut(s)	90, 148, 247
HspAI	GCGC	7 cut(s)	79, 297, 342, 380, 394, 498, 544
KasI	GGCGCC	1 cut(s)	341
Kpn2I	TCCGGA	1 cut(s)	490
Ksp22I	TGATCA	1 cut(s)	258
KspI	CCGCGG	1 cut(s)	21
Kzo9I	GATC	5 cut(s)	246, 258, 276, 487, 530
LguI	GCTCTTC	1 cut(s)	209
LmnI	GCTCC	2 cut(s)	327, 535
Lsp1109I	GCAGC	1 cut(s)	487
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	4 cut(s)	23, 34, 284, 466
MalI	GATC	5 cut(s)	248, 260, 278, 489, 532
MboI	GATC	5 cut(s)	246, 258, 276, 487, 530
MboII	GAAGA	6 cut(s)	196, 205, 244, 271, 343, 485
MflI	RGATCY	1 cut(s)	276
MhlI	GDGCHC	2 cut(s)	204, 390
Mly113I	GGCGCC	1 cut(s)	342
MmeI	TCCRAC	1 cut(s)	508
MroI	TCCGGA	1 cut(s)	490
MslI	CAYNNNNRTG	2 cut(s)	374, 395
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	7 cut(s)	39, 236, 303, 325, 491, 548, 559
MspR9I	CCNGG	4 cut(s)	236, 303, 548, 559
MvnI	CGCG	8 cut(s)	20, 79, 153, 297, 394, 396, 458, 544
MwoI	GCNNNNNNNGC	3 cut(s)	303, 400, 409
NarI	GGCGCC	1 cut(s)	342
NciI	CCSGG	4 cut(s)	236, 303, 548, 559
NcoI	CCATGG	1 cut(s)	86
NdeII	GATC	5 cut(s)	246, 258, 276, 487, 530
NlaIII	CATG	3 cut(s)	90, 148, 247
NlaIV	GGNNCC	5 cut(s)	31, 233, 307, 343, 537
NmuCI	GTSAC	2 cut(s)	34, 466
OliI	CACNNNNGTG	2 cut(s)	374, 395
PciSI	GCTCTTC	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	3 cut(s)	195, 342, 435
PkrI	GCNGC	5 cut(s)	83, 112, 152, 457, 502
PluTI	GGCGCC	1 cut(s)	345
PspN4I	GGNNCC	5 cut(s)	31, 233, 307, 343, 537
PspPI	GGNCC	4 cut(s)	90, 305, 445, 550
PsuI	RGATCY	1 cut(s)	276
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
RseI	CAYNNNNRTG	2 cut(s)	374, 395
SacII	CCGCGG	1 cut(s)	21
SapI	GCTCTTC	1 cut(s)	209
SatI	GCNGC	5 cut(s)	82, 111, 151, 456, 501
Sau3AI	GATC	5 cut(s)	246, 258, 276, 487, 530
Sau96I	GGNCC	4 cut(s)	90, 305, 445, 550
ScrFI	CCNGG	4 cut(s)	236, 303, 548, 559
SduI	GDGCHC	2 cut(s)	204, 390
SetI	ASST	9 cut(s)	53, 59, 99, 134, 168, 173, 332, 411, 480
SfcI	CTRYAG	1 cut(s)	127
SfoI	GGCGCC	1 cut(s)	343
Sfr303I	CCGCGG	1 cut(s)	21
SgrAI	CRCCGGYG	1 cut(s)	38
SgrBI	CCGCGG	1 cut(s)	21
SinI	GGWCC	1 cut(s)	90
SmiMI	CAYNNNNRTG	2 cut(s)	374, 395
SsiI	CCGC	8 cut(s)	18, 20, 42, 82, 108, 111, 151, 456
SspDI	GGCGCC	1 cut(s)	341
StyD4I	CCNGG	4 cut(s)	234, 301, 546, 557
StyI	CCWWGG	1 cut(s)	86
TaaI	ACNGT	3 cut(s)	34, 67, 373
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	2 cut(s)	53, 333
TauI	GCSGC	4 cut(s)	84, 113, 153, 458
TseFI	GTSAC	2 cut(s)	34, 466
TseI	GCWGC	1 cut(s)	500
Tsp45I	GTSAC	2 cut(s)	34, 466
TspDTI	ATGAA	1 cut(s)	196
TspGWI	ACGGA	3 cut(s)	109, 167, 511
VpaK11BI	GGWCC	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.