Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002930

Physical Location & Seq

Genomic Coordinates Reverse (-)

7013790 .. 7018026

Gene Structure 4237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG090900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGATGTCAGTCTCGGAGAAATCTCGGCCGAGCTCGTCTGCTTCTTCTTCATCTTCAGTTTCAGTCAATGAATTTGATCCATTGCTGAAAGATTTGAATGAGAAGAAGCAGAGCTTTCGCCGGAACGTGGTGTCGTTGGCGTCGGAGCTGAAGCAGGTTCGGAGCCGCTTAGCTTCTCAAGAGCAATCATATGTTAGAGAAACACTCACAAGACAGGAAGTAGAGACAAAAGCTAAAAACATGGAAGAGGAGATTGGTAGATTGCAGAAGAGATTGGAACAAAGAAATGTGCAGCTTGAGGATTCCACATCTAAAACTGAAAAGTGCCTCACAGAGTTGGATGGTCTGAGATCACAACTTGCAGCCACTCAAGCAACTGCAGATACTAGTGCTGCATCAGCTCAATCGGCACAGCTCCAATGTCTAGCACTTGTAAAGGAAATAGATCAAAAGAATTGTTCCTTGAAAGAGCAAGATGAACGTATAATTAGGCTAGGAGAGCAATTAGACACACTACAGAAGGATCTTCAGGCAAGAGAGTCTTCGCAAAAGCAACTGAAAGATGATGTTCTGAGAATTGAGCAGGACATTATGCAGGCTGTTGCACAAGCGGGAGTGAACAAGGATTGTGAGCTGAGGAAAATATTAGATGAAGTTTCTCCAAAGAATATTGAGAGGCTTAATAATCTTTTAGTTATAAAGGATGAAGAAATAGGAAAACTGAAAGATGAAATCAGGATAATGTCCGCTCACTGGACGCTCAAAACTAAGGAGTTAGAAGCACAGTTGGAGAGACAACGGCGAGCTGATCAGGAACTGAAAAAGAGGGTATTGAAATTGGAGTTCTGCCTTCAGGAAGCTCGAGCTCAAACAAGAAAGCTTCAAAGGATGGGGGAGCGAAGAGACAAAGCTCTGAAAGAGCTCAGAGACCAGTTACAACAACGGGGTGCAAGTGGAGCTTCATCTGCCGAAAGACCAAACTTTTGGGAAACCTCTGGTTTCAAAATCGTTGTTTCCATGTCGATGTTCGTCTTGGTTGTCTTCTCAAAGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0012505 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

351

Amino Acids

40.15

Weight (kDa)

9.05

Isoelectric Point (pI)

63.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26770 AT5G26770 AT5G26770 AT5G26770 AT5G26770 AT5G26770
fragaria_vesca	FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410
malus_domestica	MD04G1187100.v1.1 MD12G1200500.v1.1
prunus_persica	Prupe.6G305600_v2.0.a1 Prupe.6G305600_v2.0.a1 Prupe.6G305600_v2.0.a1
pyrus_communis	pycom12g18700
rosa_chinensis	RchiOBHm_Chr3g0458381
rosa_laevigata	RLG00000025164
rosa_multiflora	Rmu_sc0003967.1_g000003
rosa_roxburghii	Rroxscaffold_6G00421120
rosa_rugosa	Rorug03G0026200 Rorug03G0026300 Rorug03G0026400.1 Rorug03G0026500 Rorug03G0026600 Rorug03G0026700 Rorug03G0026800 Rorug03G0026900 Rorug03G0027000
rosa_samantha	Rh3AG087000 Rh3BG089900 Rh3CG090300 Rh3DG090900
rosa_wichuraiana	Rw3G007400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	698
Acc36I	ACCTGC	1 cut(s)	145
AccBSI	CCGCTC	1 cut(s)	749
AciI	CCGC	3 cut(s)	166, 611, 747
AclWI	GGATC	2 cut(s)	71, 531
AcoI	YGGCCR	1 cut(s)	26
AcsI	RAATTY	1 cut(s)	71
AcuI	CTGAAG	4 cut(s)	39, 170, 512, 836
AcyI	GRCGYC	1 cut(s)	140
AfiI	CCNNNNNNNGG	2 cut(s)	127, 753
AgsI	TTSAA	5 cut(s)	97, 466, 835, 884, 1003
AhlI	ACTAGT	1 cut(s)	386
AjuI	GAANNNNNNNTTGG	2 cut(s)	237, 269
Alw21I	GWGCWC	3 cut(s)	35, 868, 924
Alw26I	GTCTC	5 cut(s)	16, 218, 787, 897, 921
AlwI	GGATC	2 cut(s)	71, 531
AlwNI	CAGNNNCTG	1 cut(s)	817
Ama87I	CYCGRG	1 cut(s)	861
AoxI	GGCC	1 cut(s)	26
ApeKI	GCWGC	3 cut(s)	292, 362, 392
ApoI	RAATTY	1 cut(s)	71
ArsI	GACNNNNNNTTYG	2 cut(s)	966, 998
AvaI	CYCGRG	1 cut(s)	861
BanII	GRGCYC	3 cut(s)	35, 868, 924
BbsI	GAAGAC	2 cut(s)	534, 1033
Bbv12I	GWGCWC	3 cut(s)	35, 868, 924
BbvCI	CCTCAGC	1 cut(s)	635
BbvI	GCAGC	3 cut(s)	304, 374, 379
BccI	CCATC	2 cut(s)	335, 883
BceAI	ACGGC	1 cut(s)	815
BcgI	CGANNNNNNTGC	2 cut(s)	98, 132
BclI	TGATCA	1 cut(s)	808
BcoDI	GTCTC	5 cut(s)	16, 218, 787, 897, 921
BcuI	ACTAGT	1 cut(s)	386
BfaI	CTAG	3 cut(s)	387, 425, 494
BfmI	CTRYAG	2 cut(s)	378, 515
BfuAI	ACCTGC	1 cut(s)	145
BisI	GCNGC	4 cut(s)	166, 293, 363, 393
BlpI	GCTNAGC	1 cut(s)	169
BlsI	GCNGC	4 cut(s)	167, 294, 364, 394
BmeT110I	CYCGRG	1 cut(s)	861
BmiI	GGNNCC	1 cut(s)	164
BmsI	GCATC	1 cut(s)	404
BpiI	GAAGAC	2 cut(s)	534, 1033
BplI	GAGNNNNNCTC	2 cut(s)	189, 221
Bpu10I	CCTNAGC	1 cut(s)	635
Bpu1102I	GCTNAGC	1 cut(s)	169
BpuEI	CTTGAG	3 cut(s)	162, 317, 354
BsaHI	GRCGYC	1 cut(s)	140
BsaI	GGTCTC	1 cut(s)	921
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 753
Bse1I	ACTGG	2 cut(s)	758, 931
Bse3DI	GCAATG	1 cut(s)	80
BseGI	GGATG	3 cut(s)	346, 709, 894
BseLI	CCNNNNNNNGG	2 cut(s)	127, 753
BseMI	GCAATG	1 cut(s)	80
BseMII	CTCAG	4 cut(s)	338, 563, 626, 937
BseNI	ACTGG	2 cut(s)	758, 931
BseRI	GAGGAG	1 cut(s)	263
BseX3I	CGGCCG	1 cut(s)	26
BseXI	GCAGC	3 cut(s)	304, 374, 379
BsgI	GTGCAG	1 cut(s)	311
Bsh1285I	CGRYCG	1 cut(s)	29
BshFI	GGCC	1 cut(s)	28
BsiEI	CGRYCG	1 cut(s)	29
BsiHKAI	GWGCWC	3 cut(s)	35, 868, 924
BsiHKCI	CYCGRG	1 cut(s)	861
BsiSI	CCGG	1 cut(s)	121
BslI	CCNNNNNNNGG	2 cut(s)	127, 753
BsmAI	GTCTC	5 cut(s)	16, 218, 787, 897, 921
BsnI	GGCC	1 cut(s)	28
Bso31I	GGTCTC	1 cut(s)	921
BsoBI	CYCGRG	1 cut(s)	861
Bsp1286I	GDGCHC	3 cut(s)	35, 868, 924
Bsp143I	GATC	5 cut(s)	76, 350, 445, 523, 808
Bsp1720I	GCTNAGC	1 cut(s)	169
BspACI	CCGC	3 cut(s)	166, 611, 747
BspANI	GGCC	1 cut(s)	28
BspCNI	CTCAG	4 cut(s)	339, 564, 627, 936
BspLI	GGNNCC	1 cut(s)	164
BspMAI	CTGCAG	1 cut(s)	382
BspMI	ACCTGC	1 cut(s)	145
BspPI	GGATC	2 cut(s)	71, 531
BspTNI	GGTCTC	1 cut(s)	921
BsrBI	CCGCTC	1 cut(s)	749
BsrDI	GCAATG	1 cut(s)	80
BsrI	ACTGG	2 cut(s)	758, 931
BssMI	GATC	5 cut(s)	76, 350, 445, 523, 808
BssNI	GRCGYC	1 cut(s)	140
Bst4CI	ACNGT	1 cut(s)	786
Bst6I	CTCTTC	3 cut(s)	240, 263, 895
BstACI	GRCGYC	1 cut(s)	140
BstC8I	GCNNGC	2 cut(s)	597, 804
BstDEI	CTNAG	6 cut(s)	169, 347, 572, 635, 768, 923
BstF5I	GGATG	3 cut(s)	346, 709, 894
BstKTI	GATC	5 cut(s)	79, 353, 448, 526, 811
BstMAI	GTCTC	5 cut(s)	16, 218, 787, 897, 921
BstMBI	GATC	5 cut(s)	76, 350, 445, 523, 808
BstMCI	CGRYCG	1 cut(s)	29
BstMWI	GCNNNNNNNGC	6 cut(s)	371, 398, 407, 499, 956, 965
BstSFI	CTRYAG	2 cut(s)	378, 515
BstV1I	GCAGC	3 cut(s)	304, 374, 379
BstV2I	GAAGAC	2 cut(s)	534, 1033
BstX2I	RGATCY	1 cut(s)	523
BstXI	CCANNNNNNTGG	1 cut(s)	984
BstYI	RGATCY	1 cut(s)	523
BstZI	CGGCCG	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	28
BtsCI	GGATG	3 cut(s)	346, 709, 894
BtsIMutI	CAGTG	1 cut(s)	751
BveI	ACCTGC	1 cut(s)	145
Cac8I	GCNNGC	2 cut(s)	597, 804
CaiI	CAGNNNCTG	1 cut(s)	817
CseI	GACGC	2 cut(s)	129, 766
CviAII	CATG	2 cut(s)	241, 1018
DdeI	CTNAG	6 cut(s)	169, 347, 572, 635, 768, 923
DpnI	GATC	5 cut(s)	78, 352, 447, 525, 810
DpnII	GATC	5 cut(s)	76, 350, 445, 523, 808
EaeI	YGGCCR	1 cut(s)	26
EagI	CGGCCG	1 cut(s)	26
Eam1104I	CTCTTC	3 cut(s)	240, 263, 895
EarI	CTCTTC	3 cut(s)	240, 263, 895
Ecl136II	GAGCTC	3 cut(s)	33, 866, 922
EclXI	CGGCCG	1 cut(s)	26
Eco24I	GRGCYC	3 cut(s)	35, 868, 924
Eco31I	GGTCTC	1 cut(s)	921
Eco52I	CGGCCG	1 cut(s)	26
Eco53kI	GAGCTC	3 cut(s)	33, 866, 922
Eco57I	CTGAAG	4 cut(s)	39, 170, 512, 836
Eco88I	CYCGRG	1 cut(s)	861
EcoICRI	GAGCTC	3 cut(s)	33, 866, 922
EcoT38I	GRGCYC	3 cut(s)	35, 868, 924
FaeI	CATG	2 cut(s)	244, 1021
FaiI	YATR	7 cut(s)	190, 192, 242, 485, 593, 698, 1019
FalI	AAGNNNNNCTT	6 cut(s)	98, 130, 526, 558, 943, 975
FatI	CATG	2 cut(s)	240, 1017
FauI	CCCGC	1 cut(s)	604
FauNDI	CATATG	1 cut(s)	190
FbaI	TGATCA	1 cut(s)	808
Fnu4HI	GCNGC	4 cut(s)	166, 293, 363, 393
FokI	GGATG	3 cut(s)	353, 716, 901
FriOI	GRGCYC	3 cut(s)	35, 868, 924
Fsp4HI	GCNGC	4 cut(s)	166, 293, 363, 393
FspBI	CTAG	3 cut(s)	387, 425, 494
GluI	GCNGC	4 cut(s)	166, 293, 363, 393
HaeIII	GGCC	1 cut(s)	28
HapII	CCGG	1 cut(s)	121
HgaI	GACGC	2 cut(s)	129, 766
Hin1I	GRCGYC	1 cut(s)	140
Hin1II	CATG	2 cut(s)	244, 1021
HindIII	AAGCTT	1 cut(s)	878
HinfI	GANTC	2 cut(s)	302, 539
HpaII	CCGG	1 cut(s)	121
Hpy166II	GTNNAC	1 cut(s)	619
Hpy188I	TCNGA	7 cut(s)	16, 145, 162, 348, 573, 915, 926
Hpy188III	TCNNGA	4 cut(s)	179, 736, 812, 854
Hpy8I	GTNNAC	1 cut(s)	619
Hpy99I	CGWCG	1 cut(s)	145
HpyAV	CCTTC	2 cut(s)	514, 860
HpyCH4III	ACNGT	1 cut(s)	786
HpyCH4IV	ACGT	2 cut(s)	126, 481
HpyCH4V	TGCA	8 cut(s)	265, 292, 362, 380, 395, 595, 605, 950
HpyF10VI	GCNNNNNNNGC	6 cut(s)	371, 398, 407, 499, 956, 965
HpyF3I	CTNAG	6 cut(s)	169, 347, 572, 635, 768, 923
HpySE526I	ACGT	2 cut(s)	126, 481
Hsp92I	GRCGYC	1 cut(s)	140
Hsp92II	CATG	2 cut(s)	244, 1021
Ksp22I	TGATCA	1 cut(s)	808
Kzo9I	GATC	5 cut(s)	76, 350, 445, 523, 808
LmnI	GCTCC	5 cut(s)	145, 162, 420, 895, 956
Lsp1109I	GCAGC	3 cut(s)	304, 374, 379
LweI	GCATC	1 cut(s)	404
MaeI	CTAG	3 cut(s)	387, 425, 494
MaeII	ACGT	2 cut(s)	126, 481
MaeIII	GTNAC	1 cut(s)	933
MalI	GATC	5 cut(s)	78, 352, 447, 525, 810
MbiI	CCGCTC	1 cut(s)	749
MboI	GATC	5 cut(s)	76, 350, 445, 523, 808
MflI	RGATCY	1 cut(s)	523
MhlI	GDGCHC	3 cut(s)	35, 868, 924
MluCI	AATT	6 cut(s)	71, 454, 486, 503, 576, 836
MlyI	GAGTC	1 cut(s)	548
MmeI	TCCRAC	3 cut(s)	123, 318, 768
MnlI	CCTC	7 cut(s)	241, 292, 338, 630, 669, 819, 1003
MseI	TTAA	1 cut(s)	681
MslI	CAYNNNNRTG	1 cut(s)	1022
MspI	CCGG	1 cut(s)	121
MwoI	GCNNNNNNNGC	6 cut(s)	371, 398, 407, 499, 956, 965
NdeI	CATATG	1 cut(s)	190
NdeII	GATC	5 cut(s)	76, 350, 445, 523, 808
NlaIII	CATG	2 cut(s)	244, 1021
NlaIV	GGNNCC	1 cut(s)	164
NmeAIII	GCCGAG	2 cut(s)	4, 54
PaeR7I	CTCGAG	1 cut(s)	861
PfeI	GAWTC	1 cut(s)	302
PkrI	GCNGC	4 cut(s)	167, 294, 364, 394
PleI	GAGTC	1 cut(s)	547
PpsI	GAGTC	1 cut(s)	547
PsiI	TTATAA	1 cut(s)	698
Psp124BI	GAGCTC	3 cut(s)	35, 868, 924
PspN4I	GGNNCC	1 cut(s)	164
PspXI	VCTCGAGB	1 cut(s)	861
PstI	CTGCAG	1 cut(s)	382
PstNI	CAGNNNCTG	1 cut(s)	817
PsuI	RGATCY	1 cut(s)	523
RseI	CAYNNNNRTG	1 cut(s)	1022
SacI	GAGCTC	3 cut(s)	35, 868, 924
SaqAI	TTAA	1 cut(s)	681
SatI	GCNGC	4 cut(s)	166, 293, 363, 393
Sau3AI	GATC	5 cut(s)	76, 350, 445, 523, 808
SchI	GAGTC	1 cut(s)	548
SduI	GDGCHC	3 cut(s)	35, 868, 924
SfaNI	GCATC	1 cut(s)	404
SfcI	CTRYAG	2 cut(s)	378, 515
Sfr274I	CTCGAG	1 cut(s)	861
SlaI	CTCGAG	1 cut(s)	861
SmiMI	CAYNNNNRTG	1 cut(s)	1022
SmlI	CTYRAG	4 cut(s)	177, 296, 369, 861
SmoI	CTYRAG	4 cut(s)	177, 296, 369, 861
SpeI	ACTAGT	1 cut(s)	386
Sse9I	AATT	6 cut(s)	71, 454, 486, 503, 576, 836
SsiI	CCGC	3 cut(s)	166, 611, 747
SspI	AATATT	2 cut(s)	645, 670
SspMI	CTAG	3 cut(s)	387, 425, 494
SstI	GAGCTC	3 cut(s)	35, 868, 924
TaaI	ACNGT	1 cut(s)	786
TaiI	ACGT	2 cut(s)	129, 484
TaqI	TCGA	2 cut(s)	862, 1022
TasI	AATT	6 cut(s)	71, 454, 486, 503, 576, 836
TauI	GCSGC	1 cut(s)	168
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	1 cut(s)	681
Tru9I	TTAA	1 cut(s)	681
TscAI	CASTG	1 cut(s)	758
TseI	GCWGC	3 cut(s)	292, 362, 392
TspDTI	ATGAA	7 cut(s)	39, 84, 492, 666, 720, 744, 951
TspRI	CASTG	1 cut(s)	758
XapI	RAATTY	1 cut(s)	71
XhoI	CTCGAG	1 cut(s)	861
XspI	CTAG	3 cut(s)	387, 425, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.