Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002930

Physical Location & Seq

Genomic Coordinates Forward (+)

20819714 .. 20822556

Gene Structure 2843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g18700.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGCGTCGATTTCGGAGAAATCACTGCCTTTGTCACCTTCCTCGTCTTCCTCATCACTGTCATCGATGTCGGTCCACGAATTTGATCCGTTGCTAAAAGATTTGGATGAGAGGAAGCAGAGTTTTCGCCGGAATGTGGTGTCGTTGGCATCGGAGTTAAAGGATGTCCGGAGCCGGTTAGCTTCTCAGGAGCGATCATTTGTTAAAGAAACCCTCACAAGACAGGCATCAGAGACAAGGGCTAAAAACTTGGAAGAGGAGATTAGCGTAATGCAGAAGAGATTGCAACAGAGAAATCAGCAGTTTGAGGCCTCAGCATCTACGGCTGAGAAGTACCTTACGGAAGTGGATGGTCTGAGATCGCAGCTTTCAGCCACTCAAGCAACTGCCGATATTAGTGCTGCATCAGCTCAATCGGCACAGCTTCAGTGTTTAGCACTTTTGAAGGAAATAGATGAAAAGAACTGCTCGTTAAAAGAGCAAGATGATCGTGTAATTAGACTAGGAGAGCAATTAGAAAGTCTGCAGAAGGATCTTAAGGCAAGAGAGTTTTCCCAGAAGCAACTGAAAGATGAAGTTTTGAGAGTTGAGAATGACATTATGCAAGCTGTAGCGAAAGCAGGGTTGAACAAGGATTGCGAGCTGAGGAAATTATTAGATGAGGTTTCTCCGAAGAATATTGAGAAGATTAATAAGCTTTTAGTTGTTAAGGATGAAGAAATAGCAAAACTGAAAGATGAAATCAGGGTAATGTCAGCTCATTGGAAGCTCAAAACTAAGGAGTTTGAATCACAGTTGGAGAAACAACGGCGAGTTGACCAGGAACTGAAAAAGAGGGTATTGAAATTAGAGTTTTGTCTCCAGGAAGCTCGTGCTCAAACACGAAAGCTTCAAAGGATGGGTGAACGAAGAGACAAGGCTCTGAAAGAGCTCAGAGATCAGTTACAACGGGGTGGCGGTGGAGCTGCAGCTGCTGAAAGACACAATTTTTGGGAAACCTCCGGTTTCAAAATCATGATGTCTATGTCCATGTTAGTCTTGGTGGCGTTTGCGAAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0012505 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

354

Amino Acids

40.31

Weight (kDa)

9.24

Isoelectric Point (pI)

60.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26770 AT5G26770 AT5G26770 AT5G26770 AT5G26770 AT5G26770
fragaria_vesca	FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410
malus_domestica	MD04G1187100.v1.1 MD12G1200500.v1.1
prunus_persica	Prupe.6G305600_v2.0.a1 Prupe.6G305600_v2.0.a1 Prupe.6G305600_v2.0.a1
pyrus_communis	pycom12g18700
rosa_chinensis	RchiOBHm_Chr3g0458381
rosa_laevigata	RLG00000025164
rosa_multiflora	Rmu_sc0003967.1_g000003
rosa_roxburghii	Rroxscaffold_6G00421120
rosa_rugosa	Rorug03G0026200 Rorug03G0026300 Rorug03G0026400.1 Rorug03G0026500 Rorug03G0026600 Rorug03G0026700 Rorug03G0026800 Rorug03G0026900 Rorug03G0027000
rosa_samantha	Rh3AG087000 Rh3BG089900 Rh3CG090300 Rh3DG090900
rosa_wichuraiana	Rw3G007400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	168
AciI	CCGC	1 cut(s)	957
AclWI	GGATC	2 cut(s)	80, 540
AcsI	RAATTY	1 cut(s)	80
AcuI	CTGAAG	1 cut(s)	410
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	1 cut(s)	136
AflII	CTTAAG	1 cut(s)	536
AgsI	TTSAA	6 cut(s)	445, 628, 788, 844, 893, 1009
AjnI	CCWGG	2 cut(s)	819, 861
Alw21I	GWGCWC	2 cut(s)	877, 933
Alw26I	GTCTC	3 cut(s)	227, 863, 906
AlwI	GGATC	2 cut(s)	80, 540
AlwNI	CAGNNNCTG	2 cut(s)	826, 974
Aor13HI	TCCGGA	1 cut(s)	168
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	5 cut(s)	364, 401, 965, 968, 971
ApoI	RAATTY	1 cut(s)	80
ArsI	GACNNNNNNTTYG	2 cut(s)	972, 1004
AseI	ATTAAT	1 cut(s)	690
AspS9I	GGNCC	1 cut(s)	73
AsuHPI	GGTGA	2 cut(s)	27, 914
AvaII	GGWCC	1 cut(s)	73
BanII	GRGCYC	1 cut(s)	933
BauI	CACGAG	1 cut(s)	870
BbsI	GAAGAC	1 cut(s)	39
Bbv12I	GWGCWC	2 cut(s)	877, 933
BbvCI	CCTCAGC	2 cut(s)	313, 644
BbvI	GCAGC	5 cut(s)	376, 388, 952, 958, 980
BccI	CCATC	2 cut(s)	344, 892
BceAI	ACGGC	2 cut(s)	339, 824
BcgI	CGANNNNNNTGC	6 cut(s)	107, 141, 380, 414, 470, 504
BciT130I	CCWGG	2 cut(s)	821, 863
BcoDI	GTCTC	3 cut(s)	227, 863, 906
BfaI	CTAG	1 cut(s)	503
BfmI	CTRYAG	3 cut(s)	524, 609, 966
BfrI	CTTAAG	1 cut(s)	536
BisI	GCNGC	5 cut(s)	365, 402, 966, 969, 972
BlsI	GCNGC	5 cut(s)	366, 403, 967, 970, 973
Bme1390I	CCNGG	2 cut(s)	821, 863
Bme18I	GGWCC	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	1 cut(s)	173
BmrFI	CCNGG	2 cut(s)	821, 863
BmsI	GCATC	4 cut(s)	158, 236, 326, 413
BpiI	GAAGAC	1 cut(s)	39
BpmI	CTGGAG	1 cut(s)	845
Bpu10I	CCTNAGC	2 cut(s)	313, 644
BpuEI	CTTGAG	1 cut(s)	363
Bsa29I	ATCGAT	1 cut(s)	65
BsaHI	GRCGYC	1 cut(s)	5
BsaWI	WCCGGW	2 cut(s)	168, 1001
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse118I	RCCGGY	1 cut(s)	174
BseAI	TCCGGA	1 cut(s)	168
BseBI	CCWGG	2 cut(s)	821, 863
BseCI	ATCGAT	1 cut(s)	65
BseGI	GGATG	5 cut(s)	112, 169, 355, 718, 903
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMII	CTCAG	6 cut(s)	200, 318, 327, 347, 635, 946
BseRI	GAGGAG	1 cut(s)	272
BseXI	GCAGC	5 cut(s)	376, 388, 952, 958, 980
BshFI	GGCC	1 cut(s)	311
BshVI	ATCGAT	1 cut(s)	65
BsiHKAI	GWGCWC	2 cut(s)	877, 933
BsiSI	CCGG	4 cut(s)	130, 169, 175, 1002
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmAI	GTCTC	3 cut(s)	227, 863, 906
BsnI	GGCC	1 cut(s)	311
Bsp1286I	GDGCHC	2 cut(s)	877, 933
Bsp13I	TCCGGA	1 cut(s)	168
Bsp143I	GATC	6 cut(s)	85, 194, 359, 487, 532, 937
BspACI	CCGC	1 cut(s)	957
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	6 cut(s)	199, 319, 326, 348, 636, 945
BspDI	ATCGAT	1 cut(s)	65
BspEI	TCCGGA	1 cut(s)	168
BspHI	TCATGA	1 cut(s)	1014
BspLI	GGNNCC	1 cut(s)	173
BspMAI	CTGCAG	2 cut(s)	528, 970
BspPI	GGATC	2 cut(s)	80, 540
BspTI	CTTAAG	1 cut(s)	536
BsrFI	RCCGGY	1 cut(s)	174
BssAI	RCCGGY	1 cut(s)	174
BssMI	GATC	6 cut(s)	85, 194, 359, 487, 532, 937
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	870
Bst2BI	CACGAG	1 cut(s)	870
Bst2UI	CCWGG	2 cut(s)	821, 863
Bst4CI	ACNGT	2 cut(s)	60, 795
Bst6I	CTCTTC	4 cut(s)	249, 272, 904, 1049
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	536
BstC8I	GCNNGC	2 cut(s)	606, 641
BstDEI	CTNAG	7 cut(s)	186, 313, 327, 356, 644, 777, 932
BstF5I	GGATG	5 cut(s)	112, 169, 355, 718, 903
BstKTI	GATC	6 cut(s)	88, 197, 362, 490, 535, 940
BstMAI	GTCTC	3 cut(s)	227, 863, 906
BstMBI	GATC	6 cut(s)	85, 194, 359, 487, 532, 937
BstMWI	GCNNNNNNNGC	5 cut(s)	323, 380, 407, 416, 971
BstNI	CCWGG	2 cut(s)	821, 863
BstSCI	CCNGG	2 cut(s)	819, 861
BstSFI	CTRYAG	3 cut(s)	524, 609, 966
BstV1I	GCAGC	5 cut(s)	376, 388, 952, 958, 980
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	1 cut(s)	532
BstYI	RGATCY	1 cut(s)	532
Bsu15I	ATCGAT	1 cut(s)	65
BsuRI	GGCC	1 cut(s)	311
BsuTUI	ATCGAT	1 cut(s)	65
BtsCI	GGATG	5 cut(s)	112, 169, 355, 718, 903
BtsI	GCAGTG	1 cut(s)	23
BtsIMutI	CAGTG	3 cut(s)	23, 56, 434
Cac8I	GCNNGC	2 cut(s)	606, 641
CaiI	CAGNNNCTG	2 cut(s)	826, 974
CciI	TCATGA	1 cut(s)	1014
Cfr10I	RCCGGY	1 cut(s)	174
Cfr13I	GGNCC	1 cut(s)	73
ClaI	ATCGAT	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	2 cut(s)	1015, 1030
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	7 cut(s)	186, 313, 327, 356, 644, 777, 932
DpnI	GATC	6 cut(s)	87, 196, 361, 489, 534, 939
DpnII	GATC	6 cut(s)	85, 194, 359, 487, 532, 937
Eam1104I	CTCTTC	4 cut(s)	249, 272, 904, 1049
EarI	CTCTTC	4 cut(s)	249, 272, 904, 1049
Ecl136II	GAGCTC	1 cut(s)	931
Eco147I	AGGCCT	1 cut(s)	311
Eco24I	GRGCYC	1 cut(s)	933
Eco47I	GGWCC	1 cut(s)	73
Eco53kI	GAGCTC	1 cut(s)	931
Eco57I	CTGAAG	1 cut(s)	410
EcoICRI	GAGCTC	1 cut(s)	931
EcoRII	CCWGG	2 cut(s)	819, 861
EcoT38I	GRGCYC	1 cut(s)	933
FaeI	CATG	2 cut(s)	1018, 1033
FaiI	YATR	4 cut(s)	602, 1016, 1025, 1031
FatI	CATG	2 cut(s)	1014, 1029
Fnu4HI	GCNGC	5 cut(s)	365, 402, 966, 969, 972
FokI	GGATG	5 cut(s)	119, 176, 362, 725, 910
FriOI	GRGCYC	1 cut(s)	933
Fsp4HI	GCNGC	5 cut(s)	365, 402, 966, 969, 972
FspBI	CTAG	1 cut(s)	503
GluI	GCNGC	5 cut(s)	365, 402, 966, 969, 972
GsuI	CTGGAG	1 cut(s)	845
HaeIII	GGCC	1 cut(s)	311
HapII	CCGG	4 cut(s)	130, 169, 175, 1002
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	1018, 1033
HincII	GTYRAC	1 cut(s)	817
HindII	GTYRAC	1 cut(s)	817
HindIII	AAGCTT	2 cut(s)	695, 887
HinfI	GANTC	1 cut(s)	788
HpaII	CCGG	4 cut(s)	130, 169, 175, 1002
HphI	GGTGA	2 cut(s)	27, 914
Hpy166II	GTNNAC	3 cut(s)	76, 817, 905
Hpy188I	TCNGA	7 cut(s)	16, 154, 232, 357, 672, 924, 935
Hpy188III	TCNNGA	3 cut(s)	169, 188, 1015
Hpy8I	GTNNAC	3 cut(s)	76, 817, 905
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	48, 439, 523
HpyCH4III	ACNGT	2 cut(s)	60, 795
HpyCH4V	TGCA	6 cut(s)	274, 286, 404, 526, 604, 968
HpyF10VI	GCNNNNNNNGC	5 cut(s)	323, 380, 407, 416, 971
HpyF3I	CTNAG	7 cut(s)	186, 313, 327, 356, 644, 777, 932
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	1018, 1033
Kpn2I	TCCGGA	1 cut(s)	168
Kzo9I	GATC	6 cut(s)	85, 194, 359, 487, 532, 937
LmnI	GCTCC	3 cut(s)	171, 190, 962
Lsp1109I	GCAGC	5 cut(s)	376, 388, 952, 958, 980
LweI	GCATC	4 cut(s)	158, 236, 326, 413
MaeI	CTAG	1 cut(s)	503
MaeIII	GTNAC	2 cut(s)	33, 942
MalI	GATC	6 cut(s)	87, 196, 361, 489, 534, 939
MboI	GATC	6 cut(s)	85, 194, 359, 487, 532, 937
MboII	GAAGA	7 cut(s)	39, 266, 289, 685, 697, 728, 921
MflI	RGATCY	1 cut(s)	532
MhlI	GDGCHC	2 cut(s)	877, 933
MluCI	AATT	6 cut(s)	80, 495, 512, 650, 845, 985
MmeI	TCCRAC	1 cut(s)	777
MroI	TCCGGA	1 cut(s)	168
MseI	TTAA	6 cut(s)	158, 204, 473, 537, 690, 708
MspA1I	CMGCKG	1 cut(s)	971
MspCI	CTTAAG	1 cut(s)	536
MspI	CCGG	4 cut(s)	130, 169, 175, 1002
MspR9I	CCNGG	2 cut(s)	821, 863
MvaI	CCWGG	2 cut(s)	821, 863
MwoI	GCNNNNNNNGC	5 cut(s)	323, 380, 407, 416, 971
NdeII	GATC	6 cut(s)	85, 194, 359, 487, 532, 937
NlaIII	CATG	2 cut(s)	1018, 1033
NlaIV	GGNNCC	1 cut(s)	173
NmuCI	GTSAC	1 cut(s)	33
PagI	TCATGA	1 cut(s)	1014
PceI	AGGCCT	1 cut(s)	311
PfeI	GAWTC	1 cut(s)	788
PfoI	TCCNGGA	1 cut(s)	861
PkrI	GCNGC	5 cut(s)	366, 403, 967, 970, 973
PshBI	ATTAAT	1 cut(s)	690
Psp124BI	GAGCTC	1 cut(s)	933
Psp6I	CCWGG	2 cut(s)	819, 861
PspGI	CCWGG	2 cut(s)	819, 861
PspN4I	GGNNCC	1 cut(s)	173
PspPI	GGNCC	1 cut(s)	73
PstI	CTGCAG	2 cut(s)	528, 970
PstNI	CAGNNNCTG	2 cut(s)	826, 974
PsuI	RGATCY	1 cut(s)	532
PvuII	CAGCTG	1 cut(s)	971
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
SacI	GAGCTC	1 cut(s)	933
SaqAI	TTAA	6 cut(s)	158, 204, 473, 537, 690, 708
SatI	GCNGC	5 cut(s)	365, 402, 966, 969, 972
Sau3AI	GATC	6 cut(s)	85, 194, 359, 487, 532, 937
Sau96I	GGNCC	1 cut(s)	73
ScrFI	CCNGG	2 cut(s)	821, 863
SduI	GDGCHC	2 cut(s)	877, 933
SfaNI	GCATC	4 cut(s)	158, 236, 326, 413
SfcI	CTRYAG	3 cut(s)	524, 609, 966
SinI	GGWCC	1 cut(s)	73
SmlI	CTYRAG	2 cut(s)	378, 536
SmoI	CTYRAG	2 cut(s)	378, 536
Sse9I	AATT	6 cut(s)	80, 495, 512, 650, 845, 985
SseBI	AGGCCT	1 cut(s)	311
SsiI	CCGC	1 cut(s)	957
SspI	AATATT	1 cut(s)	679
SspMI	CTAG	1 cut(s)	503
SstI	GAGCTC	1 cut(s)	933
StuI	AGGCCT	1 cut(s)	311
StyD4I	CCNGG	2 cut(s)	819, 861
TaaI	ACNGT	2 cut(s)	60, 795
TaqI	TCGA	2 cut(s)	8, 65
TaqII	GACCGA	1 cut(s)	61
TasI	AATT	6 cut(s)	80, 495, 512, 650, 845, 985
TfiI	GAWTC	1 cut(s)	788
Tru1I	TTAA	6 cut(s)	158, 204, 473, 537, 690, 708
Tru9I	TTAA	6 cut(s)	158, 204, 473, 537, 690, 708
TscAI	CASTG	3 cut(s)	30, 63, 434
TseFI	GTSAC	1 cut(s)	33
TseI	GCWGC	5 cut(s)	364, 401, 965, 968, 971
Tsp45I	GTSAC	1 cut(s)	33
TspDTI	ATGAA	4 cut(s)	471, 588, 729, 753
TspGWI	ACGGA	2 cut(s)	78, 356
TspRI	CASTG	3 cut(s)	30, 63, 434
Vha464I	CTTAAG	1 cut(s)	536
VpaK11BI	GGWCC	1 cut(s)	73
VspI	ATTAAT	1 cut(s)	690
XapI	RAATTY	1 cut(s)	80
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1036
XspI	CTAG	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.