Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002930

Physical Location & Seq

Genomic Coordinates Reverse (-)

2104599 .. 2104889

Gene Structure 291 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0027000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGTGCCCATTGAAGATGACCCGGATTTGGGGAATCAGCTGTGTTACAGGACCAAGACTAATCTCAAGGGACCAATATTGACGGTGCATTTTGAGGGGGGTGCTAATATAAAGTTGACACCAACACAAACATTTATTCCACCAAAAGATGAGGTTTTCTGCTTTGCAATGATAGGTGATAACAGTGGTGTTAACATTTATGGAAACTTTGCTCAGACAAATTTCTTGATTGGTATTGACCTTGAAACAAAGGTGGTTTCATTCAAGCCAAATGATTGCACAAAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0012505 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

96

Amino Acids

10.6

Weight (kDa)

4.75

Isoelectric Point (pI)

14.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_C	PF14541	11 - 89	6.3e-12	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26770 AT5G26770 AT5G26770 AT5G26770 AT5G26770 AT5G26770
fragaria_vesca	FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410 FvH4_6g08410
malus_domestica	MD04G1187100.v1.1 MD12G1200500.v1.1
prunus_persica	Prupe.6G305600_v2.0.a1 Prupe.6G305600_v2.0.a1 Prupe.6G305600_v2.0.a1
pyrus_communis	pycom12g18700
rosa_chinensis	RchiOBHm_Chr3g0458381
rosa_laevigata	RLG00000025164
rosa_multiflora	Rmu_sc0003967.1_g000003
rosa_roxburghii	Rroxscaffold_6G00421120
rosa_rugosa	Rorug03G0026200 Rorug03G0026300 Rorug03G0026400.1 Rorug03G0026500 Rorug03G0026600 Rorug03G0026700 Rorug03G0026800 Rorug03G0026900 Rorug03G0027000
rosa_samantha	Rh3AG087000 Rh3BG089900 Rh3CG090300 Rh3DG090900
rosa_wichuraiana	Rw3G007400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AcsI	RAATTY	1 cut(s)	220
AfiI	CCNNNNNNNGG	2 cut(s)	28, 29
AgsI	TTSAA	3 cut(s)	14, 245, 265
AluBI	AGCT	1 cut(s)	40
AluI	AGCT	1 cut(s)	40
ApoI	RAATTY	1 cut(s)	220
AspS9I	GGNCC	2 cut(s)	51, 71
AsuC2I	CCSGG	1 cut(s)	23
AsuHPI	GGTGA	1 cut(s)	188
AvaII	GGWCC	2 cut(s)	51, 71
BaeGI	GKGCMC	1 cut(s)	9
BanI	GGYRCC	1 cut(s)	4
BcnI	CCSGG	1 cut(s)	23
Bme1390I	CCNGG	1 cut(s)	23
Bme18I	GGWCC	2 cut(s)	51, 71
BmgT120I	GGNCC	2 cut(s)	51, 71
BmiI	GGNNCC	2 cut(s)	6, 72
BmrFI	CCNGG	1 cut(s)	23
BpuEI	CTTGAG	1 cut(s)	50
BpuMI	CCSGG	1 cut(s)	23
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 29
Bse3DI	GCAATG	1 cut(s)	174
BseLI	CCNNNNNNNGG	2 cut(s)	28, 29
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	1 cut(s)	227
BseSI	GKGCMC	1 cut(s)	9
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	1 cut(s)	23
BslFI	GGGAC	1 cut(s)	84
BslI	CCNNNNNNNGG	2 cut(s)	28, 29
BsmFI	GGGAC	1 cut(s)	84
Bsp1286I	GDGCHC	1 cut(s)	9
BspCNI	CTCAG	1 cut(s)	226
BspLI	GGNNCC	2 cut(s)	6, 72
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	174
Bst4CI	ACNGT	2 cut(s)	85, 185
BstDEI	CTNAG	1 cut(s)	213
BstSCI	CCNGG	1 cut(s)	21
BstSLI	GKGCMC	1 cut(s)	9
BtsIMutI	CAGTG	1 cut(s)	190
Cfr13I	GGNCC	2 cut(s)	51, 71
CviJI	RGCY	2 cut(s)	40, 268
CviKI_1	RGCY	2 cut(s)	40, 268
DdeI	CTNAG	1 cut(s)	213
Eco47I	GGWCC	2 cut(s)	51, 71
FaiI	YATR	2 cut(s)	110, 201
FaqI	GGGAC	1 cut(s)	84
HapII	CCGG	1 cut(s)	23
HincII	GTYRAC	2 cut(s)	117, 193
HindII	GTYRAC	2 cut(s)	117, 193
HinfI	GANTC	1 cut(s)	34
HpaI	GTTAAC	1 cut(s)	193
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	2 cut(s)	117, 193
Hpy188I	TCNGA	1 cut(s)	216
Hpy188III	TCNNGA	1 cut(s)	226
Hpy8I	GTNNAC	2 cut(s)	117, 193
HpyCH4III	ACNGT	2 cut(s)	85, 185
HpyCH4V	TGCA	3 cut(s)	88, 167, 279
HpyF3I	CTNAG	1 cut(s)	213
KspAI	GTTAAC	1 cut(s)	193
LpnPI	CCDG	2 cut(s)	34, 36
MaeIII	GTNAC	1 cut(s)	44
MboII	GAAGA	1 cut(s)	26
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	1 cut(s)	220
MnlI	CCTC	2 cut(s)	88, 145
MseI	TTAA	2 cut(s)	192, 289
MspA1I	CMGCKG	1 cut(s)	40
MspI	CCGG	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	23
NciI	CCSGG	1 cut(s)	23
NlaIV	GGNNCC	2 cut(s)	6, 72
PfeI	GAWTC	1 cut(s)	34
PspN4I	GGNNCC	2 cut(s)	6, 72
PspPI	GGNCC	2 cut(s)	51, 71
PvuII	CAGCTG	1 cut(s)	40
SaqAI	TTAA	2 cut(s)	192, 289
Sau96I	GGNCC	2 cut(s)	51, 71
ScrFI	CCNGG	1 cut(s)	23
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	5 cut(s)	42, 156, 178, 243, 255
SgeI	CNNG	8 cut(s)	34, 35, 61, 67, 79, 238, 254, 277
SinI	GGWCC	2 cut(s)	51, 71
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	1 cut(s)	220
SspI	AATATT	1 cut(s)	78
StyD4I	CCNGG	1 cut(s)	21
TaaI	ACNGT	2 cut(s)	85, 185
TasI	AATT	1 cut(s)	220
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	2 cut(s)	192, 289
Tru9I	TTAA	2 cut(s)	192, 289
TscAI	CASTG	1 cut(s)	190
TspDTI	ATGAA	1 cut(s)	249
TspRI	CASTG	1 cut(s)	190
VpaK11BI	GGWCC	2 cut(s)	51, 71
XapI	RAATTY	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.